CX671688

Overview
NameCX671688
Unique NameCX671688
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC4_DICDI (Superoxide dismutase [Cu-Zn] 4 OS=Dictyostelium discoideum GN=sodD PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.458e-26
Identity = 64/124 (51.61%), Postives = 78/124 (62.90%), Query Frame = 1
Query:   88 LISGATSVKGSLHFVQGPNGV-THVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDG-VAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            ++ GA  V G++ F Q   G   +V G I+GL  GLHGFHIH  GDT+NGC S G HFNP   +HG P+   RH GDLGNI + P   VA V I D +I L G  SI+GR +VVH + DDLG G
Sbjct:    7 VVKGAV-VNGTIIFSQENEGSPVYVNGTISGLSGGLHGFHIHEFGDTSNGCLSAGAHFNPFHVEHGGPNSAIRHVGDLGNITSCPSSKVANVLIQDNVISLFGDLSIIGRTLVVHENQDDLGLG 129          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_CLAPU (Superoxide dismutase [Cu-Zn] OS=Claviceps purpurea GN=SOD1 PE=3 SV=3)

HSP 1 Score: 118.242 bits (295), Expect = 4.242e-26
Identity = 60/124 (48.39%), Postives = 74/124 (59.68%), Query Frame = 1
Query:   88 LISGATSVKGSLHFVQ-GPNGVTHVKGKITGLKPGL-HGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            ++ G   V G++ F Q   +  T +   ITG       GFHIH  GD TNGC S GPHFNP  K HGAP+D  RH GDLGN+     G A+ S+ D  + L G HS++GR VV+HA  DDLGKG
Sbjct:    7 VLRGDAKVGGTVVFEQESESAPTTITWDITGNDANAKRGFHIHTFGDNTNGCTSAGPHFNPHGKTHGAPTDEARHVGDLGNLETDGQGNAKGSVKDEHVKLIGPHSVIGRTVVIHAGTDDLGKG 130          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_PBCV1 (Superoxide dismutase [Cu-Zn] OS=Paramecium bursaria Chlorella virus 1 GN=A245R PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.450e-26
Identity = 60/116 (51.72%), Postives = 75/116 (64.66%), Query Frame = 1
Query:  109 VKGSLHFVQGPNGVTHVKGKITGLKPGL-HGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            VKG++ FV+  + V  +   I+GLKP   HGFH+H  GD T+GC S   HFNP    HG P    RH GDLGNI+A  +G A+ S  D MI L G+ +I+GRA+VVHAD DDLG G
Sbjct:   45 VKGTVRFVEESSKVK-ISVDISGLKPNRKHGFHVHEAGDLTDGCTSACAHFNPFGTAHGGPDSKIRHVGDLGNILADKNGKAKYSFYDSMIKLRGKCNIIGRAIVVHADTDDLGLG 159          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_PODAN (Superoxide dismutase [Cu-Zn] OS=Podospora anserina GN=SOD1 PE=3 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 3.591e-25
Identity = 60/124 (48.39%), Postives = 73/124 (58.87%), Query Frame = 1
Query:   88 LISGATSVKGSLHFVQGP-NGVTHVKGKITGLKPGL-HGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            ++ G + V GS+ F Q   NG T +   ITG       G HIH  GD TNGC S GPHFNP  K HG  +D  RH GDLGNI     G ++ ++ D +I L G  S++GR VVVHA  DDLGKG
Sbjct:    7 VVRGDSKVSGSVVFEQETENGPTTITWDITGHDANAKRGMHIHTFGDNTNGCTSAGPHFNPHGKTHGNRTDENRHVGDLGNIETDAQGNSKGTVTDNLIKLIGPESVIGRTVVVHAGTDDLGKG 130          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_ASPOR (Superoxide dismutase [Cu-Zn] OS=Aspergillus oryzae GN=sodC PE=3 SV=3)

