CX671708
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX671708 vs. ExPASy Swiss-Prot
Match: CLR3_SCHPO (Histone deacetylase clr3 OS=Schizosaccharomyces pombe GN=clr3 PE=1 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 4.637e-11 Identity = 56/197 (28.43%), Postives = 91/197 (46.19%), Query Frame = 1 Query: 232 HPMKPHRIRMTHALLAHYGLLQNM----QVLKPFPARE---RDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSV---GGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQH----ERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKF--GDYFPGT 774 HP P R+ + G + N+ V PARE +L + H+ + + + T + + L L++ + D ++ +FC A GS AV A+ G HHA+ + GFC N++ + +L++ +RVL VD DIHHG+G + AFY V+ VS H++ G ++PGT Sbjct: 77 HPEDPRRVLRVFEAIKKAGYVSNVPSPSDVFLRIPAREATLEELLQVHSQEMYDRVTN-TEKMSHEDLANLEKIS---DSLYYNNESAFCARLACGSAIETCTAVVTGQVKNAFAVVRPPG-HHAEPHKPGGFCLFNNVSVTARSMLQRFPDKIKRVLIVDWDIHHGNGTQMAFYDDPNVLYVSLHRYENGRFYPGT 268
BLAST of CX671708 vs. ExPASy Swiss-Prot
Match: HDAC4_RAT (Histone deacetylase 4 OS=Rattus norvegicus GN=Hdac4 PE=1 SV=2) HSP 1 Score: 68.1662 bits (165), Expect = 6.056e-11 Identity = 31/75 (41.33%), Postives = 50/75 (66.67%), Query Frame = 1 Query: 568 HHAKKCEASGFCYVNDIVLAILELLKQH---ERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKF--GDYFPGTG 777 HHA++ GFCY N + +A +LL+Q ++L VD D+HHG+G ++AFY V+ +S H++ G++FPG+G Sbjct: 795 HHAEESTPMGFCYFNSVAIAA-KLLQQRLNVSKILIVDWDVHHGNGTQQAFYNDPNVLYMSLHRYDDGNFFPGSG 868
BLAST of CX671708 vs. ExPASy Swiss-Prot
Match: HDAC9_HUMAN (Histone deacetylase 9 OS=Homo sapiens GN=HDAC9 PE=1 SV=2) HSP 1 Score: 67.781 bits (164), Expect = 7.909e-11 Identity = 28/74 (37.84%), Postives = 48/74 (64.86%), Query Frame = 1 Query: 568 HHAKKCEASGFCYVNDIVLAILELLKQHE--RVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKF--GDYFPGTG 777 HHA++ A GFC+ N + + L Q ++L VD+D+HHG+G ++AFY ++ +S H++ G++FPG+G Sbjct: 782 HHAEESTAMGFCFFNSVAITAKYLRDQLNISKILIVDLDVHHGNGTQQAFYADPSILYISLHRYDEGNFFPGSG 855
BLAST of CX671708 vs. ExPASy Swiss-Prot
Match: HDAC4_MOUSE (Histone deacetylase 4 OS=Mus musculus GN=Hdac4 PE=1 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 7.909e-11 Identity = 31/75 (41.33%), Postives = 50/75 (66.67%), Query Frame = 1 Query: 568 HHAKKCEASGFCYVNDIVLAILELLKQH---ERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKF--GDYFPGTG 777 HHA++ GFCY N + +A +LL+Q ++L VD D+HHG+G ++AFY V+ +S H++ G++FPG+G Sbjct: 794 HHAEESTPMGFCYFNSVAVAA-KLLQQRLNVSKILIVDWDVHHGNGTQQAFYNDPNVLYMSLHRYDDGNFFPGSG 867
BLAST of CX671708 vs. ExPASy Swiss-Prot
Match: HDAC4_HUMAN (Histone deacetylase 4 OS=Homo sapiens GN=HDAC4 PE=1 SV=3) HSP 1 Score: 67.781 bits (164), Expect = 7.909e-11 Identity = 31/75 (41.33%), Postives = 51/75 (68.00%), Query Frame = 1 Query: 568 HHAKKCEASGFCYVNDIVLAILELLKQH---ERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKF--GDYFPGTG 777 HHA++ GFCY N + +A +LL+Q ++L VD D+HHG+G ++AFY+ V+ +S H++ G++FPG+G Sbjct: 802 HHAEESTPMGFCYFNSVAVAA-KLLQQRLSVSKILIVDWDVHHGNGTQQAFYSDPSVLYMSLHRYDDGNFFPGSG 875 The following BLAST results are available for this feature:
BLAST of CX671708 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 65
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX671708 ID=CX671708; Name=CX671708; organism=Citrus sinensis; type=EST; length=790bpback to top |