CX671727

Overview
NameCX671727
Unique NameCX671727
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length804
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671727 vs. ExPASy Swiss-Prot
Match: RTNLJ_ARATH (Reticulon-like protein B10 OS=Arabidopsis thaliana GN=RTNLB10 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.290e-20
Identity = 51/188 (27.13%), Postives = 88/188 (46.81%), Query Frame = 2
Query:  224 QKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSASKVPRFVLPPEVFANIGTTVCANVNEALGLLQDIACGGKLKQXXXXXXXXXXXXXIGSWCNLLTVLYIGFVAAHTLPVLYEKHEDKVDSXXXXXXXXXXXXYKKLDSGFLSKI 787
            ++ VH  +  G  AD+++W+N++    +L   T +W LFE   Y F   V    +L ++  F W   + LFNR   ++P   +  E    +   +   +N  L + ++I  G   KQ             +G++ N LT+LY+G V +  +P LYE+++D +D             Y+K+D   L KI
Sbjct:    2 EESVHQSIRFGSVADLIMWKNRRGGFLLLGSTTLLWFLFEKCGYSFFPFVVNTQLLSVVILFLWAKSAILFNRPMPQLPNLEITEEFVFMVADAIRVWINTVLAVAREIYVGRNAKQLFRVSVVLWTVSFVGNFLNFLTILYLGVVLSLLIPFLYERYQDLIDEKLSLTHRVIQTQYRKIDERLLQKI 189          
BLAST of CX671727 vs. ExPASy Swiss-Prot
Match: RTNLN_ARATH (Reticulon-like protein B14 OS=Arabidopsis thaliana GN=RTNLB14 PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 5.253e-18
Identity = 54/193 (27.98%), Postives = 95/193 (49.22%), Query Frame = 2
Query:  221 RQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSASKVPRFVLPPEVFANIGTTVCANVNEALGLLQDIACGGKLKQXXXXXXXXXXXXXIGSWCNLLTVLYIGFVAAHTLPVLYEKHEDKVDSXXXXXXXXXXXXYKKLDSGFLSKIPKGK 799
            R++ ++H LGGG+ AD++ W+NKK S ++L   T IW LFE + Y F+T +C  L+L +     W  I    ++     P  +    +  +    +   +N  +  L DI+ G   +              +G++ + LT+LYI FV   T+P+LYE++E+++                K +S  ++KIPK +
Sbjct:   18 RRRSLYHNLGGGRFADIMFWKNKKESGTILGVFTLIWFLFEVVEYPFITFLCQILLLFIFIFLIWSYIGS--SQLIQSKPPSINDLRISESNWRFLFNKINWFIIKLYDISSGKDFRLLFLAVVSLWILSVVGNYFSSLTLLYIVFVGLETIPMLYEQYEEELTYAASKSGRDMKKLLNKFNSKVINKIPKAQ 208          
BLAST of CX671727 vs. ExPASy Swiss-Prot
Match: RTNLK_ARATH (Reticulon-like protein B11 OS=Arabidopsis thaliana GN=RTNLB11 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.528e-17
Identity = 48/160 (30.00%), Postives = 77/160 (48.12%), Query Frame = 2
Query:  233 VHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSASKVPRFVLPPEVFANIGTTVCANVNEALGLLQDIACGGKLKQXXXXXXXXXXXXXIGSWCNLLTVLYIGFVAAHTLPVLYEKHEDKVD 712
            VH  LG G  AD+LLWRN+  +  +L+ +T  W LFE   Y+ L+ V   L+L +   F W   + + NR    VP   +P E        +   +N  L +  DI       +             +G+  N LT++YIG + + + P++YEK++D +D
Sbjct:   13 VHQSLGAGSVADLLLWRNRTGAVILLISSTGFWFLFERAGYNLLSFVSNVLLLLVAIFFLWAKSATVLNRPLPPVPNMEIPEEFANKAADDLRVWINYVLSIASDITIARNPIRLLQVSLVLWAISYVGTLINSLTLVYIGVLLSLSFPIVYEKYQDHID 172          
BLAST of CX671727 vs. ExPASy Swiss-Prot
Match: RTNLL_ARATH (Reticulon-like protein B12 OS=Arabidopsis thaliana GN=RTNLB12 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.405e-17
Identity = 46/168 (27.38%), Postives = 80/168 (47.62%), Query Frame = 2