HSP 1 Score: 114.775 bits (286), Expect = 4.690e-25
Identity = 57/125 (45.60%), Postives = 73/125 (58.40%), Query Frame = 1
Query:   88 LISGATSVKGSLHFVQGP-NGVTHVKGKITGLKPGLH-GFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKGK 456
            ++ G + + G++ F Q   N  T V   ITG        FH+H  GD TNGC S GPHFNP  K+HGAP D  RH GDLGN     +G A  S  D++I L G  S+LGR +V+HA  DDLG+ +
Sbjct:    7 VLRGDSKISGTVTFEQADANAPTTVSWNITGHDANAERAFHVHQFGDNTNGCTSAGPHFNPFGKEHGAPEDENRHVGDLGNFKTDAEGNAVGSKQDKLIKLIGAESVLGRTLVIHAGTDDLGRSE 131          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_ASPFL (Superoxide dismutase [Cu-Zn] OS=Aspergillus flavus GN=sodC PE=3 SV=3)

HSP 1 Score: 114.775 bits (286), Expect = 4.690e-25
Identity = 57/124 (45.97%), Postives = 72/124 (58.06%), Query Frame = 1
Query:   91 ISGATSVKGSLHFVQGP-NGVTHVKGKITGLKPGLH-GFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKGK 456
            + G + + G++ F Q   N  T V   ITG        FH+H  GD TNGC S GPHFNP  K+HGAP D  RH GDLGN     +G A  S  D++I L G  S+LGR +V+HA  DDLG+ +
Sbjct:    7 VRGDSKISGTVTFEQADANAPTTVSWNITGHDANAERAFHVHQFGDNTNGCTSAGPHFNPFGKEHGAPEDENRHVGDLGNFKTDAEGNAVGSKQDKLIKLIGAESVLGRTLVIHAGTDDLGRSE 130          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: CCS_PIG (Copper chaperone for superoxide dismutase OS=Sus scrofa GN=CCS PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.000e-25
Identity = 57/147 (38.78%), Postives = 82/147 (55.78%), Query Frame = 1
Query:   13 EDPDRESKR*KMETGXXXXXXXXXXLISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            ED  R++    M +G          ++ G+  V+G + F+Q       ++G I GLKPGLHG H+H  GD T  CNS G HFNP    HG P D++RH GDLGN+ A  DG A   + D ++ +     ++GR++V+    DDLG+G
Sbjct:   67 EDTGRQAVLKGMGSGRWQNLEAAVAILGGSGPVQGVVRFLQLTPERCLIEGTIDGLKPGLHGLHVHQFGDLTRNCNSCGDHFNPDGMSHGGPQDSDRHRGDLGNVCADADGRAVFRMEDELLKV---WDVIGRSLVIDEGEDDLGRG 210          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_COLGL (Superoxide dismutase [Cu-Zn] OS=Colletotrichum gloeosporioides GN=SOD1 PE=3 SV=3)

HSP 1 Score: 113.235 bits (282), Expect = 1.365e-24
Identity = 56/124 (45.16%), Postives = 73/124 (58.87%), Query Frame = 1
Query:   88 LISGATSVKGSLHFVQ-GPNGVTHVKGKITGLKPGL-HGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            ++ G + V GS+ F Q   +  T +   I+G       G HIH  GD TNGC S GPHFNP  K HGAP D+ RH GDLGNI    +G ++ ++ D  + L G  S++GR +VVH   DDLGKG
Sbjct:    7 VVRGDSKVTGSIVFEQESESAPTKITWDISGNDANAKRGMHIHTFGDNTNGCTSAGPHFNPHNKTHGAPEDSNRHVGDLGNIETDANGNSKGTVTDSHVKLIGPESVIGRTIVVHGGTDDLGKG 130          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_NEUCR (Superoxide dismutase [Cu-Zn] OS=Neurospora crassa GN=sod-1 PE=1 SV=3)

HSP 1 Score: 110.923 bits (276), Expect = 6.773e-24
Identity = 57/124 (45.97%), Postives = 74/124 (59.68%), Query Frame = 1
Query:   88 LISGATSVKGSLHFVQ-GPNGVTHVKGKITGLKPGL-HGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            ++ G ++VKG++ F Q   +  T +   I+G  P    GFHIH  GD TNGC S GPHFNP    HG  +   RH GDLGNI     G A+ ++ D ++ L G  S++GR VVVHA  DDLGKG
Sbjct:    7 VVRGDSNVKGTVIFEQESESAPTTITYDISGNDPNAKRGFHIHTFGDNTNGCTSAGPHFNPHGTTHGDRTAEVRHVGDLGNIETDAQGNAKGTVTDNLVKLIGPESVIGRTVVVHAGTDDLGKG 130          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_BOTFU (Superoxide dismutase [Cu-Zn] OS=Botryotinia fuckeliana GN=sod1 PE=3 SV=3)

