CX671688

Overview
NameCX671688
Unique NameCX671688
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_ASHGO (Superoxide dismutase [Cu-Zn] OS=Ashbya gossypii GN=SOD1 PE=3 SV=3)

HSP 1 Score: 132.494 bits (332), Expect = 2.174e-30
Identity = 65/124 (52.42%), Postives = 80/124 (64.52%), Query Frame = 1
Query:   88 LISGATSVKGSLHFVQGPNG-VTHVKGKITGLKPGL-HGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            ++ G   V G +HF Q  +  VT +   ITG +P   HGFHIH  GD TNGC S+G HFNP KK HG+P D  RH GD+GN++A  +GVA  S  D +I + G  SILGR VVVHA  DDLG+G
Sbjct:    7 VLKGDAGVSGVVHFEQEADAAVTTISWNITGFEPNTEHGFHIHEFGDVTNGCTSSGSHFNPFKKTHGSPEDENRHVGDMGNVLADANGVAVGSAKDPLIKIFGPTSILGRTVVVHAGKDDLGRG 130          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_CANAL (Superoxide dismutase [Cu-Zn] OS=Candida albicans GN=SOD1 PE=3 SV=3)

HSP 1 Score: 131.339 bits (329), Expect = 4.842e-30
Identity = 66/126 (52.38%), Postives = 82/126 (65.08%), Query Frame = 1
Query:   88 LISGATSVKGSLHFVQ-GPNGVTHVKGKITGLKPG-LHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKGKF 459
            ++ G + V+G++HF Q   +  T +  +I G  P  L GFHIH  GD TNGC S GPHFNP  K HGAP D+ERH GDLGNI    +GVA+ +  D +I L G+ SILGR +VVHA  DD GKG F
Sbjct:    7 VVRGDSKVQGTVHFEQESESAPTTISWEIEGNDPNALRGFHIHQFGDNTNGCTSAGPHFNPFGKQHGAPEDDERHVGDLGNISTDGNGVAKGTKQDLLIKLIGKDSILGRTIVVHAGTDDYGKGGF 132          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_DROER (Superoxide dismutase [Cu-Zn] OS=Drosophila erecta GN=Sod PE=3 SV=3)

HSP 1 Score: 130.954 bits (328), Expect = 6.324e-30
Identity = 66/115 (57.39%), Postives = 76/115 (66.09%), Query Frame = 1
Query:  112 KGSLHFVQGPNGV-THVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            KG++ F Q  +     V G++ GL   LHGFH+H  GD TNGC S+GPHFNP  K+HGAP D  RH GDLGNI A  D   +VSI D  I L G  SI+GR VVVHAD DDLGKG
Sbjct:   14 KGTVFFEQESSETPVKVSGEVCGLAKCLHGFHVHEFGDNTNGCMSSGPHFNPHGKEHGAPVDENRHLGDLGNIEATGDCPTKVSITDSKITLFGADSIIGRTVVVHADADDLGKG 128          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODE_DIRIM (Extracellular superoxide dismutase [Cu-Zn] OS=Dirofilaria immitis PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 8.260e-30
Identity = 63/117 (53.85%), Postives = 78/117 (66.67%), Query Frame = 1
Query:  106 SVKGSLHFVQGPNG-VTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            +V G ++F Q      T + G I GL PGLHGFHIH  G   NGC S   H+NP +K HG P++N +H GDL NI AG DGVA V+I    I LSG  S++GR++VVHA+PDDLGKG
Sbjct:   50 TVNGIIYFQQNNRASATTIYGTINGLTPGLHGFHIHQYGIKANGCTSAAAHYNPFEKTHGRPTNNIKHIGDLRNIKAGADGVANVNIISNHIQLSGPLSVIGRSLVVHANPDDLGKG 166          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_XIPGL (Superoxide dismutase [Cu-Zn] OS=Xiphias gladius GN=sod1 PE=1 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 8.260e-30
Identity = 62/123 (50.41%), Postives = 80/123 (65.04%), Query Frame = 1
Query:   88 LISGATSVKGSLHFVQGPNGVTHVKGKIT-GLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            ++ GA    G+++F Q  N     KG I  GL PG HGFH+H  GD TNGC S GPHFNP  K H  P D +RH GDLGN+ A  +GVA++ I D+ I L+G +SI+GR +V+H   DDLG+G
Sbjct:    8 VLRGAGETTGTVYFEQEGNANAVGKGIILKGLTPGEHGFHVHGFGDNTNGCISAGPHFNPASKKHAGPKDEDRHVGDLGNVTADANGVAKIDITDK-ISLTGPYSIIGRTMVIHEKADDLGRG 129          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_BOMMO (Superoxide dismutase [Cu-Zn] OS=Bombyx mori PE=1 SV=3)

