CX671688

Overview
NameCX671688
Unique NameCX671688
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_CANFA (Superoxide dismutase [Cu-Zn] OS=Canis familiaris GN=SOD1 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 6.976e-37
Identity = 72/122 (59.02%), Postives = 84/122 (68.85%), Query Frame = 1
Query:   88 LISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            ++ G   V+G++HFVQ  +G   V G ITGL  G HGFH+H   D T GC S GPHFNPL K HG P D ERH GDLGN+ AG DGVA VSI D +I LSG +SI+GR +VVH   DDLGKG
Sbjct:    8 VLKGQGPVEGTIHFVQKGSGPVVVSGTITGLTEGEHGFHVHQFEDXTQGCTSAGPHFNPLSKKHGGPKDQERHVGDLGNVTAGKDGVAIVSIEDSLIALSGDYSIIGRTMVVHEKRDDLGKG 129          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_ASPJA (Superoxide dismutase [Cu-Zn] (Fragment) OS=Aspergillus japonicus GN=sodC PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 6.976e-37
Identity = 68/88 (77.27%), Postives = 75/88 (85.23%), Query Frame = 1
Query:  190 LHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            LHGFH+HALGDTTNGC STGPHFNP  K+HGAP D  RH GDLGNI AG DGVA V+++D  IPL+G HSI+GRAVVVHADPDDLGKG
Sbjct:    7 LHGFHVHALGDTTNGCMSTGPHFNPTGKEHGAPQDENRHAGDLGNITAGADGVANVNVSDSQIPLTGAHSIIGRAVVVHADPDDLGKG 94          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODCP_SOLLC (Superoxide dismutase [Cu-Zn], chloroplastic OS=Solanum lycopersicum GN=SODCP.2 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 6.976e-37
Identity = 73/122 (59.84%), Postives = 89/122 (72.95%), Query Frame = 1
Query:   88 LISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            ++ G ++V+G +   Q  +G T V  +ITGL PGLHGFH+H  GDTTNGC STG HFNP K  HGAP D  RH GDLGNIVA  DGVAEV++ D  IPL+G +S++GRA+VVH   DDLGKG
Sbjct:   71 VLKGNSNVEGVVTLSQDDDGPTTVNVRITGLAPGLHGFHLHEYGDTTNGCMSTGAHFNPNKLTHGAPGDEIRHAGDLGNIVANADGVAEVTLVDNQIPLTGPNSVVGRALVVHELEDDLGKG 192          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODCP_SOLCS (Superoxide dismutase [Cu-Zn], chloroplastic OS=Solidago canadensis var. scabra GN=SODCP PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 6.976e-37
Identity = 72/122 (59.02%), Postives = 86/122 (70.49%), Query Frame = 1
Query:   88 LISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            ++ G +SV+G +   Q  +G T V  KITGL PG HGFH+H  GDTTNGC STGPHFNP    HGAP D  RH GDLGNI+A  DGVAE +I D  IPL+G ++++GRA VVH   DDLGKG
Sbjct:   74 VLKGTSSVEGVVTLTQEEDGPTTVNVKITGLTPGPHGFHLHEFGDTTNGCISTGPHFNPNGNTHGAPEDENRHAGDLGNIIANADGVAEATIVDNQIPLTGPNAVVGRAFVVHELADDLGKG 195          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_HYLLA (Superoxide dismutase [Cu-Zn] OS=Hylobates lar GN=SOD1 PE=2 SV=3)

HSP 1 Score: 153.68 bits (387), Expect = 9.111e-37
Identity = 72/123 (58.54%), Postives = 86/123 (69.92%), Query Frame = 1
Query:   88 LISGATSVKGSLHFVQGP-NGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            ++ G + V+G ++F Q   NG   V G+ITGL  GLHGFH+H  GD T GC S GPHFNPL + HG P D ERH GDLGN+ A  DGVA+VSI D +I LSG HSI+GR +VVH   DDLGKG
Sbjct:    8 VLKGDSPVQGIINFEQKESNGPVKVYGRITGLTEGLHGFHVHQFGDNTQGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVAKVSIEDSVISLSGDHSIIGRTLVVHEKADDLGKG 130          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODCP_PETHY (Superoxide dismutase [Cu-Zn], chloroplastic OS=Petunia hybrida GN=SODCP PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 9.111e-37
Identity = 72/122 (59.02%), Postives = 87/122 (71.31%), Query Frame = 1
Query:   88 LISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            ++ G ++V+G +   Q  +G T VK +ITGL PGLHGFH+H  GDTTNGC STGPHFNP    HGAP D  RH GDLGNI A   GVAE ++ D  IPLSG +S++GRA+VVH   DDLGKG
Sbjct:   73 VLKGTSNVEGVVTLTQDDDGPTTVKVRITGLAPGLHGFHLHEFGDTTNGCMSTGPHFNPNGLTHGAPGDEVRHAGDLGNIEANASGVAEATLVDNQIPLSGPNSVVGRALVVHELEDDLGKG 194          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_RAT (Superoxide dismutase [Cu-Zn] OS=Rattus norvegicus GN=Sod1 PE=1 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 1.554e-36
Identity = 72/123 (58.54%), Postives = 86/123 (69.92%), Query Frame = 1
