CX671688

Overview
NameCX671688
Unique NameCX671688
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_PAESI (Superoxide dismutase [Cu-Zn] OS=Paecilomyces sinensis GN=SOD1 PE=3 SV=3)

HSP 1 Score: 110.153 bits (274), Expect = 1.155e-23
Identity = 56/124 (45.16%), Postives = 75/124 (60.48%), Query Frame = 1
Query:   88 LISGATSVKGSLHFVQ-GPNGVTHVKGKITGLKPGL-HGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            ++ G + + G ++F Q   +  T +  +I+        GFHI   GD TNGC S GPHFNP  K HG  +D  RH GD+GNI    DG ++ SI D++I L G HS++GR VV+HA  DDLGKG
Sbjct:    7 VLRGDSKITGIVNFEQESDSSPTTISWEISNHDADAKRGFHITPFGDNTNGCTSAGPHFNPHGKTHGNVTDENRHVGDMGNIETDCDGNSKGSIKDKLIKLIGPHSVIGRTVVIHAGTDDLGKG 130          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: CCS_MOUSE (Copper chaperone for superoxide dismutase OS=Mus musculus GN=Ccs PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.155e-23
Identity = 51/122 (41.80%), Postives = 74/122 (60.66%), Query Frame = 1
Query:   88 LISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            ++ G  S++G + F+Q  + +  ++G I GL+PGLHG H+H  GD T  CNS G HFNP    HG P D +RH GDLGN+ A   G A   I D+ + +     ++GR++V+    DDLG+G
Sbjct:   92 ILEGCGSIQGVVRFLQLSSELCLIEGTIDGLEPGLHGLHVHQYGDLTRDCNSCGDHFNPDGASHGGPQDTDRHRGDLGNVRAEAGGRATFRIEDKQLKV---WDVIGRSLVIDEGEDDLGRG 210          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: CCS_HUMAN (Copper chaperone for superoxide dismutase OS=Homo sapiens GN=CCS PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.574e-23
Identity = 51/122 (41.80%), Postives = 74/122 (60.66%), Query Frame = 1
Query:   88 LISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            ++ G  +V+G + F+Q       ++G I GL+PGLHG H+H  GD TN CNS G HFNP    HG P D++RH GDLGN+ A  DG A   + D  + +     ++GR++++    DDLG+G
Sbjct:   92 ILGGPGTVQGVVRFLQLTPERCLIEGTIDGLEPGLHGLHVHQYGDLTNNCNSCGNHFNPDGASHGGPQDSDRHRGDLGNVRADADGRAIFRMEDEQLKV---WDVIGRSLIIDEGEDDLGRG 210          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: CCS_RAT (Copper chaperone for superoxide dismutase OS=Rattus norvegicus GN=Ccs PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.390e-23
Identity = 51/122 (41.80%), Postives = 75/122 (61.48%), Query Frame = 1
Query:   88 LISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            ++ G+ +V+G + F+Q  + +  ++G I GL+PGLHG H+H  GD T  C+S G HFNP    HG P D +RH GDLGN+ A   G A   I D+ + +     ++GR++VV    DDLG+G
Sbjct:   92 IMEGSGTVQGVVRFLQLSSELCLIEGTIDGLEPGLHGLHVHQYGDLTKDCSSCGDHFNPDGASHGGPQDTDRHRGDLGNVHAEASGRATFRIEDKQLKV---WDVIGRSLVVDEGEDDLGRG 210          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_SCHPO (Superoxide dismutase [Cu-Zn] OS=Schizosaccharomyces pombe GN=sod1 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.146e-21
Identity = 46/86 (53.49%), Postives = 57/86 (66.28%), Query Frame = 1
Query:  196 GFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            GFHIH  GD TNGC S GPHFNP  K HG  +   RH GDLGN+ +   G  + + +D +I L G +SI+GR +V+HA  DDLGKG
Sbjct:   45 GFHIHQFGDNTNGCTSAGPHFNPEGKTHGDRTAAVRHVGDLGNLESDAQGNIKTTFSDSVISLFGANSIIGRTIVIHAGEDDLGKG 130          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_LAMCR (Superoxide dismutase [Cu-Zn] (Fragment) OS=Lampanyctus crocodilus GN=sod1 PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.561e-20
Identity = 52/124 (41.94%), Postives = 71/124 (57.26%), Query Frame = 1
Query:   88 LISGATS-VKGSLHFVQGPNGV-THVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            ++ G T  V G+++F Q  +     + G+I GL PGLHGFH+HA GD TN               H  P+D +RH GDLGN       VA++ I D+M+ L+G  SI+GR +V+H   DDLGKG
Sbjct:    7 VLKGTTGEVTGTVYFEQESDSAPVKLTGQIIGLAPGLHGFHVHAFGDNTNXXXXXXXXXXXXXXTHAGPTDKDRHVGDLGN-------VAKIDITDKMLTLNGPLSIIGRTMVIHEKADDLGKG 123          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODE_SCHMA (Extracellular superoxide dismutase [Cu-Zn] OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.786e-16
Identity = 44/102 (43.14%), Postives = 56/102 (54.90%), Query Frame = 1
