CX671708
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX671708 vs. ExPASy Swiss-Prot
Match: HDAC3_XENTR (Histone deacetylase 3 OS=Xenopus tropicalis GN=hdac3 PE=2 SV=1) HSP 1 Score: 310.457 bits (794), Expect = 7.006e-84 Identity = 137/204 (67.16%), Postives = 166/204 (81.37%), Query Frame = 1 Query: 175 RKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDY-FPGTGDI 783 + V YFYDP+VGN++YG GHPMKPHR+ +TH+L+ HYGL + M V KP+ A + D+CRFH++DY+ FL+ ++P Q + L FNVG+DCPVF GLF FC Y G S+ GA +LN+ +CDIAINWAGGLHHAKK EASGFCYVNDIV+ ILELLK H RVLYVDIDIHHGDGV+EAFY TDRVMTVSFHK+G+Y FPGTGD+ Sbjct: 3 KTVAYFYDPDVGNFHYGTGHPMKPHRLSLTHSLVLHYGLYKKMIVFKPYQASQHDMCRFHSEDYIDFLQRVSPNNMQGFTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNNKICDIAINWAGGLHHAKKFEASGFCYVNDIVIGILELLKYHPRVLYVDIDIHHGDGVQEAFYLTDRVMTVSFHKYGNYFFPGTGDM 206
BLAST of CX671708 vs. ExPASy Swiss-Prot
Match: HDAC3_CHICK (Histone deacetylase 3 OS=Gallus gallus GN=HDAC3 PE=2 SV=1) HSP 1 Score: 310.071 bits (793), Expect = 9.150e-84 Identity = 136/204 (66.67%), Postives = 166/204 (81.37%), Query Frame = 1 Query: 175 RKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDY-FPGTGDI 783 + V YFYDP+VGN++YG GHPMKPHR+ +TH+L+ HYGL + M V KP+ A + D+CRFH++DY+ FL+ ++P Q + L FNVG+DCPVF GLF FC Y G S+ GA +LN+ +CDIAINWAGGLHHAKK EASGFCYVNDIV+ ILELLK H RVLY+DIDIHHGDGV+EAFY TDRVMTVSFHK+G+Y FPGTGD+ Sbjct: 3 KTVAYFYDPDVGNFHYGAGHPMKPHRLALTHSLVLHYGLYKKMIVFKPYQASQHDMCRFHSEDYIDFLQRVSPNNMQGFTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNNKICDIAINWAGGLHHAKKFEASGFCYVNDIVIGILELLKYHPRVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYGNYFFPGTGDM 206
BLAST of CX671708 vs. ExPASy Swiss-Prot
Match: HDAC3_RAT (Histone deacetylase 3 OS=Rattus norvegicus GN=Hdac3 PE=1 SV=1) HSP 1 Score: 309.686 bits (792), Expect = 1.195e-83 Identity = 136/204 (66.67%), Postives = 166/204 (81.37%), Query Frame = 1 Query: 175 RKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDY-FPGTGDI 783 + V YFYDP+VGN++YG GHPMKPHR+ +TH+L+ HYGL + M V KP+ A + D+CRFH++DY+ FL+ ++P Q + L FNVG+DCPVF GLF FC Y G S+ GA +LN+ +CDIAINWAGGLHHAKK EASGFCYVNDIV+ ILELLK H RVLY+DIDIHHGDGV+EAFY TDRVMTVSFHK+G+Y FPGTGD+ Sbjct: 3 KTVAYFYDPDVGNFHYGAGHPMKPHRLALTHSLVLHYGLYKKMIVFKPYQASQHDMCRFHSEDYIDFLQRVSPTNMQGFTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNNKICDIAINWAGGLHHAKKFEASGFCYVNDIVIGILELLKYHPRVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYGNYFFPGTGDM 206
BLAST of CX671708 vs. ExPASy Swiss-Prot
