CX671741

Overview
NameCX671741
Unique NameCX671741
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length843
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX671741_ssr96 microsatellite CX671741_ssr96:96..107. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5821 contig Csv1_Contig5821:85..927. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671741 vs. ExPASy Swiss-Prot
Match: MPPA_BLAEM (Mitochondrial-processing peptidase subunit alpha OS=Blastocladiella emersonii PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.064e-16
Identity = 54/181 (29.83%), Postives = 84/181 (46.41%), Query Frame = 3
Query:  291 AAPETKITTLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTH 833
            AA  T +T LP+G+RVAT  +  +  A VGV++DAG  +ET    G +HF+  + FK T   T   + + +  +GG+L    +RE   Y   VL  D+   + +LAD        +  I   R  I              I + +HA AF    LG +I    Q  + +T + ++ Y  T+
Sbjct:   11 AARSTCMTRLPSGIRVATAPS-NSHFAAVGVYVDAGPIYETSIDRGVSHFVSSLAFKSTHGATESQVLKTMAGLGGNLFCTATRESILYQGSVLHHDLPRTVQLLADTTLRPALTEEEIAERRATIAFEAEDLHSRPDAFIGEMMHAVAFGGRGLGNSIFCEPQRARNMTSDTIREYFATY 190          
BLAST of CX671741 vs. ExPASy Swiss-Prot
Match: MPPA1_DICDI (Mitochondrial-processing peptidase subunit alpha-1 OS=Dictyostelium discoideum GN=mppA1 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.424e-15
Identity = 48/180 (26.67%), Postives = 96/180 (53.33%), Query Frame = 3
Query:  300 ETKITTLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILR-XXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHY 836
            + +I+TLPNG+RV ++       A +G++I+AG+++E+ +  G  + LE M FK T+  +  ++ +E+E +  +  A +SRE      +VL KD+   L IL+D +++ T+ +  +  + +V +R            ++ + L   AF    LG  ++   +  + IT+E L + +  +Y
Sbjct:  143 KAEISTLPNGIRVVSKQTHEGVCA-IGLYINAGTKYESPQDRGVFNLLEKMTFKETKNNSTSEIIKELEEISMNAMASSSREMINVSLEVLRKDLEFVLSILSDQIKSPTYSEEELREQIEVCIRNYEMITNSSSDQLMTEILMGVAFGDAGLGNLVIATPEQYQNITREKLFDALRKYY 321          
BLAST of CX671741 vs. ExPASy Swiss-Prot
Match: Y4WA_RHISN (Uncharacterized zinc protease y4wA OS=Rhizobium sp. (strain NGR234) GN=NGR_a01040 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.962e-15
Identity = 47/174 (27.01%), Postives = 81/174 (46.55%), Query Frame = 3
Query:  318 LPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVIL-RXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHY 836
            L NG+ V    +  A   T  +W   G+  E    +G AHFLEH++FKGT+K  + +   +I  +GG  NA+T  + T Y+  V  + +   ++  AD +++     A I  ERDVIL             ++ + + AT +Q  P     +G    ++ + +E    +   +Y
Sbjct:   92 LGNGMEVVVIPDHRAPIVTQMIWYKVGNADEPPGKSGIAHFLEHLMFKGTKKHPSGEFSAKIAEIGGEENAFTGSDYTAYHQTVTPESLRTMMEFEADRMRHLVLTDAVIVPERDVILEERRWRVENDPEQLLEEEMQATLYQNHPYRIPTIGWMHEMEQLNREDALKFYDRYY 265          
BLAST of CX671741 vs. ExPASy Swiss-Prot
Match: QCR1_YEAST (Cytochrome b-c1 complex subunit 1, mitochondrial OS=Saccharomyces cerevisiae GN=COR1 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.218e-12
Identity = 52/191 (27.23%), Postives = 92/191 (48.17%), Query Frame = 3
Query:  288 LAAPETKITTLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDIL--------ADILQNSTFDQARITRERDVILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHY 836