Query:   88 LISGATSVKGSLHFVQGPNGV-THVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            ++ G   V+G +HF Q  +G    V G+ITGL  G HGFH+H  GD T GC + GPHFNP  K HG P+D ERH GDLGN+ AG DGVA VSI DR+I LSG+HSI+GR +VVH   DDLGKG
Sbjct:    8 VLKGDGPVQGVIHFEQKASGEPVVVSGQITGLTEGEHGFHVHQYGDNTQGCTTAGPHFNPHSKKHGGPADEERHVGDLGNVAAGKDGVANVSIEDRVISLSGEHSIIGRTMVVHEKQDDLGKG 130          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_PRIGL (Superoxide dismutase [Cu-Zn] OS=Prionace glauca GN=sod1 PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.554e-36
Identity = 69/122 (56.56%), Postives = 84/122 (68.85%), Query Frame = 1
Query:   88 LISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            ++ G   V G++ F Q  +G   +KG ITGL PG HGFH+HA GD TNGC S GPH+NP  K+HG P D ERH GDLGN+ A  +GVAE  I DR + LSG+ SI+GR +VVH   DDLGKG
Sbjct:    6 VLKGTGEVTGTVLFEQAADGPVTLKGSITGLTPGKHGFHVHAFGDNTNGCISAGPHYNPFSKNHGGPDDEERHVGDLGNVEANGNGVAEFEIKDRQLHLSGERSIIGRTLVVHEKEDDLGKG 127          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODCP_ZANAE (Superoxide dismutase [Cu-Zn], chloroplastic OS=Zantedeschia aethiopica GN=SODCP PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.462e-36
Identity = 74/122 (60.66%), Postives = 86/122 (70.49%), Query Frame = 1
Query:   88 LISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            ++ G + V G +  VQ  +G T V  +ITGL PGLHGFH+H  GDTTNGC STG HFNP K  HGAP D  RH GDLGNIVA  DG+AE +I D  IPLSG +S++GRA VVH   DDLGKG
Sbjct:   70 VLKGTSQVDGVVTLVQEDDGPTTVNVRITGLTPGLHGFHLHEYGDTTNGCISTGSHFNPNKLTHGAPMDVVRHAGDLGNIVANVDGLAEATIVDDQIPLSGSNSVVGRAFVVHELEDDLGKG 191          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_BRUPA (Superoxide dismutase [Cu-Zn] OS=Brugia pahangi GN=SODC PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.906e-36
Identity = 70/117 (59.83%), Postives = 84/117 (71.79%), Query Frame = 1
Query:  106 SVKGSLHFVQGPNGV-THVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            +V G + F Q   G  T + G+I GL PGLHGFH+H  GDTTNGC S GPHFNP  K HG P+D  RH GDLGNIVAG DG A + I+D+ + L G +SI+GR++VVHAD DDLGKG
Sbjct:   13 NVSGIIRFKQEKEGSPTTISGEIKGLTPGLHGFHVHQYGDTTNGCISAGPHFNPYNKTHGGPTDEMRHVGDLGNIVAGADGTAHIDISDKHVQLLGPNSIIGRSLVVHADQDDLGKG 129          
The following BLAST results are available for this feature:
BLAST of CX671688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
SODC_CANFA6.976e-3759.02Superoxide dismutase [Cu-Zn] OS=Canis familiaris G... [more]
SODC_ASPJA6.976e-3777.27Superoxide dismutase [Cu-Zn] (Fragment) OS=Aspergi... [more]
SODCP_SOLLC6.976e-3759.84Superoxide dismutase [Cu-Zn], chloroplastic OS=Sol... [more]
SODCP_SOLCS6.976e-3759.02Superoxide dismutase [Cu-Zn], chloroplastic OS=Sol... [more]
SODC_HYLLA9.111e-3758.54Superoxide dismutase [Cu-Zn] OS=Hylobates lar GN=S... [more]
SODCP_PETHY9.111e-3759.02Superoxide dismutase [Cu-Zn], chloroplastic OS=Pet... [more]
SODC_RAT1.554e-3658.54Superoxide dismutase [Cu-Zn] OS=Rattus norvegicus ... [more]
SODC_PRIGL1.554e-3656.56Superoxide dismutase [Cu-Zn] OS=Prionace glauca GN... [more]
SODCP_ZANAE3.462e-3660.66Superoxide dismutase [Cu-Zn], chloroplastic OS=Zan... [more]
SODC_BRUPA5.906e-3659.83Superoxide dismutase [Cu-Zn] OS=Brugia pahangi GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_12E09_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12E09-J18-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671688 ID=CX671688; Name=CX671688; organism=Citrus sinensis; type=EST; length=705bp
ATTTGATATCGAGAAGACCCAGATAGAGAAAGCAAGAGATAAAAAATGGA
AACAGGGGCTACAAAAGCCACAGTGAAAGCCGTGGCTCTCATTTCTGGTG
CTACCAGCGTTAAAGGCTCTCTTCACTTTGTTCAAGGACCCAACGGAGTT
ACACATGTGAAAGGGAAGATTACAGGACTGAAGCCAGGCCTTCATGGCTT
CCATATTCACGCCCTCGGTGACACCACTAATGGTTGCAATTCTACTGGAC
CTCATTTCAATCCATTGAAGAAGGATCATGGGGCTCCCAGTGATAACGAG
CGGCACACTGGTGATTTGGGAAACATTGTTGCAGGCCCTGATGGAGTTGC
TGAGGTTTCAATTGCTGACAGGATGATTCCTCTGAGCGGGCAACACTCAA
TATTGGGGAGGGCTGTTGTTGTGCACGCTGATCCTGATGATCTTGGAAAA
GGCAAGTTTAGTAGTTTGTCCTTAATTTTGATTACAAATCTTTTTTATTA
CAAGGATACAGCTTATTGGTACAAATGTACACAAAAGTATGTTTATTTTA
AACTGTCAGTTCTTTTGGAGAATAATATGTCAGGTTGAAGCTTTAGGTAA
GGATGTACAATTTTTTTTTCTTCCTCTTAGTTTCAGGTACATTGGATTCT
TTACAACTACTTTGAAGAGTTTAGTTTTAAATGTAAGAAATTCAGTGTAG
TTTGT
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