CX671688

Overview
NameCX671688
Unique NameCX671688
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_HUMLT (Superoxide dismutase [Cu-Zn] OS=Humicola lutea PE=1 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 2.938e-27
Identity = 61/124 (49.19%), Postives = 76/124 (61.29%), Query Frame = 1
Query:   88 LISGATSVKGSLHFVQGPNGV-THVKGKITGLKPGLH-GFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            ++ G + + G++ F Q      T V   ITG  P    G HIH  GD TNGC S GPH+NP KK HGAP+D  RH GDLGNI    +G A  S+ D++I + G  SILGR +VVHA  DDLG+G
Sbjct:    7 VLRGDSKITGTVTFEQANESAPTTVSWNITGHDPNAERGMHIHQFGDNTNGCTSAGPHYNPFKKTHGAPTDEVRHVGDLGNIKTDAEGNAVGSVQDKLIKVIGAESILGRTIVVHAGTDDLGRG 130          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_PAETN (Superoxide dismutase [Cu-Zn] OS=Paecilomyces tenuipes GN=SOD1 PE=3 SV=3)

HSP 1 Score: 121.709 bits (304), Expect = 3.837e-27
Identity = 62/124 (50.00%), Postives = 75/124 (60.48%), Query Frame = 1
Query:   88 LISGATSVKGSLHFVQ-GPNGVTHVKGKITGLKPGLH-GFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            ++ G   V G++ F Q   +  T +   +TG  P    GFHIH  GD TNGC S GPHFNP  K HGAP+D  RH GDLGN+     G A+ SI D  + L G HS++GR VVVHA  DDLGKG
Sbjct:    7 VLRGDAKVGGTVTFEQESESAPTTITYDLTGNDPNAERGFHIHTFGDNTNGCTSAGPHFNPHGKTHGAPTDAARHVGDLGNVKTDAQGNAKGSIQDSQVKLIGPHSVIGRTVVVHAGTDDLGKG 130          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_NPVAC (Putative superoxide dismutase [Cu-Zn] OS=Autographa californica nuclear polyhedrosis virus GN=SOD PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.837e-27
Identity = 61/122 (50.00%), Postives = 79/122 (64.75%), Query Frame = 1
Query:   88 LISGATSVKGSLHFVQ-GPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNI-VAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLG 447
            +ISG   V G ++F Q   N    + G +  L  GLHGFH+H  GDT+NGC S G HFNP  +DHGAP    RH GDLGNI  AG + + EV++ D ++ L G H+I+GR++VVH D DDLG
Sbjct:    6 IISG--DVHGKIYFQQESANQPLKISGYLLNLPRGLHGFHVHEYGDTSNGCTSAGEHFNPTNEDHGAPDAEIRHVGDLGNIKSAGYNSLTEVNMMDNVMSLYGPHNIIGRSLVVHTDKDDLG 125          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_EMENI (Superoxide dismutase [Cu-Zn] OS=Emericella nidulans GN=sodA PE=1 SV=3)

HSP 1 Score: 121.324 bits (303), Expect = 5.011e-27
Identity = 62/124 (50.00%), Postives = 75/124 (60.48%), Query Frame = 1
Query:   88 LISGATSVKGSLHFVQGP-NGVTHVKGKITGLKPGLH-GFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            ++ G + V G++ F Q   N  T V   ITG  P    GFHIH  GD TNGC S GPHFNP  K HGAP D  RH GDLGN     +G ++ S  D++I L G  S+LGR +VVHA  DDLG+G
Sbjct:    7 VLRGDSKVSGTVTFEQADENSNTTVSWNITGNDPNAERGFHIHQFGDNTNGCTSAGPHFNPFGKTHGAPEDEVRHVGDLGNFKTDAEGNSKGSKTDKLIKLIGAESVLGRTLVVHAGTDDLGRG 130          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_ASPFU (Superoxide dismutase [Cu-Zn] OS=Aspergillus fumigatus GN=sodC PE=2 SV=3)

