CX671708
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX671708 vs. ExPASy Swiss-Prot
Match: HDAC2_HUMAN (Histone deacetylase 2 OS=Homo sapiens GN=HDAC2 PE=1 SV=2) HSP 1 Score: 337.421 bits (864), Expect = 5.352e-92 Identity = 149/208 (71.63%), Postives = 177/208 (85.10%), Query Frame = 1 Query: 166 GVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRD 789 G K+KVCY+YD ++GNYYYGQGHPMKPHRIRMTH LL +YGL + M++ +P A ++ ++H+D+Y+ FLRSI P+ + +Q++RFNVGEDCPVFDGLF FCQ GGSV GAVKLN D+A+NWAGGLHHAKK EASGFCYVNDIVLAILELLK H+RVLY+DIDIHHGDGVEEAFYTTDRVMTVSFHK+G+YFPGTGD+RD Sbjct: 7 GGKKKVCYYYDGDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKATAEEMTKYHSDEYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAGAVKLNRQQTDMAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRD 214
BLAST of CX671708 vs. ExPASy Swiss-Prot
Match: HDAC1_STRPU (Histone deacetylase 1 OS=Strongylocentrotus purpuratus GN=HDAC1 PE=2 SV=1) HSP 1 Score: 337.421 bits (864), Expect = 5.352e-92 Identity = 150/208 (72.12%), Postives = 178/208 (85.58%), Query Frame = 1 Query: 166 GVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRD 789 G K++VCY+YD +VGNYYYGQGHPMKPHRIRMTH L+ +YGL + M++ +P A ++ ++H+DDYV FLR+I P+ + +Q++RFNVGEDCPVFDGL+ FCQ +GGSV GAVKLN DIAINWAGGLHHAKK EASGFCYVNDIVLAILELLK H+RVLY+DIDIHHGDGVEEAFYTTDRVMTVSFHK+G+YFPGTGD+RD Sbjct: 5 GTKKRVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLILNYGLYRKMEIYRPHKAVMEEMTKYHSDDYVKFLRTIRPDNMSEYTKQMQRFNVGEDCPVFDGLYEFCQLSSGGSVAGAVKLNKQQTDIAINWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRD 212
BLAST of CX671708 vs. ExPASy Swiss-Prot
Match: HDA1B_XENLA (Probable histone deacetylase 1-B OS=Xenopus laevis GN=hdac1-B PE=1 SV=1) HSP 1 Score: 334.339 bits (856), Expect = 4.531e-91 Identity = 147/210 (70.00%), Postives = 177/210 (84.29%), Query Frame = 1 Query: 160 TDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRD 789 + G K+KVCY+YD +VGNYYYGQGHPMKPHRIRMTH LL +YGL + M++ +P A ++ ++H+DDY+ FLRSI P+ + +Q++RFNVGEDCPVFDGLF FCQ GGSV AVKLN DI++NW+GGLHHAKK EASGFCYVNDIVLAILELLK H+RV+Y+DIDIHHGDGVEEAFYTTDRVM+VSFHK+G+YFPGTGD+RD Sbjct: 4 SQGTKKKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKASAEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVASAVKLNKQQTDISVNWSGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVVYIDIDIHHGDGVEEAFYTTDRVMSVSFHKYGEYFPGTGDLRD 213
BLAST of CX671708 vs. ExPASy Swiss-Prot
