CX671704

Overview
NameCX671704
Unique NameCX671704
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length800
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5086 contig Csv1_Contig5086:1..800. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671704 vs. ExPASy Swiss-Prot
Match: UBIB_PSESM (Probable ubiquinone biosynthesis protein ubiB OS=Pseudomonas syringae pv. tomato GN=ubiB PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.327e-21
Identity = 64/205 (31.22%), Postives = 101/205 (49.27%), Query Frame = 2
Query:   23 VAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVN--GGRLIFYDFGMMGSISPNIREGLLETFYGVYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPL 631
            V +  +    +Y E+D  +EAAN+     NF+  D + VP ++W++  P++L ME + G+++  +  L +   D K L    VE +  QI    FFHAD HPGNI V  VN    + I  D G++GS++P  ++ L    +  +++D  +V Q  +  G  VP          A+  LN FE  +         T  E  F+KPL
Sbjct:  190 VQVVMDYEKTIYDELDLLREAANSSQLRRNFEGSDLLYVPQVYWDWCRPKVLVMERIYGLQVTDMAGLADQRTDMKMLAERGVEIFFTQIFRDSFFHADMHPGNIFVSTVNPWAPKYIAIDCGIVGSLTPEDQDYLARNLFAFFKRDYRRVAQLHIDSG-WVP----------AETKLNEFEAAIR--------TVCEPIFEKPL 375          
BLAST of CX671704 vs. ExPASy Swiss-Prot
Match: UBIB_PSEPF (Probable ubiquinone biosynthesis protein ubiB OS=Pseudomonas fluorescens (strain Pf0-1) GN=ubiB PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.327e-21
Identity = 64/205 (31.22%), Postives = 101/205 (49.27%), Query Frame = 2
Query:   23 VAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVN--GGRLIFYDFGMMGSISPNIREGLLETFYGVYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPL 631
            V +  +    +Y E+D  +EAANA     NF+    + VP ++W++  P++L ME + GI++  + +L +   D K L    VE +  Q+    FFHAD HPGNI V  VN    + I  D G++GS++P  ++ L    +  +++D  +V Q  +  G  VP          A+  LN FE  +         T  E  F+KPL
Sbjct:  190 VDVVSDYEKTIYDELDLLREAANASQLKRNFEGSPLLYVPQVYWDWCRPKVLVMERIYGIQVTDLATLADQRTDMKMLAERGVEIFFTQVFRDSFFHADMHPGNIFVSTVNPWSPQYIAIDCGIVGSLTPEDQDYLARNLFAFFKRDYRRVAQLHIDSG-WVP----------AETKLNEFEAAIR--------TVCEPIFEKPL 375          
BLAST of CX671704 vs. ExPASy Swiss-Prot
Match: UBIB_PSEFS (Probable ubiquinone biosynthesis protein ubiB OS=Pseudomonas fluorescens (strain SBW25) GN=ubiB PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.327e-21
Identity = 66/207 (31.88%), Postives = 104/207 (50.24%), Query Frame = 2
Query:   17 DWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVN--GGRLIFYDFGMMGSISPNIREGLLETFYGVYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPL 631
            D VA Y++    +Y E+D  +EAANA     NF+    + VP ++W++  P++L ME + G+++  + +L +   D K L    VE +  Q+    FFHAD HPGNI V  VN    + I  D G++GS++P  ++ L    +  +++D  +V Q  +  G  VP          A+  LN FE  +         T  E  F+KPL
Sbjct:  191 DVVADYEK---TIYDELDLLREAANASQLKRNFEGSPLLYVPQVYWDWCRPKVLVMERIYGVQVTDLATLADQRTDMKMLAERGVEIFFTQVFRDSFFHADMHPGNIFVSTVNPWSPQYIAIDCGIVGSLTPEDQDYLARNLFAFFKRDYRRVAQLHIDSG-WVP----------AETKLNEFEAAIR--------TVCEPIFEKPL 375          