HSP 1 Score: 120.553 bits (301), Expect = 8.547e-27
Identity = 61/124 (49.19%), Postives = 75/124 (60.48%), Query Frame = 1
Query:   88 LISGATSVKGSLHFVQGP-NGVTHVKGKITGLKPGL-HGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            ++ G + + G++ F Q   N  T V   I G  P    GFH+H  GD TNGC S GPHFNP  K HGAP D+ERH GDLGN     +G A  S  D++I L G  S+LGR +VVHA  DDLG+G
Sbjct:    7 VLRGDSKITGTVTFEQADENSPTTVSWNIKGNDPNAKRGFHVHQFGDNTNGCTSAGPHFNPYGKTHGAPEDSERHVGDLGNFETDAEGNAVGSKQDKLIKLIGAESVLGRTLVVHAGTDDLGRG 130          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_NPVOP (Putative superoxide dismutase [Cu-Zn] OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=SOD PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.116e-26
Identity = 59/121 (48.76%), Postives = 77/121 (63.64%), Query Frame = 1
Query:  100 ATSVKGSLHFVQG-PNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNI-VAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKGK 456
            A    G ++F QG P+    + G +  L  GLHGFH+H  GDT+NGC S G HFNP ++ HGAP   ERH GDLGN+  AG   +  + ++D +I L G  SILGR++VVH D DDLG G+
Sbjct:    8 AGEASGRIYFKQGAPDEPVSITGYLLNLPRGLHGFHVHEFGDTSNGCTSAGEHFNPTRQRHGAPDAAERHVGDLGNVRSAGCTALTAIHMSDNVITLFGPLSILGRSLVVHTDRDDLGLGE 128          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_CORMI (Superoxide dismutase [Cu-Zn] OS=Cordyceps militaris GN=SOD1 PE=2 SV=3)

HSP 1 Score: 120.168 bits (300), Expect = 1.116e-26
Identity = 62/124 (50.00%), Postives = 74/124 (59.68%), Query Frame = 1
Query:   88 LISGATSVKGSLHFVQ-GPNGVTHVKGKITGLKPGLH-GFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            ++ G   V G++ F Q   +  T +   ITG  P    GFHIH  GD TNGC S GPHFNP  K HGAP+D  RH GDLGNI     G A+ S+ D  + L G HS++GR VVVH   DDLGKG
Sbjct:    7 VLRGDAKVAGTVTFEQESESAPTTITWDITGNDPNAERGFHIHTFGDNTNGCTSAGPHFNPHGKTHGAPTDAARHVGDLGNIKTDGQGNAKGSVQDSHVKLIGPHSVVGRTVVVHGGTDDLGKG 130          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_CANGA (Superoxide dismutase [Cu-Zn] OS=Candida glabrata GN=SOD1 PE=3 SV=3)