Query:  206 NRLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSASKVPRFVLPPEVFANIGTTVCANVNEALGLLQDIACGGKLKQXXXXXXXXXXXXXIGSWCNLLTVLYIGFVAAHTLPVLYEKHEDKV 709
            ++LF R + +H +LGGG  ADV+LWR K +S  ++    A W++FE   Y   T++   L+L +   F W   + + NR +  +P F +   +       +  +VN+ L +  DIA     +              IGS  +  T+ +   +   T+P  YE++ED +
Sbjct:    6 DKLFNRDRTIHEILGGGIVADVMLWRKKNVSVGIVTVTIASWMVFEAFAYTIFTLISSVLLLLLSILFLWSKSASILNRPSPPLPEFQISEAMAEEASIWLRIHVNKLLQVSHDIAMARDSELYTKVAVSLFLLSLIGSLMDFQTLCHTSVLVVMTVPAFYERYEDYI 173          
BLAST of CX671727 vs. ExPASy Swiss-Prot
Match: RTNLO_ARATH (Reticulon-like protein B15 OS=Arabidopsis thaliana GN=RTNLB15 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.896e-13
Identity = 48/161 (29.81%), Postives = 78/161 (48.45%), Query Frame = 2
Query:  233 VHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSASKVPRFVLPPEVFANIGTTVCANVNEALGLLQDIACGGKLKQXXXXXXXXXXXXXIGSWCNLLTVLYIGFVAAHTLPVLYEKHEDKVDS 715
            V  +LG G  AD+ LW++K  S   L+ AT  W L E++    + ++C  L+L ML  F W     +F       P  +  P+   +    + + +   L +L +IA G   K              IGS+ +LLT+LYI  V + T+PV+Y + ++ +DS
Sbjct:    4 VDQILGDGAVADLCLWKDKINSGITLVMATLFWFLLEFMEARLVPLLCSILLLLMLILFLWAKFGEVFFTRRPPTPEELNQPD---SPLKALFSMMEGHLLMLYEIAYGKDNKTFLKTILYVAIIYNIGSYISLLTILYICLVCSMTIPVVYMQFQELIDS 161          
The following BLAST results are available for this feature:
BLAST of CX671727 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RTNLJ_ARATH3.290e-2027.13Reticulon-like protein B10 OS=Arabidopsis thaliana... [more]
RTNLN_ARATH5.253e-1827.98Reticulon-like protein B14 OS=Arabidopsis thaliana... [more]
RTNLK_ARATH1.528e-1730.00Reticulon-like protein B11 OS=Arabidopsis thaliana... [more]
RTNLL_ARATH3.405e-1727.38Reticulon-like protein B12 OS=Arabidopsis thaliana... [more]
RTNLO_ARATH3.896e-1329.81Reticulon-like protein B15 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_12G09_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12G09-N18-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671727 ID=CX671727; Name=CX671727; organism=Citrus sinensis; type=EST; length=804bp
ATCTTCACGGACACAACTCCAATCATCTACTCAGCAGACCCCATTTTTTT
TCCTTTTTTCTTGAAAGATTGGAAGAATGCCAGAGAAAATAACAGCAGAG
AACATTTTGGACAACCTTGTGGAAACCATTTCAGATAAGGTTCAAAAGCA
GAAAGCTGTATCATTTTTTGAGGAAGAGACATCAAGCTCAGTCACTGCTC
GTTTCAATCGGCTGTTCGGACGCCAGAAACCTGTCCACCATCTTTTGGGC
GGTGGAAAATCTGCTGATGTTTTGTTATGGAGGAACAAGAAGATATCAGC
CAGTGTATTAATGGGTGCAACAGCAATTTGGGTGCTCTTTGAATGGCTTA
ACTACCATTTTCTGACCATTGTATGCTTTGCTTTGGTCCTTGGCATGCTT
GCTCAGTTTTTTTGGGTAAACATTTCGGGCTTATTTAACAGATCAGCATC
AAAAGTTCCCCGCTTTGTTCTGCCTCCAGAGGTATTTGCTAACATTGGCA
CGACAGTTTGTGCTAATGTTAATGAAGCTCTGGGGCTACTTCAGGACATT
GCATGTGGAGGAAAACTGAAACAACTTCTTGTGGCTGTAGCAAGCTTGTG
GGTTGCTGCTGTGATAGGGAGCTGGTGTAACCTTTTGACCGTTCTATATA
TTGGTTTTGTTGCTGCCCATACATTACCAGTCCTGTATGAGAAGCATGAA
GATAAAGTTGACAGCTTTCTGAACAATGTCTTCCAGCAGCTCCAGAATCA
GTACAAGAAGCTTGATTCAGGTTTCCTCAGCAAAATCCCCAAGGGCAAGT
TCAA
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