CX671708

Overview
NameCX671708
Unique NameCX671708
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length790
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671708 vs. ExPASy Swiss-Prot
Match: HDAC3_XENTR (Histone deacetylase 3 OS=Xenopus tropicalis GN=hdac3 PE=2 SV=1)

HSP 1 Score: 310.457 bits (794), Expect = 7.006e-84
Identity = 137/204 (67.16%), Postives = 166/204 (81.37%), Query Frame = 1
Query:  175 RKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDY-FPGTGDI 783
            + V YFYDP+VGN++YG GHPMKPHR+ +TH+L+ HYGL + M V KP+ A + D+CRFH++DY+ FL+ ++P   Q   + L  FNVG+DCPVF GLF FC  Y G S+ GA +LN+ +CDIAINWAGGLHHAKK EASGFCYVNDIV+ ILELLK H RVLYVDIDIHHGDGV+EAFY TDRVMTVSFHK+G+Y FPGTGD+
Sbjct:    3 KTVAYFYDPDVGNFHYGTGHPMKPHRLSLTHSLVLHYGLYKKMIVFKPYQASQHDMCRFHSEDYIDFLQRVSPNNMQGFTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNNKICDIAINWAGGLHHAKKFEASGFCYVNDIVIGILELLKYHPRVLYVDIDIHHGDGVQEAFYLTDRVMTVSFHKYGNYFFPGTGDM 206          
BLAST of CX671708 vs. ExPASy Swiss-Prot
Match: HDAC3_CHICK (Histone deacetylase 3 OS=Gallus gallus GN=HDAC3 PE=2 SV=1)

HSP 1 Score: 310.071 bits (793), Expect = 9.150e-84
Identity = 136/204 (66.67%), Postives = 166/204 (81.37%), Query Frame = 1
Query:  175 RKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDY-FPGTGDI 783
            + V YFYDP+VGN++YG GHPMKPHR+ +TH+L+ HYGL + M V KP+ A + D+CRFH++DY+ FL+ ++P   Q   + L  FNVG+DCPVF GLF FC  Y G S+ GA +LN+ +CDIAINWAGGLHHAKK EASGFCYVNDIV+ ILELLK H RVLY+DIDIHHGDGV+EAFY TDRVMTVSFHK+G+Y FPGTGD+
Sbjct:    3 KTVAYFYDPDVGNFHYGAGHPMKPHRLALTHSLVLHYGLYKKMIVFKPYQASQHDMCRFHSEDYIDFLQRVSPNNMQGFTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNNKICDIAINWAGGLHHAKKFEASGFCYVNDIVIGILELLKYHPRVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYGNYFFPGTGDM 206          
BLAST of CX671708 vs. ExPASy Swiss-Prot
Match: HDAC3_RAT (Histone deacetylase 3 OS=Rattus norvegicus GN=Hdac3 PE=1 SV=1)

HSP 1 Score: 309.686 bits (792), Expect = 1.195e-83
Identity = 136/204 (66.67%), Postives = 166/204 (81.37%), Query Frame = 1
Query:  175 RKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDY-FPGTGDI 783
            + V YFYDP+VGN++YG GHPMKPHR+ +TH+L+ HYGL + M V KP+ A + D+CRFH++DY+ FL+ ++P   Q   + L  FNVG+DCPVF GLF FC  Y G S+ GA +LN+ +CDIAINWAGGLHHAKK EASGFCYVNDIV+ ILELLK H RVLY+DIDIHHGDGV+EAFY TDRVMTVSFHK+G+Y FPGTGD+
Sbjct:    3 KTVAYFYDPDVGNFHYGAGHPMKPHRLALTHSLVLHYGLYKKMIVFKPYQASQHDMCRFHSEDYIDFLQRVSPTNMQGFTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNNKICDIAINWAGGLHHAKKFEASGFCYVNDIVIGILELLKYHPRVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYGNYFFPGTGDM 206          
BLAST of CX671708 vs. ExPASy Swiss-Prot
Match: HDAC3_PONAB (Histone deacetylase 3 OS=Pongo abelii GN=HDAC3 PE=2 SV=1)