HSP 1 Score: 120.168 bits (300), Expect = 1.116e-26
Identity = 60/108 (55.56%), Postives = 69/108 (63.89%), Query Frame = 1
Query:  133 QGPNGVTHVKGKITGLKPGLH-GFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            Q P  +T+   +I G  P    GFHIH  GD TNGC S GPHFNP KK HGAP D  RH GDLGNI     GVA+  I D ++ L G  S++GR+VVVHA  DDLGKG
Sbjct:   26 QDPTTITY---EIAGNDPNAERGFHIHEFGDVTNGCVSAGPHFNPFKKTHGAPQDENRHVGDLGNIKTDAQGVAKGVITDSLVKLIGPTSVVGRSVVVHAGTDDLGKG 130          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_ASPNC (Superoxide dismutase [Cu-Zn] OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=sodC PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.116e-26
Identity = 61/124 (49.19%), Postives = 75/124 (60.48%), Query Frame = 1
Query:   88 LISGATSVKGSLHFVQG-PNGVTHVKGKITGLKPGLH-GFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            +I G + V G++ F Q   N  T +   ITG       GFH+H  GD TNGC S GPHFNP  K HGAP D+ERH GDLGN     +G A  S  D+++ L G  S+LGR +VVHA  DDLG+G
Sbjct:    7 VIRGDSKVSGTVTFEQANENTPTTISWNITGHDANAERGFHVHQFGDNTNGCTSAGPHFNPFGKTHGAPEDDERHVGDLGNFKTDAEGNAVGSKQDKLVKLIGAESVLGRTLVVHAGTDDLGRG 130          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_ASPNG (Superoxide dismutase [Cu-Zn] OS=Aspergillus niger GN=sodC PE=1 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.458e-26
Identity = 61/124 (49.19%), Postives = 75/124 (60.48%), Query Frame = 1
Query:   88 LISGATSVKGSLHFVQG-PNGVTHVKGKITGLKPGLH-GFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            +I G + V G++ F Q   N  T +   ITG       GFH+H  GD TNGC S GPHFNP  K HGAP D+ERH GDLGN     +G A  S  D+++ L G  S+LGR +VVHA  DDLG+G
Sbjct:    7 VIRGDSKVSGTVTFEQANENTPTTISWNITGHDANAERGFHVHQFGDNTNGCTSAGPHFNPYGKTHGAPEDDERHVGDLGNFKTDAEGNAVGSKQDKLVKLIGAESVLGRTLVVHAGTDDLGRG 130          
The following BLAST results are available for this feature:
BLAST of CX671688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
SODC_HUMLT2.938e-2749.19Superoxide dismutase [Cu-Zn] OS=Humicola lutea PE=... [more]
SODC_PAETN3.837e-2750.00Superoxide dismutase [Cu-Zn] OS=Paecilomyces tenui... [more]
SODC_NPVAC3.837e-2750.00Putative superoxide dismutase [Cu-Zn] OS=Autograph... [more]
SODC_EMENI5.011e-2750.00Superoxide dismutase [Cu-Zn] OS=Emericella nidulan... [more]
SODC_ASPFU8.547e-2749.19Superoxide dismutase [Cu-Zn] OS=Aspergillus fumiga... [more]
SODC_NPVOP1.116e-2648.76Putative superoxide dismutase [Cu-Zn] OS=Orgyia ps... [more]
SODC_CORMI1.116e-2650.00Superoxide dismutase [Cu-Zn] OS=Cordyceps militari... [more]
SODC_CANGA1.116e-2655.56Superoxide dismutase [Cu-Zn] OS=Candida glabrata G... [more]
SODC_ASPNC1.116e-2649.19Superoxide dismutase [Cu-Zn] OS=Aspergillus niger ... [more]
SODC_ASPNG1.458e-2649.19Superoxide dismutase [Cu-Zn] OS=Aspergillus niger ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_12E09_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12E09-J18-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671688 ID=CX671688; Name=CX671688; organism=Citrus sinensis; type=EST; length=705bp
ATTTGATATCGAGAAGACCCAGATAGAGAAAGCAAGAGATAAAAAATGGA
AACAGGGGCTACAAAAGCCACAGTGAAAGCCGTGGCTCTCATTTCTGGTG
CTACCAGCGTTAAAGGCTCTCTTCACTTTGTTCAAGGACCCAACGGAGTT
ACACATGTGAAAGGGAAGATTACAGGACTGAAGCCAGGCCTTCATGGCTT
CCATATTCACGCCCTCGGTGACACCACTAATGGTTGCAATTCTACTGGAC
CTCATTTCAATCCATTGAAGAAGGATCATGGGGCTCCCAGTGATAACGAG
CGGCACACTGGTGATTTGGGAAACATTGTTGCAGGCCCTGATGGAGTTGC
TGAGGTTTCAATTGCTGACAGGATGATTCCTCTGAGCGGGCAACACTCAA
TATTGGGGAGGGCTGTTGTTGTGCACGCTGATCCTGATGATCTTGGAAAA
GGCAAGTTTAGTAGTTTGTCCTTAATTTTGATTACAAATCTTTTTTATTA
CAAGGATACAGCTTATTGGTACAAATGTACACAAAAGTATGTTTATTTTA
AACTGTCAGTTCTTTTGGAGAATAATATGTCAGGTTGAAGCTTTAGGTAA
GGATGTACAATTTTTTTTTCTTCCTCTTAGTTTCAGGTACATTGGATTCT
TTACAACTACTTTGAAGAGTTTAGTTTTAAATGTAAGAAATTCAGTGTAG
TTTGT
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