CX671708

Overview
NameCX671708
Unique NameCX671708
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length790
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671708 vs. ExPASy Swiss-Prot
Match: HDA12_DICDI (Histone deacetylase B OS=Dictyostelium discoideum GN=hdaB PE=2 SV=1)

HSP 1 Score: 294.664 bits (753), Expect = 3.978e-79
Identity = 134/205 (65.37%), Postives = 168/205 (81.95%), Query Frame = 1
Query:  172 KRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKF-GDYFPGTGDI 783
            K +VCYF+D +VGNY+YG  HPMKPHR+ +T+ L+ +YGL + M + K  PA   D+ +FH++DYV FL  +TPE   ++ + +KRF++GEDCPVF GL+ +C  Y+GGS+ GA+KLNH + DIAINW+GGLHHA+K EASGFCYVNDIVLAILELLK H RVLY+DID+HHGDGV+EAFY TDRVMTVSFHKF GD+FPGTGDI
Sbjct:   12 KTRVCYFFDQDVGNYFYGPYHPMKPHRLCLTNNLVLNYGLHKKMHLYKARPADAEDMLKFHSEDYVDFLERVTPENI-NEWKDVKRFHIGEDCPVFPGLYDYCSIYSGGSIEGALKLNHRMYDIAINWSGGLHHARKDEASGFCYVNDIVLAILELLKFHARVLYIDIDVHHGDGVQEAFYLTDRVMTVSFHKFGGDFFPGTGDI 215          
BLAST of CX671708 vs. ExPASy Swiss-Prot
Match: HDA2_CAEEL (Putative histone deacetylase 2 OS=Caenorhabditis elegans GN=hda-2 PE=2 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 1.160e-70
Identity = 126/216 (58.33%), Postives = 161/216 (74.54%), Query Frame = 1
Query:  151 PSGTDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPE---TQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRD 789
            P G D  KR V Y+Y  +VG+++YGQ HPMKP R+ + + L+  Y + + M V++       D+  FH +DYV+FL+++TP+   T  D +  L++FN+GEDCP+F GL+ +C  YAGGSV GA +LNH + DI INW GGLHHAKK EASGFCYVNDIVL ILELLK H+RVLY+DIDIHHGDGV+EAF  +DRVMTVSFH+FG YFPG+G I D
Sbjct:   21 PDGADVKKRNVAYYYHKDVGHFHYGQLHPMKPQRLVVCNDLVVSYEMPKYMTVVESPKLDAADISVFHTEDYVNFLQTVTPKLGLTMPDDV--LRQFNIGEDCPIFAGLWDYCTLYAGGSVEGARRLNHKMNDIVINWPGGLHHAKKSEASGFCYVNDIVLGILELLKYHKRVLYIDIDIHHGDGVQEAFNNSDRVMTVSFHRFGQYFPGSGSIMD 234          
BLAST of CX671708 vs. ExPASy Swiss-Prot
Match: PHD1_SCHPO (Histone deacetylase phd1 OS=Schizosaccharomyces pombe GN=phd1 PE=1 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 1.917e-65
Identity = 115/204 (56.37%), Postives = 150/204 (73.53%), Query Frame = 1
Query:  172 KRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKF-GDYFPGTGD 780
            K++V Y  D +VGNY+YG  HPMKPHRI +T+ L+  YGL   M V  P  A   ++  FH +DY+ FL+ +TP+  +    + ++FN+G+DCPVFDG + F Q  AG S+  + KL  G  DIAINW+GGLHHAK+ EASGFCYVNDIVLAIL +L+   RVLY+DIDIHHGDGV++AFY +DRV+TVSFHK+ GD+FP TG+
Sbjct:   25 KKRVTYHLDEQVGNYHYGDKHPMKPHRITITNHLVMGYGLHNKMSVFSPRMATFGEMSEFHREDYLDFLKRVTPDNAEQFADKFQQFNIGDDCPVFDGTYEFSQRSAGASLDASRKLVQGQTDIAINWSGGLHHAKRGEASGFCYVNDIVLAILNMLRFFPRVLYIDIDIHHGDGVQQAFYESDRVLTVSFHKYNGDFFPATGN 228          