            +A P+ ++T L NG+ VATE N +A TA+VGV   +G+  E    NG ++  ++ IF   E       E      G  L++  SR+  +Y    L    + +LD L        A++L +S F+  +    + V+ +            + +HLH+TAFQ TPL     G  ++++ +    L+++ + H+
Sbjct:   22 VATPKAEVTQLSNGIVVATEHNPSAHTASVGVVFGSGAANENPYNNGVSNLWKN-IFLSKENSAVAAKE------GLALSSNISRDFQSYIVSSLPGSTDKSLDFLNQSFIQQKANLLSSSNFEATK----KSVLKQVQDFEENDHPNRVLEHLHSTAFQNTPLSLPTRGTLESLENLVVADLESFANNHF 201          
BLAST of CX671741 vs. ExPASy Swiss-Prot
Match: MPPA2_DICDI (Mitochondrial-processing peptidase subunit alpha-2 OS=Dictyostelium discoideum GN=mppA2 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.713e-12
Identity = 48/176 (27.27%), Postives = 84/176 (47.73%), Query Frame = 3
Query:  312 TTLPNGLRVAT-ESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHY 836
            TTL NGL+V +          ++G++I  GSR ET ET G    L+ + F+    +   +++ +IE  G    A  SR+      + L       L+ LA+I +  T     +    ++I++            IF+ +H TAF+   LGR ++ P  N+  ITK+ + N++++ Y
Sbjct:   25 TTLSNGLKVVSLVGGYTGPAVSLGLYIKTGSRNETQETAGLNQVLKGLAFESNTNKLGIEVQRDIEVSGSTAFAQASRDNLLIALQTLPNRSLQMLNNLANITK-PTLPYHEVRDVTEIIVKESEAYNHDSYSSIFESVHQTAFRGKTLGRPLVAPICNLGNITKDAVTNWVNSTY 199          
BLAST of CX671741 vs. ExPASy Swiss-Prot
Match: QCR2_BOVIN (Cytochrome b-c1 complex subunit 2, mitochondrial OS=Bos taurus GN=UQCRC2 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 3.543e-12
Identity = 46/181 (25.41%), Postives = 86/181 (47.51%), Query Frame = 3
Query:  300 ETKITTLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTA 842
            + + T LPNGL +A+  N A   + +G++I AGSR+E     GT+H L       T+  ++  +   IE +GG L+  ++RE   Y  + L  DV+  ++ L ++     F +  +   +  +              + ++LHA A++   L  ++  P   I  +T   L +Y+  H+T+
Sbjct:   37 DLEFTRLPNGLVIASLENYAP-ASRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLSVTSTRENMAYTVECLRDDVDILMEFLLNVTTAPEFRRWEVAALQPQLRIDKAVALQNPQAHVIENLHAAAYR-NALANSLYCPDYRIGKVTPVELHDYVQNHFTS 215          
BLAST of CX671741 vs. ExPASy Swiss-Prot
Match: QCR2_MOUSE (Cytochrome b-c1 complex subunit 2, mitochondrial OS=Mus musculus GN=Uqcrc2 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.682e-11
Identity = 45/185 (24.32%), Postives = 83/185 (44.86%), Query Frame = 3
Query:  288 LAAPETKITTLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTA 842
            L   + + T LPNGL +A+  N A   + +G+++ AGSR+E     GT+H L       T+  ++  +   IE +GG L+   +RE   Y  + +  D+   ++ L ++     F +  +   R  +              I ++LH  A++   L   +  P   +  IT E L  ++  H+T+
Sbjct:   33 LQPQDLEFTKLPNGLVIASLENYAP-LSRIGLFVKAGSRYEDSNNLGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLSVTATRENMAYTVEGIRSDIEILMEFLLNVTTAPEFRRWEVAALRSQLKIDKAVAFQNSQTRIIENLHDVAYK-NALANPLYCPDYRMGKITSEELHYFVQNHFTS 215          
BLAST of CX671741 vs. ExPASy Swiss-Prot
Match: QCR2_RAT (Cytochrome b-c1 complex subunit 2, mitochondrial OS=Rattus norvegicus GN=Uqcrc2 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 8.728e-11
Identity = 47/185 (25.41%), Postives = 83/185 (44.86%), Query Frame = 3
Query:  288 LAAPETKITTLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTA 842