Match: HDAC3_PONAB (Histone deacetylase 3 OS=Pongo abelii GN=HDAC3 PE=2 SV=1) HSP 1 Score: 309.686 bits (792), Expect = 1.195e-83 Identity = 136/204 (66.67%), Postives = 166/204 (81.37%), Query Frame = 1 Query: 175 RKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDY-FPGTGDI 783 + V YFYDP+VGN++YG GHPMKPHR+ +TH+L+ HYGL + M V KP+ A + D+CRFH++DY+ FL+ ++P Q + L FNVG+DCPVF GLF FC Y G S+ GA +LN+ +CDIAINWAGGLHHAKK EASGFCYVNDIV+ ILELLK H RVLY+DIDIHHGDGV+EAFY TDRVMTVSFHK+G+Y FPGTGD+ Sbjct: 3 KTVAYFYDPDVGNFHYGAGHPMKPHRLALTHSLVLHYGLYKKMIVFKPYQASQHDMCRFHSEDYIDFLQRVSPTNMQGFTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNNKICDIAINWAGGLHHAKKFEASGFCYVNDIVIGILELLKYHPRVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYGNYFFPGTGDM 206
BLAST of CX671708 vs. ExPASy Swiss-Prot
Match: HDAC3_MOUSE (Histone deacetylase 3 OS=Mus musculus GN=Hdac3 PE=1 SV=1) HSP 1 Score: 309.686 bits (792), Expect = 1.195e-83 Identity = 136/204 (66.67%), Postives = 166/204 (81.37%), Query Frame = 1 Query: 175 RKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDY-FPGTGDI 783 + V YFYDP+VGN++YG GHPMKPHR+ +TH+L+ HYGL + M V KP+ A + D+CRFH++DY+ FL+ ++P Q + L FNVG+DCPVF GLF FC Y G S+ GA +LN+ +CDIAINWAGGLHHAKK EASGFCYVNDIV+ ILELLK H RVLY+DIDIHHGDGV+EAFY TDRVMTVSFHK+G+Y FPGTGD+ Sbjct: 3 KTVAYFYDPDVGNFHYGAGHPMKPHRLALTHSLVLHYGLYKKMIVFKPYQASQHDMCRFHSEDYIDFLQRVSPTNMQGFTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNNKICDIAINWAGGLHHAKKFEASGFCYVNDIVIGILELLKYHPRVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYGNYFFPGTGDM 206
BLAST of CX671708 vs. ExPASy Swiss-Prot
Match: HDAC3_HUMAN (Histone deacetylase 3 OS=Homo sapiens GN=HDAC3 PE=1 SV=2) HSP 1 Score: 309.686 bits (792), Expect = 1.195e-83 Identity = 136/204 (66.67%), Postives = 166/204 (81.37%), Query Frame = 1 Query: 175 RKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDY-FPGTGDI 783 + V YFYDP+VGN++YG GHPMKPHR+ +TH+L+ HYGL + M V KP+ A + D+CRFH++DY+ FL+ ++P Q + L FNVG+DCPVF GLF FC Y G S+ GA +LN+ +CDIAINWAGGLHHAKK EASGFCYVNDIV+ ILELLK H RVLY+DIDIHHGDGV+EAFY TDRVMTVSFHK+G+Y FPGTGD+ Sbjct: 3 KTVAYFYDPDVGNFHYGAGHPMKPHRLALTHSLVLHYGLYKKMIVFKPYQASQHDMCRFHSEDYIDFLQRVSPTNMQGFTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNNKICDIAINWAGGLHHAKKFEASGFCYVNDIVIGILELLKYHPRVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYGNYFFPGTGDM 206
BLAST of CX671708 vs. ExPASy Swiss-Prot
Match: HDAC3_XENLA (Histone deacetylase 3 OS=Xenopus laevis GN=hdac3 PE=2 SV=2) HSP 1 Score: 306.99 bits (785), Expect = 7.746e-83 Identity = 136/204 (66.67%), Postives = 164/204 (80.39%), Query Frame = 1 Query: 175 RKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDY-FPGTGDI 783 + V YFYDP+VGN++YG GHPMKPHR+ +TH+L+ HYGL + M V KP+ A + D+CRFH++DY+ FL+ ++P Q + L FNVG+DCPVF GLF FC Y G S+ GA LN+ CDIAINWAGGLHHAKK EASGFCYVNDIV+ ILELLK H RVLY+DIDIHHGDGV+EAFY TDRVMTVSFHK+G+Y FPGTGD+ Sbjct: 3 KTVAYFYDPDVGNFHYGTGHPMKPHRLSLTHSLVLHYGLYKKMIVFKPYQASQHDMCRFHSEDYIDFLQRVSPNNMQGFTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATLLNNKNCDIAINWAGGLHHAKKFEASGFCYVNDIVIGILELLKYHPRVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYGNYFFPGTGDM 206
