CX671708

Overview
NameCX671708
Unique NameCX671708
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length790
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671708 vs. ExPASy Swiss-Prot
Match: HDAC2_HUMAN (Histone deacetylase 2 OS=Homo sapiens GN=HDAC2 PE=1 SV=2)

HSP 1 Score: 337.421 bits (864), Expect = 5.352e-92
Identity = 149/208 (71.63%), Postives = 177/208 (85.10%), Query Frame = 1
Query:  166 GVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRD 789
            G K+KVCY+YD ++GNYYYGQGHPMKPHRIRMTH LL +YGL + M++ +P  A   ++ ++H+D+Y+ FLRSI P+   +  +Q++RFNVGEDCPVFDGLF FCQ   GGSV GAVKLN    D+A+NWAGGLHHAKK EASGFCYVNDIVLAILELLK H+RVLY+DIDIHHGDGVEEAFYTTDRVMTVSFHK+G+YFPGTGD+RD
Sbjct:    7 GGKKKVCYYYDGDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKATAEEMTKYHSDEYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAGAVKLNRQQTDMAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRD 214          
BLAST of CX671708 vs. ExPASy Swiss-Prot
Match: HDAC1_STRPU (Histone deacetylase 1 OS=Strongylocentrotus purpuratus GN=HDAC1 PE=2 SV=1)

HSP 1 Score: 337.421 bits (864), Expect = 5.352e-92
Identity = 150/208 (72.12%), Postives = 178/208 (85.58%), Query Frame = 1
Query:  166 GVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRD 789
            G K++VCY+YD +VGNYYYGQGHPMKPHRIRMTH L+ +YGL + M++ +P  A   ++ ++H+DDYV FLR+I P+   +  +Q++RFNVGEDCPVFDGL+ FCQ  +GGSV GAVKLN    DIAINWAGGLHHAKK EASGFCYVNDIVLAILELLK H+RVLY+DIDIHHGDGVEEAFYTTDRVMTVSFHK+G+YFPGTGD+RD
Sbjct:    5 GTKKRVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLILNYGLYRKMEIYRPHKAVMEEMTKYHSDDYVKFLRTIRPDNMSEYTKQMQRFNVGEDCPVFDGLYEFCQLSSGGSVAGAVKLNKQQTDIAINWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRD 212          
BLAST of CX671708 vs. ExPASy Swiss-Prot
Match: HDA1B_XENLA (Probable histone deacetylase 1-B OS=Xenopus laevis GN=hdac1-B PE=1 SV=1)

HSP 1 Score: 334.339 bits (856), Expect = 4.531e-91
Identity = 147/210 (70.00%), Postives = 177/210 (84.29%), Query Frame = 1
Query:  160 TDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRD 789
            + G K+KVCY+YD +VGNYYYGQGHPMKPHRIRMTH LL +YGL + M++ +P  A   ++ ++H+DDY+ FLRSI P+   +  +Q++RFNVGEDCPVFDGLF FCQ   GGSV  AVKLN    DI++NW+GGLHHAKK EASGFCYVNDIVLAILELLK H+RV+Y+DIDIHHGDGVEEAFYTTDRVM+VSFHK+G+YFPGTGD+RD
Sbjct:    4 SQGTKKKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKASAEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVASAVKLNKQQTDISVNWSGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVVYIDIDIHHGDGVEEAFYTTDRVMSVSFHKYGEYFPGTGDLRD 213          
BLAST of CX671708 vs. ExPASy Swiss-Prot
Match: HDA6_ARATH (Histone deacetylase 6 OS=Arabidopsis thaliana GN=HDA6 PE=1 SV=1)