Match: HDA6_ARATH (Histone deacetylase 6 OS=Arabidopsis thaliana GN=HDA6 PE=1 SV=1) HSP 1 Score: 332.413 bits (851), Expect = 1.722e-90 Identity = 155/222 (69.82%), Postives = 179/222 (80.63%), Query Frame = 1 Query: 130 DTGGNSLPSGTDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQ--LRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRD 789 D G SLPSG DG KR+V YFY+P +G+YYYGQGHPMKPHRIRM H+L+ HY L + +++ +P A D+ RFH+ +YV FL S++PE+ D R L+RFNVGEDCPVFDGLF FC+ AGGS+G AVKLN DIAINW GGLHHAKK EASGFCYVNDIVL ILELLK +RVLY+DID+HHGDGVEEAFYTTDRVMTVSFHKFGD+FPGTG IRD Sbjct: 4 DESGISLPSGPDGRKRRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHSLIIHYHLHRRLEISRPSLADASDIGRFHSPEYVDFLASVSPESMGDPSAARNLRRFNVGEDCPVFDGLFDFCRASAGGSIGAAVKLNRQDADIAINWGGGLHHAKKSEASGFCYVNDIVLGILELLKMFKRVLYIDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIRD 225
BLAST of CX671708 vs. ExPASy Swiss-Prot
Match: HDAC1_DROME (Histone deacetylase Rpd3 OS=Drosophila melanogaster GN=Rpd3 PE=1 SV=2) HSP 1 Score: 328.561 bits (841), Expect = 2.486e-89 Identity = 145/206 (70.39%), Postives = 173/206 (83.98%), Query Frame = 1 Query: 172 KRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRD 789 K++VCY+YD ++GNYYYGQGHPMKPHRIRMTH LL +YGL + M++ +P A ++ +FH+D+YV FLRSI P+ + +Q++RFNVGEDCPVFDGL+ FCQ AGGSV AVKLN +I INW GGLHHAKK EASGFCYVNDIVL ILELLK H+RVLY+DID+HHGDGVEEAFYTTDRVMTVSFHK+G+YFPGTGD+RD Sbjct: 6 KKRVCYYYDSDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKATADEMTKFHSDEYVRFLRSIRPDNMSEYNKQMQRFNVGEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQASEICINWGGGLHHAKKSEASGFCYVNDIVLGILELLKYHQRVLYIDIDVHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRD 211
BLAST of CX671708 vs. ExPASy Swiss-Prot
Match: HDA11_DICDI (Type-1 histone deacetylase 1 OS=Dictyostelium discoideum GN=hdaA PE=2 SV=1) HSP 1 Score: 321.627 bits (823), Expect = 3.039e-87 Identity = 143/205 (69.76%), Postives = 172/205 (83.90%), Query Frame = 1 Query: 175 RKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRD 789 RKV YFYD EVGN+YYG HPMKPHR+RMTH L+ +YG+ + MQ+ +P A E +L FH+DDY++FL+ +TP+ D +QL +FNV EDCPVFDG+++FCQ +GGS+G AVK+N D+AINWAGGLHHAKK EASGFCY NDIVL+ILELLK HERVLY+DIDIHHGDGVEEAFYTTDRVMTVSFHK+GDYFPGTGD++D Sbjct: 4 RKVSYFYDNEVGNHYYGPNHPMKPHRMRMTHDLVLNYGIYKKMQIFRPRKASELELTNFHSDDYINFLKLVTPDNMHDYSKQLVKFNVREDCPVFDGMYNFCQISSGGSIGCAVKVNSKESDVAINWAGGLHHAKKSEASGFCYTNDIVLSILELLKHHERVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKYGDYFPGTGDVKD 208
BLAST of CX671708 vs. ExPASy Swiss-Prot
Match: HDAC2_CHICK (Histone deacetylase 2 OS=Gallus gallus GN=HDAC2 PE=2 SV=1) HSP 1 Score: 319.316 bits (817), Expect = 1.508e-86 Identity = 144/208 (69.23%), Postives = 171/208 (82.21%), Query Frame = 1 Query: 166 GVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRD 789 G K+KVCY+YD ++GNYYYGQGHPMKPHRIRMTH LL +YGL + M++ +P A ++ ++H+D+Y+ FLRSI P+ + +Q++RFNVGEDCPVFDGLF FCQ GGSV GAVKLN D+A+NWAGGLHHAKK EASGFCYVNDIVLAILELLK H+RVLY+DIDIHHGDGVEEAFYTTDRVMTVS + FPGTGD+RD Sbjct: 7 GGKKKVCYYYDGDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKATAEEMTKYHSDEYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAGAVKLNRQQTDMAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSEVSMVNNFPGTGDLRD 214
BLAST of CX671708 vs. ExPASy Swiss-Prot
Match: HDA1_CAEEL (Histone deacetylase 1 OS=Caenorhabditis elegans GN=hda-1 PE=1 SV=1) HSP 1 Score: 318.161 bits (814), Expect = 3.360e-86 Identity = 140/206 (67.96%), Postives = 171/206 (83.01%), Query Frame = 1 Query: 172 KRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRD 789 KR+V Y+YD +GNYYYGQGH MKPHRIRMTH L+ +YGL +N+++ +PFPA D+ RFH+D+Y++FL+S P+ + +Q+ +FNVGEDCP+FDGL+ FCQ +GGS+ A KLN DIAINW GGLHHAKK EASGFCY NDIVL ILELLK H+RVLYVDID+HHGDGVEEAFYTTDRVMTVSFHK+GD+FPGTGD++D Sbjct: 12 KRRVAYYYDSNIGNYYYGQGHVMKPHRIRMTHHLVLNYGLYRNLEIFRPFPASFEDMTRFHSDEYMTFLKSANPDNLKSFNKQMLKFNVGEDCPLFDGLYEFCQLSSGGSLAAATKLNKQKVDIAINWMGGLHHAKKSEASGFCYTNDIVLGILELLKYHKRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKYGDFFPGTGDLKD 217
BLAST of CX671708 vs. ExPASy Swiss-Prot
Match: HDAC3_TETNG (Histone deacetylase 3 OS=Tetraodon nigroviridis GN=hdac3 PE=3 SV=1) HSP 1 Score: 313.153 bits (801), Expect = 1.081e-84 Identity = 136/203 (67.00%), Postives = 166/203 (81.77%), Query Frame = 1 Query: 178 KVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDY-FPGTGDI 783 + YFYDP+VGN++YG GHPMKPHR+ +TH+L+ HYGL + M V KP+ A + D+CRFH++DY+ FL+ ++P Q + L FNVG+DCPVF GLF FC Y G S+ GA +LNH +CDIAINWAGGLHHAKK EASGFCYVNDIV++ILELLK H RVLY+DIDIHHGDGV+EAFY TDRVMTVSFHK+G+Y FPGTGD+ Sbjct: 4 RTSYFYDPDVGNFHYGAGHPMKPHRLSLTHSLVLHYGLYKKMMVFKPYKASQHDMCRFHSEDYIDFLQKVSPNNMQGFTKSLNTFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNHKICDIAINWAGGLHHAKKFEASGFCYVNDIVISILELLKYHPRVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYGNYFFPGTGDM 206
BLAST of CX671708 vs. ExPASy Swiss-Prot
Match: HDAC3_DANRE (Histone deacetylase 3 OS=Danio rerio GN=hdac3 PE=2 SV=1) HSP 1 Score: 311.997 bits (798), Expect = 2.408e-84 Identity = 136/203 (67.00%), Postives = 165/203 (81.28%), Query Frame = 1 Query: 178 KVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDY-FPGTGDI 783 + YFYDP+VGN++YG GHPMKPHR+ +TH+L+ HYGL + M V KP+ A + D+CRFH++DY+ FL+ ++P Q + L FNVG DCPVF GLF FC Y G S+ GA +LNH +CDIAINWAGGLHHAKK EASGFCYVNDIV++ILELLK H RVLY+DIDIHHGDGV+EAFY TDRVMTVSFHK+G+Y FPGTGD+ Sbjct: 4 RTAYFYDPDVGNFHYGAGHPMKPHRLSLTHSLVLHYGLYKKMMVFKPYKASQHDMCRFHSEDYIDFLQKVSPNNMQGFTKSLNTFNVGGDCPVFPGLFEFCSRYTGASLQGATQLNHKICDIAINWAGGLHHAKKFEASGFCYVNDIVISILELLKYHPRVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYGNYFFPGTGDM 206 The following BLAST results are available for this feature:
BLAST of CX671708 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 65
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Sequences
The
following sequences are available for this feature:
EST sequence >CX671708 ID=CX671708; Name=CX671708; organism=Citrus sinensis; type=EST; length=790bpback to top |