Query:  154 HVKGKITGLKPG-LHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKGK 456
            +V G + GL PG L G H+H  G   N C   GPHFNP  + HG      RH GDLGNI  G  GVA+      +  L      +GRA+V+HA+ DDLG+ +
Sbjct:   59 YVNGSVAGLPPGKLLGTHVHRYGGLGNMCLEAGPHFNPFNQRHGPRHGYPRHAGDLGNIRVGRGGVAKFDFYVTIKGLGPFDGFIGRALVIHANRDDLGRNR 160          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODE_RAT (Extracellular superoxide dismutase [Cu-Zn] OS=Rattus norvegicus GN=Sod3 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.580e-15
Identity = 45/87 (51.72%), Postives = 51/87 (58.62%), Query Frame = 1
Query:  193 HGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            H  H+H  GD + GC STGPH+NPL    G P  + +H GD GN V   DG            L+G HSILGRAVVVHA  DDLGKG
Sbjct:  118 HAIHVHEFGDLSQGCESTGPHYNPL----GVP--HPQHPGDFGNFVV-RDGRLWKHRMGLATSLAGPHSILGRAVVVHAGEDDLGKG 197          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODE_HUMAN (Extracellular superoxide dismutase [Cu-Zn] OS=Homo sapiens GN=SOD3 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 6.354e-14
Identity = 42/84 (50.00%), Postives = 49/84 (58.33%), Query Frame = 1
Query:  202 HIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            H+H  GD + GC STGPH+NPL   H       +H GD GN  A  DG      A     L+G HSI+GRAVVVHA  DDLG+G
Sbjct:  114 HVHQFGDLSQGCESTGPHYNPLAVPH------PQHPGDFGNF-AVRDGSLWRYRAGLAASLAGPHSIVGRAVVVHAGEDDLGRG 190          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODE_MOUSE (Extracellular superoxide dismutase [Cu-Zn] OS=Mus musculus GN=Sod3 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.849e-13
Identity = 39/84 (46.43%), Postives = 50/84 (59.52%), Query Frame = 1
Query:  202 HIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            H+H  GD + GC+STGPH+NP++  H       +H GD GN V   +G            L+G H+ILGR+VVVHA  DDLGKG
Sbjct:  128 HVHEFGDLSQGCDSTGPHYNPMEVPH------PQHPGDFGNFVV-RNGQLWRHRVGLTASLAGPHAILGRSVVVHAGEDDLGKG 204          
The following BLAST results are available for this feature:
BLAST of CX671688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
SODC_PAESI1.155e-2345.16Superoxide dismutase [Cu-Zn] OS=Paecilomyces sinen... [more]
CCS_MOUSE1.155e-2341.80Copper chaperone for superoxide dismutase OS=Mus m... [more]
CCS_HUMAN2.574e-2341.80Copper chaperone for superoxide dismutase OS=Homo ... [more]
CCS_RAT4.390e-2341.80Copper chaperone for superoxide dismutase OS=Rattu... [more]
SODC_SCHPO3.146e-2153.49Superoxide dismutase [Cu-Zn] OS=Schizosaccharomyce... [more]
SODC_LAMCR1.561e-2041.94Superoxide dismutase [Cu-Zn] (Fragment) OS=Lampany... [more]
SODE_SCHMA1.786e-1643.14Extracellular superoxide dismutase [Cu-Zn] OS=Schi... [more]
SODE_RAT2.580e-1551.72Extracellular superoxide dismutase [Cu-Zn] OS=Ratt... [more]
SODE_HUMAN6.354e-1450.00Extracellular superoxide dismutase [Cu-Zn] OS=Homo... [more]
SODE_MOUSE1.849e-1346.43Extracellular superoxide dismutase [Cu-Zn] OS=Mus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_12E09_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12E09-J18-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671688 ID=CX671688; Name=CX671688; organism=Citrus sinensis; type=EST; length=705bp
ATTTGATATCGAGAAGACCCAGATAGAGAAAGCAAGAGATAAAAAATGGA
AACAGGGGCTACAAAAGCCACAGTGAAAGCCGTGGCTCTCATTTCTGGTG
CTACCAGCGTTAAAGGCTCTCTTCACTTTGTTCAAGGACCCAACGGAGTT
ACACATGTGAAAGGGAAGATTACAGGACTGAAGCCAGGCCTTCATGGCTT
CCATATTCACGCCCTCGGTGACACCACTAATGGTTGCAATTCTACTGGAC
CTCATTTCAATCCATTGAAGAAGGATCATGGGGCTCCCAGTGATAACGAG
CGGCACACTGGTGATTTGGGAAACATTGTTGCAGGCCCTGATGGAGTTGC
TGAGGTTTCAATTGCTGACAGGATGATTCCTCTGAGCGGGCAACACTCAA
TATTGGGGAGGGCTGTTGTTGTGCACGCTGATCCTGATGATCTTGGAAAA
GGCAAGTTTAGTAGTTTGTCCTTAATTTTGATTACAAATCTTTTTTATTA
CAAGGATACAGCTTATTGGTACAAATGTACACAAAAGTATGTTTATTTTA
AACTGTCAGTTCTTTTGGAGAATAATATGTCAGGTTGAAGCTTTAGGTAA
GGATGTACAATTTTTTTTTCTTCCTCTTAGTTTCAGGTACATTGGATTCT
TTACAACTACTTTGAAGAGTTTAGTTTTAAATGTAAGAAATTCAGTGTAG
TTTGT
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