HSP 1 Score: 332.413 bits (851), Expect = 1.722e-90
Identity = 155/222 (69.82%), Postives = 179/222 (80.63%), Query Frame = 1
Query:  130 DTGGNSLPSGTDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQ--LRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRD 789
            D  G SLPSG DG KR+V YFY+P +G+YYYGQGHPMKPHRIRM H+L+ HY L + +++ +P  A   D+ RFH+ +YV FL S++PE+  D    R L+RFNVGEDCPVFDGLF FC+  AGGS+G AVKLN    DIAINW GGLHHAKK EASGFCYVNDIVL ILELLK  +RVLY+DID+HHGDGVEEAFYTTDRVMTVSFHKFGD+FPGTG IRD
Sbjct:    4 DESGISLPSGPDGRKRRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHSLIIHYHLHRRLEISRPSLADASDIGRFHSPEYVDFLASVSPESMGDPSAARNLRRFNVGEDCPVFDGLFDFCRASAGGSIGAAVKLNRQDADIAINWGGGLHHAKKSEASGFCYVNDIVLGILELLKMFKRVLYIDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIRD 225          
BLAST of CX671708 vs. ExPASy Swiss-Prot
Match: HDAC1_DROME (Histone deacetylase Rpd3 OS=Drosophila melanogaster GN=Rpd3 PE=1 SV=2)

HSP 1 Score: 328.561 bits (841), Expect = 2.486e-89
Identity = 145/206 (70.39%), Postives = 173/206 (83.98%), Query Frame = 1
Query:  172 KRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRD 789
            K++VCY+YD ++GNYYYGQGHPMKPHRIRMTH LL +YGL + M++ +P  A   ++ +FH+D+YV FLRSI P+   +  +Q++RFNVGEDCPVFDGL+ FCQ  AGGSV  AVKLN    +I INW GGLHHAKK EASGFCYVNDIVL ILELLK H+RVLY+DID+HHGDGVEEAFYTTDRVMTVSFHK+G+YFPGTGD+RD
Sbjct:    6 KKRVCYYYDSDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKATADEMTKFHSDEYVRFLRSIRPDNMSEYNKQMQRFNVGEDCPVFDGLYEFCQLSAGGSVAAAVKLNKQASEICINWGGGLHHAKKSEASGFCYVNDIVLGILELLKYHQRVLYIDIDVHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRD 211          
BLAST of CX671708 vs. ExPASy Swiss-Prot
Match: HDA11_DICDI (Type-1 histone deacetylase 1 OS=Dictyostelium discoideum GN=hdaA PE=2 SV=1)

HSP 1 Score: 321.627 bits (823), Expect = 3.039e-87
Identity = 143/205 (69.76%), Postives = 172/205 (83.90%), Query Frame = 1
Query:  175 RKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRD 789
            RKV YFYD EVGN+YYG  HPMKPHR+RMTH L+ +YG+ + MQ+ +P  A E +L  FH+DDY++FL+ +TP+   D  +QL +FNV EDCPVFDG+++FCQ  +GGS+G AVK+N    D+AINWAGGLHHAKK EASGFCY NDIVL+ILELLK HERVLY+DIDIHHGDGVEEAFYTTDRVMTVSFHK+GDYFPGTGD++D
Sbjct:    4 RKVSYFYDNEVGNHYYGPNHPMKPHRMRMTHDLVLNYGIYKKMQIFRPRKASELELTNFHSDDYINFLKLVTPDNMHDYSKQLVKFNVREDCPVFDGMYNFCQISSGGSIGCAVKVNSKESDVAINWAGGLHHAKKSEASGFCYTNDIVLSILELLKHHERVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKYGDYFPGTGDVKD 208          
BLAST of CX671708 vs. ExPASy Swiss-Prot
Match: HDAC2_CHICK (Histone deacetylase 2 OS=Gallus gallus GN=HDAC2 PE=2 SV=1)