            L   E + T LPNGL +A+  N A   + +G++I AGSR+E     GT+H L       T+  ++  +   IE +GG L+   +RE   Y  + +  D+   ++ L ++     F +  +   R  +              I ++LH  A++   L   +  P   +  IT E L  ++  H+T+
Sbjct:   32 LQPQELEFTKLPNGLVIASLENYAP-LSRIGLFIKAGSRYENYNYLGTSHLLRLASTLTTKGASSFKITRGIEAVGGKLSVTATRENMAYTVEGIRDDIEILMEFLLNVTTAPEFRRWEVAALRSQLKIDKAVAFQNPQTRIIENLHDVAYK-NALANPLYCPDYRMGKITSEELHYFVQNHFTS 214          
BLAST of CX671741 vs. ExPASy Swiss-Prot
Match: QCR2_HUMAN (Cytochrome b-c1 complex subunit 2, mitochondrial OS=Homo sapiens GN=UQCRC2 PE=1 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 8.728e-11
Identity = 45/181 (24.86%), Postives = 83/181 (45.86%), Query Frame = 3
Query:  300 ETKITTLPNGLRVATESNLAAKTATVGVWIDAGSRFETDETNGTAHFLEHMIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTA 842
            + + T LPNGL +A+  N +   + +G++I AGSR+E     GT H L       T+  ++  +   IE +GG L+   +RE   Y  + L  DV+  ++ L ++     F +  +   +  +              + ++LHA A++   L   +  P   I  +T E L  ++  H+T+
Sbjct:   37 DLEFTKLPNGLVIASLENYSP-VSRIGLFIKAGSRYEDFSNLGTTHLLRLTSSLTTKGASSFKITRGIEAVGGKLSVTATRENMAYTVECLRGDVDILMEFLLNVTTAPEFRRWEVADLQPQLKIDKAVAFQNPQTHVIENLHAAAYR-NALANPLYCPDYRIGKVTSEELHYFVQNHFTS 215          
The following BLAST results are available for this feature:
BLAST of CX671741 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
MPPA_BLAEM1.064e-1629.83Mitochondrial-processing peptidase subunit alpha O... [more]
MPPA1_DICDI3.424e-1526.67Mitochondrial-processing peptidase subunit alpha-1... [more]
Y4WA_RHISN9.962e-1527.01Uncharacterized zinc protease y4wA OS=Rhizobium sp... [more]
QCR1_YEAST1.218e-1227.23Cytochrome b-c1 complex subunit 1, mitochondrial O... [more]
MPPA2_DICDI2.713e-1227.27Mitochondrial-processing peptidase subunit alpha-2... [more]
QCR2_BOVIN3.543e-1225.41Cytochrome b-c1 complex subunit 2, mitochondrial O... [more]
QCR2_MOUSE6.682e-1124.32Cytochrome b-c1 complex subunit 2, mitochondrial O... [more]
QCR2_RAT8.728e-1125.41Cytochrome b-c1 complex subunit 2, mitochondrial O... [more]
QCR2_HUMAN8.728e-1124.86Cytochrome b-c1 complex subunit 2, mitochondrial O... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS10_12H04_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12H04-P8-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671741 ID=CX671741; Name=CX671741; organism=Citrus sinensis; type=EST; length=843bp
ATCAGTGAGTCCAAACGATGGCGTTTAAGCATCTCCTAACCCTAGCTCGC
CGGTCTCACAGGCCTTCGTCCACGGCCCTCTTTACCGCCATCCGATCCTC
CTCCTCCGCCTCACCCCTCGCCACGTCACCATCGTCTCCGCCGCCGTCCC
CGCCTCCCCCAAATGTCATGATCTACGACCGTCTCGCCGAAGCCGTCAAA
GCCAAGCTCAAAAACCTAGAAAACCCCGACCCGAAGTTCTTAAAGTACGG
ATCCCCGCACCCAACCCTTACTTCCCACACGCACATCCTCGCCGCGCCGG
AGACCAAAATCACGACTTTGCCTAACGGACTCCGCGTCGCCACCGAGTCG
AACCTCGCCGCGAAGACGGCCACAGTTGGAGTTTGGATTGACGCCGGCTC
GAGGTTCGAGACTGATGAGACGAACGGGACGGCTCATTTCTTGGAGCATA
TGATATTCAAGGGGACGGAGAAGCGGACTGCGAGAGATTTGGAGGAGGAG
ATCGAGAATATGGGGGGGCATTTGAATGCTTACACTAGCAGGGAACAGAC
GACCTATTATGCCAAGGTGTTGGATAAGGATGTGAATAATGCTTTGGATA
TTTTGGCAGATATTTTGCAGAACTCGACGTTTGATCAAGCGAGGATCACC
AGGGAACGGGATGTTATTTTGAGAGAAATGGAGGAGGTTGAGGGGCAAAC
AGAGGAAGTCATTTTTGATCATTTGCATGCAACTGCATTCCAGTACACTC
CTTTGGGGAGAACTATTCTCGGTCCTGCTCAGAATATCAAGACAATCACA
AAAGAACATCTGCAGAACTATATTCACACTCACTATACTGCTC
back to top