CX671708

Overview
NameCX671708
Unique NameCX671708
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length790
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671708 vs. ExPASy Swiss-Prot
Match: CLR3_SCHPO (Histone deacetylase clr3 OS=Schizosaccharomyces pombe GN=clr3 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.637e-11
Identity = 56/197 (28.43%), Postives = 91/197 (46.19%), Query Frame = 1
Query:  232 HPMKPHRIRMTHALLAHYGLLQNM----QVLKPFPARE---RDLCRFHADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSV---GGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQH----ERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKF--GDYFPGT 774
            HP  P R+      +   G + N+     V    PARE    +L + H+ +    + + T +   + L  L++ +   D   ++   +FC   A GS      AV         A+    G HHA+  +  GFC  N++ +    +L++     +RVL VD DIHHG+G + AFY    V+ VS H++  G ++PGT
Sbjct:   77 HPEDPRRVLRVFEAIKKAGYVSNVPSPSDVFLRIPAREATLEELLQVHSQEMYDRVTN-TEKMSHEDLANLEKIS---DSLYYNNESAFCARLACGSAIETCTAVVTGQVKNAFAVVRPPG-HHAEPHKPGGFCLFNNVSVTARSMLQRFPDKIKRVLIVDWDIHHGNGTQMAFYDDPNVLYVSLHRYENGRFYPGT 268          
BLAST of CX671708 vs. ExPASy Swiss-Prot
Match: HDAC4_RAT (Histone deacetylase 4 OS=Rattus norvegicus GN=Hdac4 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 6.056e-11
Identity = 31/75 (41.33%), Postives = 50/75 (66.67%), Query Frame = 1
Query:  568 HHAKKCEASGFCYVNDIVLAILELLKQH---ERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKF--GDYFPGTG 777
            HHA++    GFCY N + +A  +LL+Q     ++L VD D+HHG+G ++AFY    V+ +S H++  G++FPG+G
Sbjct:  795 HHAEESTPMGFCYFNSVAIAA-KLLQQRLNVSKILIVDWDVHHGNGTQQAFYNDPNVLYMSLHRYDDGNFFPGSG 868          
BLAST of CX671708 vs. ExPASy Swiss-Prot
Match: HDAC9_HUMAN (Histone deacetylase 9 OS=Homo sapiens GN=HDAC9 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 7.909e-11
Identity = 28/74 (37.84%), Postives = 48/74 (64.86%), Query Frame = 1
Query:  568 HHAKKCEASGFCYVNDIVLAILELLKQHE--RVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKF--GDYFPGTG 777
            HHA++  A GFC+ N + +    L  Q    ++L VD+D+HHG+G ++AFY    ++ +S H++  G++FPG+G
Sbjct:  782 HHAEESTAMGFCFFNSVAITAKYLRDQLNISKILIVDLDVHHGNGTQQAFYADPSILYISLHRYDEGNFFPGSG 855          
BLAST of CX671708 vs. ExPASy Swiss-Prot
Match: HDAC4_MOUSE (Histone deacetylase 4 OS=Mus musculus GN=Hdac4 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.909e-11
Identity = 31/75 (41.33%), Postives = 50/75 (66.67%), Query Frame = 1
Query:  568 HHAKKCEASGFCYVNDIVLAILELLKQH---ERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKF--GDYFPGTG 777
            HHA++    GFCY N + +A  +LL+Q     ++L VD D+HHG+G ++AFY    V+ +S H++  G++FPG+G
Sbjct:  794 HHAEESTPMGFCYFNSVAVAA-KLLQQRLNVSKILIVDWDVHHGNGTQQAFYNDPNVLYMSLHRYDDGNFFPGSG 867          
BLAST of CX671708 vs. ExPASy Swiss-Prot
Match: HDAC4_HUMAN (Histone deacetylase 4 OS=Homo sapiens GN=HDAC4 PE=1 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 7.909e-11
Identity = 31/75 (41.33%), Postives = 51/75 (68.00%), Query Frame = 1
Query:  568 HHAKKCEASGFCYVNDIVLAILELLKQH---ERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKF--GDYFPGTG 777
            HHA++    GFCY N + +A  +LL+Q     ++L VD D+HHG+G ++AFY+   V+ +S H++  G++FPG+G
Sbjct:  802 HHAEESTPMGFCYFNSVAVAA-KLLQQRLSVSKILIVDWDVHHGNGTQQAFYSDPSVLYMSLHRYDDGNFFPGSG 875          
The following BLAST results are available for this feature:
BLAST of CX671708 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CLR3_SCHPO4.637e-1128.43Histone deacetylase clr3 OS=Schizosaccharomyces po... [more]
HDAC4_RAT6.056e-1141.33Histone deacetylase 4 OS=Rattus norvegicus GN=Hdac... [more]
HDAC9_HUMAN7.909e-1137.84Histone deacetylase 9 OS=Homo sapiens GN=HDAC9 PE=... [more]
HDAC4_MOUSE7.909e-1141.33Histone deacetylase 4 OS=Mus musculus GN=Hdac4 PE=... [more]
HDAC4_HUMAN7.909e-1141.33Histone deacetylase 4 OS=Homo sapiens GN=HDAC4 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_12F10_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12F10-L20-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671708 ID=CX671708; Name=CX671708; organism=Citrus sinensis; type=EST; length=790bp
CTATTCTACACGCTGCATTACGCAAGTTCAGCCCCGTCTTTTTATTCTCT
TGAGGTCTCGTCCCGTTGCATTCTTAGTTAGTGTTGGCTCTCCCAGTAAG
TGCCGGCCCCAAGAAATATTATTCATATGGACACTGGAGGCAATTCTTTA
CCATCTGGTACTGATGGCGTTAAGAGAAAGGTGTGTTATTTCTACGACCC
AGAGGTGGGCAATTACTACTATGGACAGGGTCACCCAATGAAACCCCATC
GCATTCGTATGACCCATGCCCTTCTCGCCCACTACGGCTTGCTTCAGAAC
ATGCAGGTCCTCAAACCTTTTCCTGCTAGGGAAAGGGATCTTTGCCGCTT
CCATGCCGATGATTATGTCTCCTTCCTCAGGAGTATCACCCCTGAGACTC
AGCAGGATCAGCTTAGGCAGCTCAAGCGCTTTAATGTTGGTGAAGATTGC
CCTGTCTTTGACGGTCTTTTCTCCTTCTGTCAAACTTATGCTGGGGGCTC
TGTTGGTGGTGCTGTCAAGTTGAATCACGGCCTCTGTGATATTGCTATCA
ACTGGGCCGGTGGCCTTCATCATGCTAAGAAATGTGAAGCTTCCGGATTC
TGTTATGTCAATGACATTGTCTTGGCCATTTTGGAGCTACTTAAGCAGCA
TGAGCGTGTATTATATGTAGATATTGATATCCATCATGGAGATGGCGTGG
AGGAAGCATTTTATACAACTGATAGGGTAATGACTGTTTCATTCCATAAG
TTCGGAGATTATTTTCCTGGTACAGGGGATATACGTGATA
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