BLAST of CX671708 vs. ExPASy Swiss-Prot
Match: HDA7_ARATH (Histone deacetylase 7 OS=Arabidopsis thaliana GN=HDA7 PE=2 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.984e-62
Identity = 124/220 (56.36%), Postives = 151/220 (68.64%), Query Frame = 1
Query:  148 LPSGTDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQ----LRQLKRFNVGEDC--PVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRD 789
            + S  DG KR+V YFY+P +G+YYYG   P KP RIR+TH L+  Y L ++M++  P  A   D  +FH+ +Y++FL+S+TPET  D        LKRFNV  D   PVF  LF +C+ YAGGS+  A KLN    DIAINWAGG+HH KK +ASGF YVND+VLAILELLK  +RVLY++I   HGD VEEAF  TDRVMTVSFHK GD    TGDI D
Sbjct:    1 MASLADGGKRRVSYFYEPMIGDYYYGVNQPTKPQRIRVTHNLILSYNLHRHMEINHPDLADASDFEKFHSLEYINFLKSVTPETVTDPHPSVSENLKRFNVDVDWDGPVFHNLFDYCRAYAGGSISAAAKLNRQEADIAINWAGGMHHVKKDKASGFGYVNDVVLAILELLKSFKRVLYIEIGFPHGDEVEEAFKDTDRVMTVSFHKVGD----TGDISD 216          
BLAST of CX671708 vs. ExPASy Swiss-Prot
Match: HOS2_YEAST (Probable histone deacetylase HOS2 OS=Saccharomyces cerevisiae GN=HOS2 PE=1 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.422e-60
Identity = 107/206 (51.94%), Postives = 148/206 (71.84%), Query Frame = 1
Query:  178 KVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLR-QLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKF-GDYFPGTGDIRD 789
            +V Y ++ +V +Y+YG  HPMKP R+ +T  L++ YGL + M + +   A   +L +FH++DYV+FL  ++PE      R  L+ FN+G+DCP+F  L+ +   Y G S+    KL +   DIAINW+GGLHHAKK   SGFCYVNDIVL+IL LL+ H R+LY+DID+HHGDGV+EAFYTTDRV T+SFHK+ G++FPGTGD+ +
Sbjct:   27 RVSYHFNSKVSHYHYGVKHPMKPFRLMLTDHLVSSYGLHKIMDLYETRSATRDELLQFHSEDYVNFLSKVSPENANKLPRGTLENFNIGDDCPIFQNLYDYTTLYTGASLDATRKLINNQSDIAINWSGGLHHAKKNSPSGFCYVNDIVLSILNLLRYHPRILYIDIDLHHGDGVQEAFYTTDRVFTLSFHKYNGEFFPGTGDLTE 232          
BLAST of CX671708 vs. ExPASy Swiss-Prot
Match: HDAC8_DANRE (Histone deacetylase 8 OS=Danio rerio GN=hdac8 PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.474e-49
Identity = 102/207 (49.28%), Postives = 131/207 (63.29%), Query Frame = 1
Query:  175 RKVCYFYDPEVGNYYYGQGHPMK-PHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFG-DYFPGTGDIRD 789
            R V Y Y PE   Y        K P+R  M H+L+  YGLL+ M+V+KP  A   ++  FH D Y+  L  I+ +   D   Q   F +G DCPV +G+F +     G ++  A  L  G CD+AINWAGG HHAKK EASG CYVND VL IL+L ++++RVLYVD+D+HHGDGVE+AF  T +VMTVS HKF   +FPGTGD+ D
Sbjct:   15 RSVVYVYSPE---YIQTCDSLSKVPNRASMVHSLIEAYGLLKYMRVVKPHVASIEEMAVFHTDSYLQHLHKISQDGDNDD-PQSADFGLGYDCPVVEGIFDYAAAVGGATLTAAQNLLDGKCDVAINWAGGWHHAKKDEASGSCYVNDAVLGILKLREKYDRVLYVDVDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVTD 217          