HSP 1 Score: 319.316 bits (817), Expect = 1.508e-86
Identity = 144/208 (69.23%), Postives = 171/208 (82.21%), Query Frame = 1
Query:  166 GVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRD 789
            G K+KVCY+YD ++GNYYYGQGHPMKPHRIRMTH LL +YGL + M++ +P  A   ++ ++H+D+Y+ FLRSI P+   +  +Q++RFNVGEDCPVFDGLF FCQ   GGSV GAVKLN    D+A+NWAGGLHHAKK EASGFCYVNDIVLAILELLK H+RVLY+DIDIHHGDGVEEAFYTTDRVMTVS     + FPGTGD+RD
Sbjct:    7 GGKKKVCYYYDGDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKATAEEMTKYHSDEYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAGAVKLNRQQTDMAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSEVSMVNNFPGTGDLRD 214          
BLAST of CX671708 vs. ExPASy Swiss-Prot
Match: HDA1_CAEEL (Histone deacetylase 1 OS=Caenorhabditis elegans GN=hda-1 PE=1 SV=1)

HSP 1 Score: 318.161 bits (814), Expect = 3.360e-86
Identity = 140/206 (67.96%), Postives = 171/206 (83.01%), Query Frame = 1
Query:  172 KRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRD 789
            KR+V Y+YD  +GNYYYGQGH MKPHRIRMTH L+ +YGL +N+++ +PFPA   D+ RFH+D+Y++FL+S  P+  +   +Q+ +FNVGEDCP+FDGL+ FCQ  +GGS+  A KLN    DIAINW GGLHHAKK EASGFCY NDIVL ILELLK H+RVLYVDID+HHGDGVEEAFYTTDRVMTVSFHK+GD+FPGTGD++D
Sbjct:   12 KRRVAYYYDSNIGNYYYGQGHVMKPHRIRMTHHLVLNYGLYRNLEIFRPFPASFEDMTRFHSDEYMTFLKSANPDNLKSFNKQMLKFNVGEDCPLFDGLYEFCQLSSGGSLAAATKLNKQKVDIAINWMGGLHHAKKSEASGFCYTNDIVLGILELLKYHKRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKYGDFFPGTGDLKD 217          
BLAST of CX671708 vs. ExPASy Swiss-Prot
Match: HDAC3_TETNG (Histone deacetylase 3 OS=Tetraodon nigroviridis GN=hdac3 PE=3 SV=1)

HSP 1 Score: 313.153 bits (801), Expect = 1.081e-84
Identity = 136/203 (67.00%), Postives = 166/203 (81.77%), Query Frame = 1
Query:  178 KVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDY-FPGTGDI 783
            +  YFYDP+VGN++YG GHPMKPHR+ +TH+L+ HYGL + M V KP+ A + D+CRFH++DY+ FL+ ++P   Q   + L  FNVG+DCPVF GLF FC  Y G S+ GA +LNH +CDIAINWAGGLHHAKK EASGFCYVNDIV++ILELLK H RVLY+DIDIHHGDGV+EAFY TDRVMTVSFHK+G+Y FPGTGD+
Sbjct:    4 RTSYFYDPDVGNFHYGAGHPMKPHRLSLTHSLVLHYGLYKKMMVFKPYKASQHDMCRFHSEDYIDFLQKVSPNNMQGFTKSLNTFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNHKICDIAINWAGGLHHAKKFEASGFCYVNDIVISILELLKYHPRVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYGNYFFPGTGDM 206          
BLAST of CX671708 vs. ExPASy Swiss-Prot
Match: HDAC3_DANRE (Histone deacetylase 3 OS=Danio rerio GN=hdac3 PE=2 SV=1)