BLAST of CX671704 vs. ExPASy Swiss-Prot
Match: UBIB_XYLFA (Probable ubiquinone biosynthesis protein ubiB OS=Xylella fastidiosa GN=ubiB PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.733e-21
Identity = 77/259 (29.73%), Postives = 116/259 (44.79%), Query Frame = 2
Query:   29 IYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDD----VNGGRLIFYDFGMMGSISPNIREGLLETFYGVYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDP 793
            I  E  + L  E+D  +E ANA +    ++  D + VP + W +T  Q+LT+E + GI  + I  LD  G+DRK L    +  +  Q+    FFHAD H GNI VD      +  R I  DFG+MG +S   +  L E F  ++ KD  ++ +  V+ G + P      VR          EE  AA R     +  E  F +PLS+          LA +   L  +A             + +    ++G+G+ LDP
Sbjct:  188 IVAEIETTLAAELDLQREGANASVLRRFWEASDDIYVPEVIWSHTAEQVLTLERMYGIPSDDIALLDASGIDRKALSSKGIRVFYTQVFRDNFFHADAHSGNIWVDSDPARKSNPRFIALDFGIMGQLSQKDQYYLAENFMAIFHKDYRRIAELHVEAGWIPP-----HVR---------IEELEAAAR-----SVCEPYFTRPLSQIS--------LAEVLMKLFHVARRYQLTLQPQLILLQKTLLNIEGVGRQLDP 419          
BLAST of CX671704 vs. ExPASy Swiss-Prot
Match: UBIB_PSE14 (Probable ubiquinone biosynthesis protein ubiB OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=ubiB PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.733e-21
Identity = 64/205 (31.22%), Postives = 101/205 (49.27%), Query Frame = 2
Query:   23 VAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVN--GGRLIFYDFGMMGSISPNIREGLLETFYGVYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPL 631
            V +  +    +Y E+D  +EAAN+     NF+  D + VP ++W++  P++L ME + G+++  +  L +   D K L    VE +  QI    FFHAD HPGNI V  VN    + I  D G++GS++P  ++ L    +  +++D  +V Q  +  G  VP          A+  LN FE  +         T  E  F+KPL
Sbjct:  190 VQVVMDYEKTIYDELDLLREAANSSQLRRNFEGSDLLYVPQVYWDWCRPKVLVMERIYGLQVTDMAGLADQRTDMKLLAERGVEIFFTQIFRDSFFHADMHPGNIFVSTVNPWSPKYIAIDCGIVGSLTPEDQDYLARNLFAFFKRDYRRVAQLHIDSG-WVP----------AETKLNEFEAAIR--------TVCEPIFEKPL 375          
BLAST of CX671704 vs. ExPASy Swiss-Prot
Match: UBIB_NEIMA (Probable ubiquinone biosynthesis protein ubiB OS=Neisseria meningitidis serogroup A GN=ubiB PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.264e-21
Identity = 56/164 (34.15%), Postives = 88/164 (53.66%), Query Frame = 2
Query:    2 DGAKRDWVAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLETFYGVYEKDADKVLQAMVQMG 493
            DG +   + +  E    L+ E+D  +EAANA     NF + + + VP +F++Y T  +LT+E++ G  +  I  L   G+D  +L  Y VE +  Q+   GFFHAD HPGNI V   N  R I  DFG++G+++   +  L   F   + +D  +V  A ++ G
Sbjct:  178 DGRRLKPLEVVAEFDKYLHDELDLMREAANAGQLGRNFHNSNMLIVPKVFYDYCTSDVLTIEWMDGTPVADIAKLKADGIDLHKLADYGVEIFFTQVFRDGFFHADMHPGNILVAADN--RYIALDFGIVGTLTDYDKRYLAINFLAFFNRDYRRVATAHIESG 339          
BLAST of CX671704 vs. ExPASy Swiss-Prot
Match: UBIB_XYLFT (Probable ubiquinone biosynthesis protein ubiB OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=ubiB PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.956e-21
Identity = 76/259 (29.34%), Postives = 116/259 (44.79%), Query Frame = 2