HSP 1 Score: 309.686 bits (792), Expect = 1.195e-83
Identity = 136/204 (66.67%), Postives = 166/204 (81.37%), Query Frame = 1
Query:  175 RKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDY-FPGTGDI 783
            + V YFYDP+VGN++YG GHPMKPHR+ +TH+L+ HYGL + M V KP+ A + D+CRFH++DY+ FL+ ++P   Q   + L  FNVG+DCPVF GLF FC  Y G S+ GA +LN+ +CDIAINWAGGLHHAKK EASGFCYVNDIV+ ILELLK H RVLY+DIDIHHGDGV+EAFY TDRVMTVSFHK+G+Y FPGTGD+
Sbjct:    3 KTVAYFYDPDVGNFHYGAGHPMKPHRLALTHSLVLHYGLYKKMIVFKPYQASQHDMCRFHSEDYIDFLQRVSPTNMQGFTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNNKICDIAINWAGGLHHAKKFEASGFCYVNDIVIGILELLKYHPRVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYGNYFFPGTGDM 206          
BLAST of CX671708 vs. ExPASy Swiss-Prot
Match: HDAC3_MOUSE (Histone deacetylase 3 OS=Mus musculus GN=Hdac3 PE=1 SV=1)

HSP 1 Score: 309.686 bits (792), Expect = 1.195e-83
Identity = 136/204 (66.67%), Postives = 166/204 (81.37%), Query Frame = 1
Query:  175 RKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDY-FPGTGDI 783
            + V YFYDP+VGN++YG GHPMKPHR+ +TH+L+ HYGL + M V KP+ A + D+CRFH++DY+ FL+ ++P   Q   + L  FNVG+DCPVF GLF FC  Y G S+ GA +LN+ +CDIAINWAGGLHHAKK EASGFCYVNDIV+ ILELLK H RVLY+DIDIHHGDGV+EAFY TDRVMTVSFHK+G+Y FPGTGD+
Sbjct:    3 KTVAYFYDPDVGNFHYGAGHPMKPHRLALTHSLVLHYGLYKKMIVFKPYQASQHDMCRFHSEDYIDFLQRVSPTNMQGFTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNNKICDIAINWAGGLHHAKKFEASGFCYVNDIVIGILELLKYHPRVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYGNYFFPGTGDM 206          
BLAST of CX671708 vs. ExPASy Swiss-Prot
Match: HDAC3_HUMAN (Histone deacetylase 3 OS=Homo sapiens GN=HDAC3 PE=1 SV=2)

HSP 1 Score: 309.686 bits (792), Expect = 1.195e-83
Identity = 136/204 (66.67%), Postives = 166/204 (81.37%), Query Frame = 1
Query:  175 RKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDY-FPGTGDI 783
            + V YFYDP+VGN++YG GHPMKPHR+ +TH+L+ HYGL + M V KP+ A + D+CRFH++DY+ FL+ ++P   Q   + L  FNVG+DCPVF GLF FC  Y G S+ GA +LN+ +CDIAINWAGGLHHAKK EASGFCYVNDIV+ ILELLK H RVLY+DIDIHHGDGV+EAFY TDRVMTVSFHK+G+Y FPGTGD+
Sbjct:    3 KTVAYFYDPDVGNFHYGAGHPMKPHRLALTHSLVLHYGLYKKMIVFKPYQASQHDMCRFHSEDYIDFLQRVSPTNMQGFTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNNKICDIAINWAGGLHHAKKFEASGFCYVNDIVIGILELLKYHPRVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYGNYFFPGTGDM 206          
BLAST of CX671708 vs. ExPASy Swiss-Prot
Match: HDAC3_XENLA (Histone deacetylase 3 OS=Xenopus laevis GN=hdac3 PE=2 SV=2)