HSP 1 Score: 311.997 bits (798), Expect = 2.408e-84
Identity = 136/203 (67.00%), Postives = 165/203 (81.28%), Query Frame = 1
Query:  178 KVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDY-FPGTGDI 783
            +  YFYDP+VGN++YG GHPMKPHR+ +TH+L+ HYGL + M V KP+ A + D+CRFH++DY+ FL+ ++P   Q   + L  FNVG DCPVF GLF FC  Y G S+ GA +LNH +CDIAINWAGGLHHAKK EASGFCYVNDIV++ILELLK H RVLY+DIDIHHGDGV+EAFY TDRVMTVSFHK+G+Y FPGTGD+
Sbjct:    4 RTAYFYDPDVGNFHYGAGHPMKPHRLSLTHSLVLHYGLYKKMMVFKPYKASQHDMCRFHSEDYIDFLQKVSPNNMQGFTKSLNTFNVGGDCPVFPGLFEFCSRYTGASLQGATQLNHKICDIAINWAGGLHHAKKFEASGFCYVNDIVISILELLKYHPRVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYGNYFFPGTGDM 206          
The following BLAST results are available for this feature:
BLAST of CX671708 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
HDAC2_HUMAN5.352e-9271.63Histone deacetylase 2 OS=Homo sapiens GN=HDAC2 PE=... [more]
HDAC1_STRPU5.352e-9272.12Histone deacetylase 1 OS=Strongylocentrotus purpur... [more]
HDA1B_XENLA4.531e-9170.00Probable histone deacetylase 1-B OS=Xenopus laevis... [more]
HDA6_ARATH1.722e-9069.82Histone deacetylase 6 OS=Arabidopsis thaliana GN=H... [more]
HDAC1_DROME2.486e-8970.39Histone deacetylase Rpd3 OS=Drosophila melanogaste... [more]
HDA11_DICDI3.039e-8769.76Type-1 histone deacetylase 1 OS=Dictyostelium disc... [more]
HDAC2_CHICK1.508e-8669.23Histone deacetylase 2 OS=Gallus gallus GN=HDAC2 PE... [more]
HDA1_CAEEL3.360e-8667.96Histone deacetylase 1 OS=Caenorhabditis elegans GN... [more]
HDAC3_TETNG1.081e-8467.00Histone deacetylase 3 OS=Tetraodon nigroviridis GN... [more]
HDAC3_DANRE2.408e-8467.00Histone deacetylase 3 OS=Danio rerio GN=hdac3 PE=2... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_12F10_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12F10-L20-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671708 ID=CX671708; Name=CX671708; organism=Citrus sinensis; type=EST; length=790bp
CTATTCTACACGCTGCATTACGCAAGTTCAGCCCCGTCTTTTTATTCTCT
TGAGGTCTCGTCCCGTTGCATTCTTAGTTAGTGTTGGCTCTCCCAGTAAG
TGCCGGCCCCAAGAAATATTATTCATATGGACACTGGAGGCAATTCTTTA
CCATCTGGTACTGATGGCGTTAAGAGAAAGGTGTGTTATTTCTACGACCC
AGAGGTGGGCAATTACTACTATGGACAGGGTCACCCAATGAAACCCCATC
GCATTCGTATGACCCATGCCCTTCTCGCCCACTACGGCTTGCTTCAGAAC
ATGCAGGTCCTCAAACCTTTTCCTGCTAGGGAAAGGGATCTTTGCCGCTT
CCATGCCGATGATTATGTCTCCTTCCTCAGGAGTATCACCCCTGAGACTC
AGCAGGATCAGCTTAGGCAGCTCAAGCGCTTTAATGTTGGTGAAGATTGC
CCTGTCTTTGACGGTCTTTTCTCCTTCTGTCAAACTTATGCTGGGGGCTC
TGTTGGTGGTGCTGTCAAGTTGAATCACGGCCTCTGTGATATTGCTATCA
ACTGGGCCGGTGGCCTTCATCATGCTAAGAAATGTGAAGCTTCCGGATTC
TGTTATGTCAATGACATTGTCTTGGCCATTTTGGAGCTACTTAAGCAGCA
TGAGCGTGTATTATATGTAGATATTGATATCCATCATGGAGATGGCGTGG
AGGAAGCATTTTATACAACTGATAGGGTAATGACTGTTTCATTCCATAAG
TTCGGAGATTATTTTCCTGGTACAGGGGATATACGTGATA
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