Query:   29 IYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDD----VNGGRLIFYDFGMMGSISPNIREGLLETFYGVYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDP 793
            I  E  + L  E+D  +E ANA +    ++  D + VP + W +T  ++LT+E + GI  + I  LD  G+DRK L    +  +  Q+    FFHAD H GNI VD      +  R I  DFG+MG +S   +  L E F  ++ KD  ++ +  V+ G + P      VR          EE  AA R     +  E  F +PLS+          LA +   L  +A             + +    ++G+G+ LDP
Sbjct:  188 IVAEIETTLAAELDLQREGANASVLRRFWEASDDIYVPEVIWSHTAERVLTLERMYGIPSDDIALLDASGIDRKALSSKGIRVFYTQVFRDNFFHADAHSGNIWVDSDPARKSNPRFIVLDFGIMGQLSQKDQYYLAENFMAIFHKDYRRIAELHVEAGWIPP-----HVR---------IEELEAAAR-----SVCEPYFTRPLSQIS--------LAEVMMKLFHVARRYQLTLQPQLILLQKTLLNIEGVGRQLDP 419          
BLAST of CX671704 vs. ExPASy Swiss-Prot
Match: UBIB_XYLF2 (Probable ubiquinone biosynthesis protein ubiB OS=Xylella fastidiosa (strain M23) GN=ubiB PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.956e-21
Identity = 76/259 (29.34%), Postives = 116/259 (44.79%), Query Frame = 2
Query:   29 IYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDD----VNGGRLIFYDFGMMGSISPNIREGLLETFYGVYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDP 793
            I  E  + L  E+D  +E ANA +    ++  D + VP + W +T  ++LT+E + GI  + I  LD  G+DRK L    +  +  Q+    FFHAD H GNI VD      +  R I  DFG+MG +S   +  L E F  ++ KD  ++ +  V+ G + P      VR          EE  AA R     +  E  F +PLS+          LA +   L  +A             + +    ++G+G+ LDP
Sbjct:  188 IVAEIETTLAAELDLQREGANASVLRRFWEASDDIYVPEVIWSHTAERVLTLERMYGIPSDDIALLDASGIDRKALSSKGIRVFYTQVFRDNFFHADAHSGNIWVDSDPARKSNPRFIVLDFGIMGQLSQKDQYYLAENFMAIFHKDYRRIAELHVEAGWIPP-----HVR---------IEELEAAAR-----SVCEPYFTRPLSQIS--------LAEVMMKLFHVARRYQLTLQPQLILLQKTLLNIEGVGRQLDP 419          
BLAST of CX671704 vs. ExPASy Swiss-Prot
Match: UBIB_PSEF5 (Probable ubiquinone biosynthesis protein ubiB OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=ubiB PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.586e-21
Identity = 63/205 (30.73%), Postives = 100/205 (48.78%), Query Frame = 2
Query:   23 VAIYDECASVLYQEIDYTQEAANAELFASNFKDMDYVKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVN--GGRLIFYDFGMMGSISPNIREGLLETFYGVYEKDADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPL 631
            V +  +    +Y E+D  +EAANA     NF+    + VP ++W++  P++L ME + GI++  + +L +   D K L    VE +  Q+    FFHAD HPGNI V  V     + I  D G++GS++P  ++ L    +  +++D  +V Q  +  G  VP          A+  LN FE  +         T  E  F+KPL
Sbjct:  190 VDVVSDYEKTIYDELDLLREAANASQLKRNFEGSPLLYVPQVYWDWCRPKVLVMERIYGIQVTDLATLADQRTDMKMLAERGVEIFFTQVFRDSFFHADMHPGNIFVSTVQPWSPQYIAIDCGIVGSLTPEDQDYLARNLFAFFKRDYRRVAQLHIDSG-WVP----------AETKLNEFEAAIR--------TVCEPIFEKPL 375          
BLAST of CX671704 vs. ExPASy Swiss-Prot
Match: Y647_MYCTU (Uncharacterized protein Rv0647c/MT0675 OS=Mycobacterium tuberculosis GN=Rv0647c PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.123e-20
Identity = 76/259 (29.34%), Postives = 118/259 (45.56%), Query Frame = 2