HSP 1 Score: 129.413 bits (324), Expect = 1.840e-29
Identity = 66/117 (56.41%), Postives = 76/117 (64.96%), Query Frame = 1
Query:  109 VKGSLHF-VQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPD-GVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            V G++ F  Q       V G++ GL  G HGFH+H  GD TNGC S G HFNP K+DHG PS   RH GDLGNI A  D GV +VSI D  I L G +SI+GR +VVHADPDDLG G
Sbjct:   13 VSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVHADPDDLGLG 129          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODE_HAECO (Extracellular superoxide dismutase [Cu-Zn] OS=Haemonchus contortus GN=SOD PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.403e-29
Identity = 56/99 (56.57%), Postives = 72/99 (72.73%), Query Frame = 1
Query:  157 VKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            + G ++GL+PGLHGFHIH  GD  NGC + G HFNP K  HGAP D+ RH GDLGNI     G   + I+D +I L+GQH+++GRA+V+HAD DDLG+G
Sbjct:   62 MNGSVSGLQPGLHGFHIHEKGDLGNGCLAAGAHFNPHKMMHGAPEDSNRHVGDLGNIETPKTGDTPILISDSVISLTGQHNVIGRAIVIHADMDDLGRG 160          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_KLULA (Superoxide dismutase [Cu-Zn] OS=Kluyveromyces lactis GN=SOD1 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.099e-29
Identity = 65/124 (52.42%), Postives = 79/124 (63.71%), Query Frame = 1
Query:   88 LISGATSVKGSLHFVQ-GPNGVTHVKGKITGLKPG-LHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            ++ G +SV G + F Q   +  T +  +ITG     L GFHIH  GD TNGC S GPHFNP  K+HGAP D ERH GDLGNI     G+++ S+ D+ I L G  SI+GR VVVHA  DDLGKG
Sbjct:    7 VLKGDSSVSGIVRFEQESEDQQTKISWEITGNDANALRGFHIHTFGDNTNGCTSAGPHFNPFNKNHGAPEDEERHVGDLGNIPTDAQGISKGSLTDKHIKLLGPLSIVGRTVVVHAGQDDLGKG 130          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC_CRYGA (Superoxide dismutase [Cu-Zn] OS=Cryptococcus gattii GN=SOD1 PE=2 SV=3)