HSP 1 Score: 306.99 bits (785), Expect = 7.746e-83
Identity = 136/204 (66.67%), Postives = 164/204 (80.39%), Query Frame = 1
Query:  175 RKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDY-FPGTGDI 783
            + V YFYDP+VGN++YG GHPMKPHR+ +TH+L+ HYGL + M V KP+ A + D+CRFH++DY+ FL+ ++P   Q   + L  FNVG+DCPVF GLF FC  Y G S+ GA  LN+  CDIAINWAGGLHHAKK EASGFCYVNDIV+ ILELLK H RVLY+DIDIHHGDGV+EAFY TDRVMTVSFHK+G+Y FPGTGD+
Sbjct:    3 KTVAYFYDPDVGNFHYGTGHPMKPHRLSLTHSLVLHYGLYKKMIVFKPYQASQHDMCRFHSEDYIDFLQRVSPNNMQGFTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATLLNNKNCDIAINWAGGLHHAKKFEASGFCYVNDIVIGILELLKYHPRVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYGNYFFPGTGDM 206          
BLAST of CX671708 vs. ExPASy Swiss-Prot
Match: RPD3_YEAST (Histone deacetylase RPD3 OS=Saccharomyces cerevisiae GN=RPD3 PE=1 SV=1)

HSP 1 Score: 306.22 bits (783), Expect = 1.321e-82
Identity = 130/206 (63.11%), Postives = 169/206 (82.04%), Query Frame = 1
Query:  172 KRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRD 789
            KR+V YFYD +VGNY YG GHPMKPHRIRM H+L+ +YGL + M++ +  PA ++++C+FH D+Y+ FL  +TP+  +   R+  +FNVG+DCPVFDGL+ +C    GGS+ GA +LN G CD+A+N+AGGLHHAKK EASGFCY+NDIVL I+ELL+ H RVLY+DID+HHGDGVEEAFYTTDRVMT SFHK+G++FPGTG++RD
Sbjct:   18 KRRVAYFYDADVGNYAYGAGHPMKPHRIRMAHSLIMNYGLYKKMEIYRAKPATKQEMCQFHTDEYIDFLSRVTPDNLEMFKRESVKFNVGDDCPVFDGLYEYCSISGGGSMEGAARLNRGKCDVAVNYAGGLHHAKKSEASGFCYLNDIVLGIIELLRYHPRVLYIDIDVHHGDGVEEAFYTTDRVMTCSFHKYGEFFPGTGELRD 223          
BLAST of CX671708 vs. ExPASy Swiss-Prot
Match: CLR6_SCHPO (Histone deacetylase clr6 OS=Schizosaccharomyces pombe GN=clr6 PE=1 SV=1)