Query:   44 ASVLYQEIDYTQEAANAELFASNFKDMDY---VKVPTIFWEYTTPQILTMEYVPGIKINRIQSLDELGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLETFYGVYEKD----ADKVLQAMVQMGVLVPTGDTTAVRRTAQFFLNSFEERLAAQRKEREITTQELGFKKPLSKEEKIEKKKQRLAAIGEDLLAIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRF 799
            A  L +E+D+  EA + E + S+         ++VP + W++TT ++LTME V GI+I+   ++ + G D   L +  + S  E  L HG FH D H GN+ VD+   GR++F+DFG+MG I P  R  L E  Y +  K     A K++  M  +G + P  +T A +   +F                 +T Q LG                  A IG  L A+A     + P     + + F  ++   K L PR+
Sbjct:  233 ADNLAEELDFRLEAQSMEAWVSHLHASPLGKNIRVPQVHWDFTTERVLTMERVHGIRIDNAAAIRKAGFDGVELVKALLFSVFEGGLRHGLFHGDLHAGNLYVDE--AGRIVFFDFGIMGRIDPRTRWLLRELVYALLVKKDHAAAGKIVVLMGAVGTMKP--ETQAAKDLERF--------------ATPLTMQSLG--------------DMSYADIGRQLSALADAYDVKLPRELVLIGKQFLYVERYMKLLAPRW 459          
The following BLAST results are available for this feature:
BLAST of CX671704 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 180
Match NameE-valueIdentityDescription
UBIB_PSESM1.327e-2131.22Probable ubiquinone biosynthesis protein ubiB OS=P... [more]
UBIB_PSEPF1.327e-2131.22Probable ubiquinone biosynthesis protein ubiB OS=P... [more]
UBIB_PSEFS1.327e-2131.88Probable ubiquinone biosynthesis protein ubiB OS=P... [more]
UBIB_XYLFA1.733e-2129.73Probable ubiquinone biosynthesis protein ubiB OS=X... [more]
UBIB_PSE141.733e-2131.22Probable ubiquinone biosynthesis protein ubiB OS=P... [more]
UBIB_NEIMA2.264e-2134.15Probable ubiquinone biosynthesis protein ubiB OS=N... [more]
UBIB_XYLFT2.956e-2129.34Probable ubiquinone biosynthesis protein ubiB OS=X... [more]
UBIB_XYLF22.956e-2129.34Probable ubiquinone biosynthesis protein ubiB OS=X... [more]
UBIB_PSEF56.586e-2130.73Probable ubiquinone biosynthesis protein ubiB OS=P... [more]
Y647_MYCTU1.123e-2029.34Uncharacterized protein Rv0647c/MT0675 OS=Mycobact... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_12F07_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12F07-L14-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671704 ID=CX671704; Name=CX671704; organism=Citrus sinensis; type=EST; length=800bp
AGATGGTGCAAAGAGAGATTGGGTTGCCATATATGATGAATGTGCTAGTG
TGTTATATCAGGAAATTGATTACACCCAGGAAGCTGCTAATGCTGAACTT
TTTGCTAGTAATTTCAAAGACATGGATTACGTAAAAGTCCCAACGATATT
TTGGGAATACACCACACCACAGATTTTGACCATGGAGTATGTGCCGGGGA
TCAAAATAAACAGGATACAATCTTTAGATGAATTGGGTGTTGATCGAAAA
AGGTTGGGTCGATATGCGGTTGAATCTTACTTGGAACAAATTCTTTCACA
TGGTTTTTTTCATGCTGACCCTCATCCTGGAAATATCGCTGTAGATGATG
TAAATGGTGGAAGATTGATCTTCTATGATTTTGGTATGATGGGAAGTATT
AGTCCAAACATTAGAGAAGGTCTGCTTGAAACATTTTACGGAGTTTACGA
GAAGGATGCAGACAAGGTCCTTCAGGCAATGGTTCAAATGGGTGTTCTTG
TCCCTACTGGAGATACAACAGCTGTCAGGCGAACAGCACAGTTCTTCCTT
AACAGTTTTGAAGAGCGTCTTGCTGCACAAAGAAAAGAAAGAGAAATAAC
GACCCAAGAACTTGGCTTTAAAAAGCCATTGAGCAAGGAGGAAAAGATTG
AGAAAAAGAAGCAACGCCTTGCTGCAATAGGGGAAGATTTATTGGCCATT
GCAGCTGATCAACCTTTCCGATTTCCAGCAACATTCACATTTGTTGTCAG
AGCATTTTCAGTTTTAGATGGCATTGGGAAGGGCCTTGATCCTCGGTTTG
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