BLAST of CX671708 vs. ExPASy Swiss-Prot
Match: RPD3_YEAST (Histone deacetylase RPD3 OS=Saccharomyces cerevisiae GN=RPD3 PE=1 SV=1) HSP 1 Score: 306.22 bits (783), Expect = 1.321e-82 Identity = 130/206 (63.11%), Postives = 169/206 (82.04%), Query Frame = 1 Query: 172 KRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRD 789 KR+V YFYD +VGNY YG GHPMKPHRIRM H+L+ +YGL + M++ + PA ++++C+FH D+Y+ FL +TP+ + R+ +FNVG+DCPVFDGL+ +C GGS+ GA +LN G CD+A+N+AGGLHHAKK EASGFCY+NDIVL I+ELL+ H RVLY+DID+HHGDGVEEAFYTTDRVMT SFHK+G++FPGTG++RD Sbjct: 18 KRRVAYFYDADVGNYAYGAGHPMKPHRIRMAHSLIMNYGLYKKMEIYRAKPATKQEMCQFHTDEYIDFLSRVTPDNLEMFKRESVKFNVGDDCPVFDGLYEYCSISGGGSMEGAARLNRGKCDVAVNYAGGLHHAKKSEASGFCYLNDIVLGIIELLRYHPRVLYIDIDVHHGDGVEEAFYTTDRVMTCSFHKYGEFFPGTGELRD 223
BLAST of CX671708 vs. ExPASy Swiss-Prot
Match: CLR6_SCHPO (Histone deacetylase clr6 OS=Schizosaccharomyces pombe GN=clr6 PE=1 SV=1) HSP 1 Score: 296.59 bits (758), Expect = 1.047e-79 Identity = 137/207 (66.18%), Postives = 162/207 (78.26%), Query Frame = 1 Query: 172 KRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQD-QLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRD 789 K+KV YFYD +VGNY+YG HPMKPHR+RM H L+ +Y L + + V+ P A D+ R H D+Y+ FL +TP+T + Q QLK FNVG+DCPVFDGL+ FC AGGS+G A +LN G +IAINWAGGLHHAKK EASGFCYVNDI LA LELLK H+RVLY+DID+HHGDGVEE FYTTDRVMT SFHKFG+YFPGTG I+D Sbjct: 5 KKKVSYFYDEDVGNYHYGPQHPMKPHRVRMVHNLVVNYNLYEKLNVITPVRATRNDMTRCHTDEYIEFLWRVTPDTMEKFQPHQLK-FNVGDDCPVFDGLYEFCSISAGGSIGAAQELNSGNAEIAINWAGGLHHAKKREASGFCYVNDIALAALELLKYHQRVLYIDIDVHHGDGVEEFFYTTDRVMTCSFHKFGEYFPGTGHIKD 210
BLAST of CX671708 vs. ExPASy Swiss-Prot
Match: HDA9_ARATH (Histone deacetylase 9 OS=Arabidopsis thaliana GN=HDA9 PE=2 SV=1) HSP 1 Score: 295.819 bits (756), Expect = 1.786e-79 Identity = 133/207 (64.25%), Postives = 164/207 (79.23%), Query Frame = 1 Query: 172 KRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGD-YFPGTGDIRD 789 K K+ YFYD +VG+ Y+G HPMKPHR+ MTH L+ YGL M+V +P A ++ +FH+ DYV FL+ I PE Q ++ R+N+GEDCPVF+ LF FCQ YAGG++ A +LN+ LCDIAINWAGGLHHAKKC+ASGFCY+ND+VL ILELLK H RVLY+DID+HHGDGVEEAFY TDRVMTVSFHKFGD +FPGTGD+++ Sbjct: 4 KDKISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLILAYGLHSKMEVYRPHKAYPIEMAQFHSPDYVEFLQRINPENQNLFPNEMARYNLGEDCPVFEDLFEFCQLYAGGTIDAARRLNNKLCDIAINWAGGLHHAKKCDASGFCYINDLVLGILELLKHHPRVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDKFFPGTGDVKE 210 The following BLAST results are available for this feature:
BLAST of CX671708 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 65
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Sequences
The
following sequences are available for this feature:
EST sequence >CX671708 ID=CX671708; Name=CX671708; organism=Citrus sinensis; type=EST; length=790bpback to top |