BLAST of CX671708 vs. ExPASy Swiss-Prot
Match: HDAC8_XENTR (Histone deacetylase 8 OS=Xenopus tropicalis GN=hdac8 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.603e-46
Identity = 89/183 (48.63%), Postives = 121/183 (66.12%), Query Frame = 1
Query:  244 PHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFG-DYFPGTGDIRD 789
            P R  M H+L+  YGLL+ M+V+KP  A   ++  FH D Y+  L  ++ E   D    L+ + +G DCP+ +G++ +     G ++  A +L  G   IAINW GG HHAKK EASGFCY+ND VL IL+L ++ +RVLYVD+D+HHGDGVE+AF  T +VMTVS HKF   +FPGTGD+ D
Sbjct:   27 PRRASMVHSLIEAYGLLKEMRVVKPKVASMEEMAAFHTDSYLQHLHKVSEEGDNDDPETLE-YGLGYDCPITEGIYDYAAAVGGATLTAAEQLMAGKTRIAINWPGGWHHAKKDEASGFCYLNDAVLGILKLREKFDRVLYVDMDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSD 208          
BLAST of CX671708 vs. ExPASy Swiss-Prot
Match: HDAC8_HUMAN (Histone deacetylase 8 OS=Homo sapiens GN=HDAC8 PE=1 SV=2)

HSP 1 Score: 184.882 bits (468), Expect = 4.439e-46
Identity = 86/183 (46.99%), Postives = 120/183 (65.57%), Query Frame = 1
Query:  244 PHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFG-DYFPGTGDIRD 789
            P R  M H+L+  Y L + M+++KP  A   ++  FH D Y+  L+ ++ E   D    ++ + +G DCP  +G+F +     G ++  A  L  G+C +AINW+GG HHAKK EASGFCY+ND VL IL L ++ ER+LYVD+D+HHGDGVE+AF  T +VMTVS HKF   +FPGTGD+ D
Sbjct:   35 PKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAYLQHLQKVSQEGDDDHPDSIE-YGLGYDCPATEGIFDYAAAIGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGILRLRRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSD 216          
BLAST of CX671708 vs. ExPASy Swiss-Prot
Match: HDAC8_RAT (Histone deacetylase 8 OS=Rattus norvegicus GN=Hdac8 PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 5.798e-46
Identity = 86/183 (46.99%), Postives = 121/183 (66.12%), Query Frame = 1
Query:  244 PHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFG-DYFPGTGDIRD 789
            P R  M H+L+  Y L + M+++KP  A   ++  FH D Y+  L+ ++ E  +D    ++ + +G DCP  +G+F +     GG++  A  L  G C +AINW+GG HHAKK EASGFCY+ND VL IL L ++ +R+LYVD+D+HHGDGVE+AF  T +VMTVS HKF   +FPGTGD+ D
Sbjct:   35 PKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAYLQHLQKVSQEGDEDHPDSIE-YGLGYDCPATEGIFDYAAAIGGGTITAAQCLIDGKCKVAINWSGGWHHAKKDEASGFCYLNDAVLGILRLRRKFDRILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDMSD 216          
BLAST of CX671708 vs. ExPASy Swiss-Prot
Match: HDAC8_MOUSE (Histone deacetylase 8 OS=Mus musculus GN=Hdac8 PE=1 SV=2)

HSP 1 Score: 184.496 bits (467), Expect = 5.798e-46
Identity = 86/183 (46.99%), Postives = 121/183 (66.12%), Query Frame = 1
