CX671688

Overview
NameCX671688
Unique NameCX671688
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC1_DEBHA (Superoxide dismutase [Cu-Zn] 1 OS=Debaryomyces hansenii GN=SOD1 PE=1 SV=4)

HSP 1 Score: 125.946 bits (315), Expect = 2.034e-28
Identity = 62/124 (50.00%), Postives = 78/124 (62.90%), Query Frame = 1
Query:   88 LISGATSVKGSLHFVQGPNG-VTHVKGKITGLKPG-LHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            ++ G + V G ++F Q      T +  +I+G     L GFH+H  GD TNGC S GPHFNP  K+HGAP D+ RH GDLGN+     GVA+ S  D  + L GQ+SILGR VV+HA  DDLGKG
Sbjct:    7 VLRGDSKVSGVVNFEQSSESDPTTITWEISGNDANALRGFHVHTFGDNTNGCTSAGPHFNPFTKEHGAPEDDNRHVGDLGNVTTDTSGVAKGSKQDLFVKLIGQNSILGRTVVIHAGTDDLGKG 130          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_YARLI (Superoxide dismutase [Cu-Zn] OS=Yarrowia lipolytica GN=SOD1 PE=3 SV=3)

HSP 1 Score: 125.561 bits (314), Expect = 2.657e-28
Identity = 62/127 (48.82%), Postives = 82/127 (64.57%), Query Frame = 1
Query:   88 LISGATSVKGSLHFVQ----GPNGVTHVKGKITGLKPGLH-GFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            ++ G + V G++ F Q    GP  VT+    I G  P    GFH+H  GD TNGC S GPHFNP KK+HG P+D+ERH GDLGN+    +GVA+  + D ++ L+G +SI+GR VV+H   DDLGKG
Sbjct:    7 VLRGDSKVSGTVTFEQDSESGPVTVTY---DIKGNDPNAERGFHVHEFGDNTNGCTSAGPHFNPFKKNHGGPTDSERHVGDLGNVKTDSEGVAKGVLKDSLLKLTGDNSIVGRTVVIHGGEDDLGKG 130          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_DROOB (Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosophila obscura GN=Sod PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.470e-28
Identity = 61/108 (56.48%), Postives = 71/108 (65.74%), Query Frame = 1
Query:  112 KGSLHFVQGPNGV-THVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHAD 432
            KG++ F Q  +     V G++ GL  GLHGFH+H  GD TNGC S+GPHFNP  K+HGAP+D  RH GDLGNI A  D    VSI D  I L G  SI+GR VVVHAD
Sbjct:    6 KGTVFFEQETSEAPVKVTGEVLGLTKGLHGFHVHEFGDNTNGCMSSGPHFNPRSKEHGAPTDENRHLGDLGNIQAAGDSPTAVSITDSKITLFGADSIIGRTVVVHAD 113          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_DROTO (Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosophila tolteca GN=Sod PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.319e-27
Identity = 60/108 (55.56%), Postives = 72/108 (66.67%), Query Frame = 1
Query:  112 KGSLHFVQGPNGV-THVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHAD 432
            KG++ F Q  +     V G++ GL  GLHGFH+H  G+ TNGC S+GPHFNP  K+HGAP+D  RH GDLGNI A  D    VSI D  I L G +SI+GR VVVHAD
Sbjct:    6 KGTVFFEQETSEAPVKVTGEVLGLTKGLHGFHVHEFGNNTNGCMSSGPHFNPGNKEHGAPTDGNRHLGDLGNIQAAGDSPTAVSITDSKITLFGANSIIGRTVVVHAD 113          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_YEAST (Superoxide dismutase [Cu-Zn] OS=Saccharomyces cerevisiae GN=SOD1 PE=1 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 1.722e-27
Identity = 62/124 (50.00%), Postives = 76/124 (61.29%), Query Frame = 1
Query:   88 LISGATSVKGSLHFVQGPNGV-THVKGKITGLKPGLH-GFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            ++ G   V G + F Q      T V  +I G  P    GFHIH  GD TNGC S GPHFNP KK HGAP+D  RH GD+GN+    +GVA+ S  D +I L G  S++GR+VV+HA  DDLGKG
Sbjct:    7 VLKGDAGVSGVVKFEQASESEPTTVSYEIAGNSPNAERGFHIHEFGDATNGCVSAGPHFNPFKKTHGAPTDEVRHVGDMGNVKTDENGVAKGSFKDSLIKLIGPTSVVGRSVVIHAGQDDLGKG 130          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_DROMD (Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosophila madeirensis GN=Sod PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.722e-27
Identity = 60/108 (55.56%), Postives = 70/108 (64.81%), Query Frame = 1
Query:  112 KGSLHFVQGPNGV-THVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHAD 432
            KG + F Q  +     V G++ GL  GLHGFH+H  GD TNGC S+GPH+NP  K+HGAP+D  RH GDLGNI A  D    VSI D  I L G  SI+GR VVVHAD
Sbjct:    6 KGIVFFEQETSEAPVKVTGEVLGLAKGLHGFHVHEFGDNTNGCMSSGPHYNPRNKEHGAPTDENRHLGDLGNIQAAGDSPTAVSITDSKITLFGADSIIGRTVVVHAD 113          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODE_CAEEL (Extracellular superoxide dismutase [Cu-Zn] OS=Caenorhabditis elegans GN=sod-4 PE=1 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 2.249e-27
Identity = 58/117 (49.57%), Postives = 76/117 (64.96%), Query Frame = 1
Query:  103 TSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            T + G++ F Q       + G ++GL  G HGFHIH  GDT NGC S G H+NP K  HGAP D+ RH GDLGNI +   G   +S++D +  LSGQ+SI+GR+VV+H   DDLG+G