HSP 1 Score: 110.923 bits (276), Expect = 6.773e-24
Identity = 57/124 (45.97%), Postives = 71/124 (57.26%), Query Frame = 1
Query:   91 ISGATSVKGSLHFVQGP-NGVTHVKGKITGLKPGLH-GFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKGK 456
            + G + + G++ F Q   N  T +   ITG       G H+H  GD TNGC S GPHFNP  + HGAP+D  RH GDLGN      G A  S+ D  I L G  S++GR VVVH+  DDLGKG+
Sbjct:    8 VRGDSKISGTVTFEQSEENSPTTITWNITGNDANAERGMHVHQFGDNTNGCTSAGPHFNPHGQTHGAPTDEVRHVGDLGNFKTDAQGNATGSVQDSHIKLIGPLSVIGRTVVVHSGTDDLGKGE 131          
The following BLAST results are available for this feature:
BLAST of CX671688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
SODC4_DICDI1.458e-2651.61Superoxide dismutase [Cu-Zn] 4 OS=Dictyostelium di... [more]
SODC_CLAPU4.242e-2648.39Superoxide dismutase [Cu-Zn] OS=Claviceps purpurea... [more]
SODC_PBCV19.450e-2651.72Superoxide dismutase [Cu-Zn] OS=Paramecium bursari... [more]
SODC_PODAN3.591e-2548.39Superoxide dismutase [Cu-Zn] OS=Podospora anserina... [more]
SODC_ASPOR4.690e-2545.60Superoxide dismutase [Cu-Zn] OS=Aspergillus oryzae... [more]
SODC_ASPFL4.690e-2545.97Superoxide dismutase [Cu-Zn] OS=Aspergillus flavus... [more]
CCS_PIG8.000e-2538.78Copper chaperone for superoxide dismutase OS=Sus s... [more]
SODC_COLGL1.365e-2445.16Superoxide dismutase [Cu-Zn] OS=Colletotrichum glo... [more]
SODC_NEUCR6.773e-2445.97Superoxide dismutase [Cu-Zn] OS=Neurospora crassa ... [more]
SODC_BOTFU6.773e-2445.97Superoxide dismutase [Cu-Zn] OS=Botryotinia fuckel... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_12E09_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12E09-J18-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671688 ID=CX671688; Name=CX671688; organism=Citrus sinensis; type=EST; length=705bp
ATTTGATATCGAGAAGACCCAGATAGAGAAAGCAAGAGATAAAAAATGGA
AACAGGGGCTACAAAAGCCACAGTGAAAGCCGTGGCTCTCATTTCTGGTG
CTACCAGCGTTAAAGGCTCTCTTCACTTTGTTCAAGGACCCAACGGAGTT
ACACATGTGAAAGGGAAGATTACAGGACTGAAGCCAGGCCTTCATGGCTT
CCATATTCACGCCCTCGGTGACACCACTAATGGTTGCAATTCTACTGGAC
CTCATTTCAATCCATTGAAGAAGGATCATGGGGCTCCCAGTGATAACGAG
CGGCACACTGGTGATTTGGGAAACATTGTTGCAGGCCCTGATGGAGTTGC
TGAGGTTTCAATTGCTGACAGGATGATTCCTCTGAGCGGGCAACACTCAA
TATTGGGGAGGGCTGTTGTTGTGCACGCTGATCCTGATGATCTTGGAAAA
GGCAAGTTTAGTAGTTTGTCCTTAATTTTGATTACAAATCTTTTTTATTA
CAAGGATACAGCTTATTGGTACAAATGTACACAAAAGTATGTTTATTTTA
AACTGTCAGTTCTTTTGGAGAATAATATGTCAGGTTGAAGCTTTAGGTAA
GGATGTACAATTTTTTTTTCTTCCTCTTAGTTTCAGGTACATTGGATTCT
TTACAACTACTTTGAAGAGTTTAGTTTTAAATGTAAGAAATTCAGTGTAG
TTTGT
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