Query:  244 PHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFG-DYFPGTGDIRD 789
            P R  M H+L+  Y L + M+++KP  A   ++  FH D Y+  L+ ++ E  +D    ++ + +G DCP  +G+F +     GG++  A  L  G C +AINW+GG HHAKK EASGFCY+ND VL IL L ++ +R+LYVD+D+HHGDGVE+AF  T +VMTVS HKF   +FPGTGD+ D
Sbjct:   35 PKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAYLQHLQKVSQEGDEDHPDSIE-YGLGYDCPATEGIFDYAAAIGGGTITAAQCLIDGKCKVAINWSGGWHHAKKDEASGFCYLNDAVLGILRLRRKFDRILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDMSD 216          
The following BLAST results are available for this feature:
BLAST of CX671708 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
HDA12_DICDI3.978e-7965.37Histone deacetylase B OS=Dictyostelium discoideum ... [more]
HDA2_CAEEL1.160e-7058.33Putative histone deacetylase 2 OS=Caenorhabditis e... [more]
PHD1_SCHPO1.917e-6556.37Histone deacetylase phd1 OS=Schizosaccharomyces po... [more]
HDA7_ARATH1.984e-6256.36Histone deacetylase 7 OS=Arabidopsis thaliana GN=H... [more]
HOS2_YEAST1.422e-6051.94Probable histone deacetylase HOS2 OS=Saccharomyces... [more]
HDAC8_DANRE1.474e-4949.28Histone deacetylase 8 OS=Danio rerio GN=hdac8 PE=2... [more]
HDAC8_XENTR2.603e-4648.63Histone deacetylase 8 OS=Xenopus tropicalis GN=hda... [more]
HDAC8_HUMAN4.439e-4646.99Histone deacetylase 8 OS=Homo sapiens GN=HDAC8 PE=... [more]
HDAC8_RAT5.798e-4646.99Histone deacetylase 8 OS=Rattus norvegicus GN=Hdac... [more]
HDAC8_MOUSE5.798e-4646.99Histone deacetylase 8 OS=Mus musculus GN=Hdac8 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_12F10_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12F10-L20-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671708 ID=CX671708; Name=CX671708; organism=Citrus sinensis; type=EST; length=790bp
CTATTCTACACGCTGCATTACGCAAGTTCAGCCCCGTCTTTTTATTCTCT
TGAGGTCTCGTCCCGTTGCATTCTTAGTTAGTGTTGGCTCTCCCAGTAAG
TGCCGGCCCCAAGAAATATTATTCATATGGACACTGGAGGCAATTCTTTA
CCATCTGGTACTGATGGCGTTAAGAGAAAGGTGTGTTATTTCTACGACCC
AGAGGTGGGCAATTACTACTATGGACAGGGTCACCCAATGAAACCCCATC
GCATTCGTATGACCCATGCCCTTCTCGCCCACTACGGCTTGCTTCAGAAC
ATGCAGGTCCTCAAACCTTTTCCTGCTAGGGAAAGGGATCTTTGCCGCTT
CCATGCCGATGATTATGTCTCCTTCCTCAGGAGTATCACCCCTGAGACTC
AGCAGGATCAGCTTAGGCAGCTCAAGCGCTTTAATGTTGGTGAAGATTGC
CCTGTCTTTGACGGTCTTTTCTCCTTCTGTCAAACTTATGCTGGGGGCTC
TGTTGGTGGTGCTGTCAAGTTGAATCACGGCCTCTGTGATATTGCTATCA
ACTGGGCCGGTGGCCTTCATCATGCTAAGAAATGTGAAGCTTCCGGATTC
TGTTATGTCAATGACATTGTCTTGGCCATTTTGGAGCTACTTAAGCAGCA
TGAGCGTGTATTATATGTAGATATTGATATCCATCATGGAGATGGCGTGG
AGGAAGCATTTTATACAACTGATAGGGTAATGACTGTTTCATTCCATAAG
TTCGGAGATTATTTTCCTGGTACAGGGGATATACGTGATA
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