Sbjct:   38 TELIGTIDFDQS-GSFLKLNGSVSGLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHKLSHGAPDDSNRHIGDLGNIESPASGDTLISVSDSLASLSGQYSIIGRSVVIHEKTDDLGRG 153          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_DROPE (Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosophila persimilis GN=Sod PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.249e-27
Identity = 61/108 (56.48%), Postives = 70/108 (64.81%), Query Frame = 1
Query:  112 KGSLHFVQGPNGV-THVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHAD 432
            KG++ F Q  +     V G+  GL  GLHGFH+H  GD TNGC S+GPHFNP  K+HGAP+D  RH GDLGNI A  D    VSI D  I L G  SI+GR VVVHAD
Sbjct:    6 KGTVFFEQETSEAPVKVTGEGLGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPRNKEHGAPTDENRHLGDLGNIQAAGDSPTAVSITDSKITLFGADSIIGRTVVVHAD 113          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_DROPB (Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosophila pseudoobscura bogotana GN=Sod PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.249e-27
Identity = 61/108 (56.48%), Postives = 70/108 (64.81%), Query Frame = 1
Query:  112 KGSLHFVQGPNGV-THVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHAD 432
            KG++ F Q  +     V G+  GL  GLHGFH+H  GD TNGC S+GPHFNP  K+HGAP+D  RH GDLGNI A  D    VSI D  I L G  SI+GR VVVHAD
Sbjct:    6 KGTVFFEQETSEAPVKVTGEGLGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPRNKEHGAPTDENRHLGDLGNIQAAGDSPTAVSITDSKITLFGADSIIGRTVVVHAD 113          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_DROMI (Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosophila miranda GN=Sod PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.249e-27
Identity = 61/108 (56.48%), Postives = 70/108 (64.81%), Query Frame = 1
Query:  112 KGSLHFVQGPNGV-THVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHAD 432
            KG++ F Q  +     V G+  GL  GLHGFH+H  GD TNGC S+GPHFNP  K+HGAP+D  RH GDLGNI A  D    VSI D  I L G  SI+GR VVVHAD
Sbjct:    6 KGTVFFEQETSEAPVKVTGEGLGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPRNKEHGAPTDENRHLGDLGNIQAAGDSPTAVSITDSKITLFGADSIIGRTVVVHAD 113          
The following BLAST results are available for this feature:
BLAST of CX671688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
SODC1_DEBHA2.034e-2850.00Superoxide dismutase [Cu-Zn] 1 OS=Debaryomyces han... [more]
SODC_YARLI2.657e-2848.82Superoxide dismutase [Cu-Zn] OS=Yarrowia lipolytic... [more]
SODC_DROOB3.470e-2856.48Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosoph... [more]
SODC_DROTO1.319e-2755.56Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosoph... [more]
SODC_YEAST1.722e-2750.00Superoxide dismutase [Cu-Zn] OS=Saccharomyces cere... [more]
SODC_DROMD1.722e-2755.56Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosoph... [more]
SODE_CAEEL2.249e-2749.57Extracellular superoxide dismutase [Cu-Zn] OS=Caen... [more]
SODC_DROPE2.249e-2756.48Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosoph... [more]
SODC_DROPB2.249e-2756.48Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosoph... [more]
SODC_DROMI2.249e-2756.48Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosoph... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_12E09_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12E09-J18-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671688 ID=CX671688; Name=CX671688; organism=Citrus sinensis; type=EST; length=705bp
ATTTGATATCGAGAAGACCCAGATAGAGAAAGCAAGAGATAAAAAATGGA
AACAGGGGCTACAAAAGCCACAGTGAAAGCCGTGGCTCTCATTTCTGGTG
CTACCAGCGTTAAAGGCTCTCTTCACTTTGTTCAAGGACCCAACGGAGTT
ACACATGTGAAAGGGAAGATTACAGGACTGAAGCCAGGCCTTCATGGCTT
CCATATTCACGCCCTCGGTGACACCACTAATGGTTGCAATTCTACTGGAC
CTCATTTCAATCCATTGAAGAAGGATCATGGGGCTCCCAGTGATAACGAG
CGGCACACTGGTGATTTGGGAAACATTGTTGCAGGCCCTGATGGAGTTGC
TGAGGTTTCAATTGCTGACAGGATGATTCCTCTGAGCGGGCAACACTCAA
TATTGGGGAGGGCTGTTGTTGTGCACGCTGATCCTGATGATCTTGGAAAA
GGCAAGTTTAGTAGTTTGTCCTTAATTTTGATTACAAATCTTTTTTATTA
CAAGGATACAGCTTATTGGTACAAATGTACACAAAAGTATGTTTATTTTA
AACTGTCAGTTCTTTTGGAGAATAATATGTCAGGTTGAAGCTTTAGGTAA
GGATGTACAATTTTTTTTTCTTCCTCTTAGTTTCAGGTACATTGGATTCT
TTACAACTACTTTGAAGAGTTTAGTTTTAAATGTAAGAAATTCAGTGTAG
TTTGT
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