HSP 1 Score: 296.59 bits (758), Expect = 1.047e-79
Identity = 137/207 (66.18%), Postives = 162/207 (78.26%), Query Frame = 1
Query:  172 KRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQD-QLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRD 789
            K+KV YFYD +VGNY+YG  HPMKPHR+RM H L+ +Y L + + V+ P  A   D+ R H D+Y+ FL  +TP+T +  Q  QLK FNVG+DCPVFDGL+ FC   AGGS+G A +LN G  +IAINWAGGLHHAKK EASGFCYVNDI LA LELLK H+RVLY+DID+HHGDGVEE FYTTDRVMT SFHKFG+YFPGTG I+D
Sbjct:    5 KKKVSYFYDEDVGNYHYGPQHPMKPHRVRMVHNLVVNYNLYEKLNVITPVRATRNDMTRCHTDEYIEFLWRVTPDTMEKFQPHQLK-FNVGDDCPVFDGLYEFCSISAGGSIGAAQELNSGNAEIAINWAGGLHHAKKREASGFCYVNDIALAALELLKYHQRVLYIDIDVHHGDGVEEFFYTTDRVMTCSFHKFGEYFPGTGHIKD 210          
BLAST of CX671708 vs. ExPASy Swiss-Prot
Match: HDA9_ARATH (Histone deacetylase 9 OS=Arabidopsis thaliana GN=HDA9 PE=2 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 1.786e-79
Identity = 133/207 (64.25%), Postives = 164/207 (79.23%), Query Frame = 1
Query:  172 KRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGD-YFPGTGDIRD 789
            K K+ YFYD +VG+ Y+G  HPMKPHR+ MTH L+  YGL   M+V +P  A   ++ +FH+ DYV FL+ I PE Q     ++ R+N+GEDCPVF+ LF FCQ YAGG++  A +LN+ LCDIAINWAGGLHHAKKC+ASGFCY+ND+VL ILELLK H RVLY+DID+HHGDGVEEAFY TDRVMTVSFHKFGD +FPGTGD+++
Sbjct:    4 KDKISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLILAYGLHSKMEVYRPHKAYPIEMAQFHSPDYVEFLQRINPENQNLFPNEMARYNLGEDCPVFEDLFEFCQLYAGGTIDAARRLNNKLCDIAINWAGGLHHAKKCDASGFCYINDLVLGILELLKHHPRVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDKFFPGTGDVKE 210          
The following BLAST results are available for this feature:
BLAST of CX671708 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
HDAC3_XENTR7.006e-8467.16Histone deacetylase 3 OS=Xenopus tropicalis GN=hda... [more]
HDAC3_CHICK9.150e-8466.67Histone deacetylase 3 OS=Gallus gallus GN=HDAC3 PE... [more]
HDAC3_RAT1.195e-8366.67Histone deacetylase 3 OS=Rattus norvegicus GN=Hdac... [more]
HDAC3_PONAB1.195e-8366.67Histone deacetylase 3 OS=Pongo abelii GN=HDAC3 PE=... [more]
HDAC3_MOUSE1.195e-8366.67Histone deacetylase 3 OS=Mus musculus GN=Hdac3 PE=... [more]
HDAC3_HUMAN1.195e-8366.67Histone deacetylase 3 OS=Homo sapiens GN=HDAC3 PE=... [more]
HDAC3_XENLA7.746e-8366.67Histone deacetylase 3 OS=Xenopus laevis GN=hdac3 P... [more]
RPD3_YEAST1.321e-8263.11Histone deacetylase RPD3 OS=Saccharomyces cerevisi... [more]
CLR6_SCHPO1.047e-7966.18Histone deacetylase clr6 OS=Schizosaccharomyces po... [more]
HDA9_ARATH1.786e-7964.25Histone deacetylase 9 OS=Arabidopsis thaliana GN=H... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_12F10_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12F10-L20-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671708 ID=CX671708; Name=CX671708; organism=Citrus sinensis; type=EST; length=790bp
CTATTCTACACGCTGCATTACGCAAGTTCAGCCCCGTCTTTTTATTCTCT
TGAGGTCTCGTCCCGTTGCATTCTTAGTTAGTGTTGGCTCTCCCAGTAAG
TGCCGGCCCCAAGAAATATTATTCATATGGACACTGGAGGCAATTCTTTA
CCATCTGGTACTGATGGCGTTAAGAGAAAGGTGTGTTATTTCTACGACCC
AGAGGTGGGCAATTACTACTATGGACAGGGTCACCCAATGAAACCCCATC
GCATTCGTATGACCCATGCCCTTCTCGCCCACTACGGCTTGCTTCAGAAC
ATGCAGGTCCTCAAACCTTTTCCTGCTAGGGAAAGGGATCTTTGCCGCTT
CCATGCCGATGATTATGTCTCCTTCCTCAGGAGTATCACCCCTGAGACTC
AGCAGGATCAGCTTAGGCAGCTCAAGCGCTTTAATGTTGGTGAAGATTGC
CCTGTCTTTGACGGTCTTTTCTCCTTCTGTCAAACTTATGCTGGGGGCTC
TGTTGGTGGTGCTGTCAAGTTGAATCACGGCCTCTGTGATATTGCTATCA
ACTGGGCCGGTGGCCTTCATCATGCTAAGAAATGTGAAGCTTCCGGATTC
TGTTATGTCAATGACATTGTCTTGGCCATTTTGGAGCTACTTAAGCAGCA
TGAGCGTGTATTATATGTAGATATTGATATCCATCATGGAGATGGCGTGG
AGGAAGCATTTTATACAACTGATAGGGTAATGACTGTTTCATTCCATAAG
TTCGGAGATTATTTTCCTGGTACAGGGGATATACGTGATA
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