HSP 1 Score: 128.257 bits (321), Expect = 4.099e-29
Identity = 63/124 (50.81%), Postives = 79/124 (63.71%), Query Frame = 1
Query:   88 LISGATSVKGSLHFVQGPNGV-THVKGKITGLKPGLH-GFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKG 453
            ++ G + V G + F Q   G    V G I  L      GFH+H  GD TNGC S GPHFNP  K+HGAPSD+ERH GDLGN+    +GVA V+I+D+ + L G +SI+GR +VVHA  DD GKG
Sbjct:    7 VLKGDSPVTGVITFTQEKEGAPVTVSGDIKNLDANAERGFHVHEFGDNTNGCTSAGPHFNPHGKNHGAPSDSERHVGDLGNVKTDGNGVASVNISDKSLSLFGPYSIIGRTIVVHAGTDDFGKG 130          
BLAST of CX671688 vs. ExPASy Swiss-Prot
Match: SODC6_DICDI (Probable superoxide dismutase [Cu-Zn] 6 OS=Dictyostelium discoideum GN=sodF PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.132e-29
Identity = 54/102 (52.94%), Postives = 74/102 (72.55%), Query Frame = 1
Query:  154 HVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKGKF 459
            ++ G ++GL PG HG H+H  GDT+NGC S G H+NPL ++HG+P D ERH GDLGNI A  +GVA +SI D ++ L G  S++GR +V+H+D DD G+G F
Sbjct:   29 YINGTVSGLTPGQHGMHVHEFGDTSNGCISAGDHYNPLHREHGSPLDVERHIGDLGNIKALSNGVATISIRDTIMSLFGDISVMGRTMVIHSDRDDYGRGNF 130          
The following BLAST results are available for this feature:
BLAST of CX671688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
SODC_ASHGO2.174e-3052.42Superoxide dismutase [Cu-Zn] OS=Ashbya gossypii GN... [more]
SODC_CANAL4.842e-3052.38Superoxide dismutase [Cu-Zn] OS=Candida albicans G... [more]
SODC_DROER6.324e-3057.39Superoxide dismutase [Cu-Zn] OS=Drosophila erecta ... [more]
SODE_DIRIM8.260e-3053.85Extracellular superoxide dismutase [Cu-Zn] OS=Diro... [more]
SODC_XIPGL8.260e-3050.41Superoxide dismutase [Cu-Zn] OS=Xiphias gladius GN... [more]
SODC_BOMMO1.840e-2956.41Superoxide dismutase [Cu-Zn] OS=Bombyx mori PE=1 S... [more]
SODE_HAECO2.403e-2956.57Extracellular superoxide dismutase [Cu-Zn] OS=Haem... [more]
SODC_KLULA4.099e-2952.42Superoxide dismutase [Cu-Zn] OS=Kluyveromyces lact... [more]
SODC_CRYGA4.099e-2950.81Superoxide dismutase [Cu-Zn] OS=Cryptococcus gatti... [more]
SODC6_DICDI9.132e-2952.94Probable superoxide dismutase [Cu-Zn] 6 OS=Dictyos... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS10_12E09_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12E09-J18-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671688 ID=CX671688; Name=CX671688; organism=Citrus sinensis; type=EST; length=705bp
ATTTGATATCGAGAAGACCCAGATAGAGAAAGCAAGAGATAAAAAATGGA
AACAGGGGCTACAAAAGCCACAGTGAAAGCCGTGGCTCTCATTTCTGGTG
CTACCAGCGTTAAAGGCTCTCTTCACTTTGTTCAAGGACCCAACGGAGTT
ACACATGTGAAAGGGAAGATTACAGGACTGAAGCCAGGCCTTCATGGCTT
CCATATTCACGCCCTCGGTGACACCACTAATGGTTGCAATTCTACTGGAC
CTCATTTCAATCCATTGAAGAAGGATCATGGGGCTCCCAGTGATAACGAG
CGGCACACTGGTGATTTGGGAAACATTGTTGCAGGCCCTGATGGAGTTGC
TGAGGTTTCAATTGCTGACAGGATGATTCCTCTGAGCGGGCAACACTCAA
TATTGGGGAGGGCTGTTGTTGTGCACGCTGATCCTGATGATCTTGGAAAA
GGCAAGTTTAGTAGTTTGTCCTTAATTTTGATTACAAATCTTTTTTATTA
CAAGGATACAGCTTATTGGTACAAATGTACACAAAAGTATGTTTATTTTA
AACTGTCAGTTCTTTTGGAGAATAATATGTCAGGTTGAAGCTTTAGGTAA
GGATGTACAATTTTTTTTTCTTCCTCTTAGTTTCAGGTACATTGGATTCT
TTACAACTACTTTGAAGAGTTTAGTTTTAAATGTAAGAAATTCAGTGTAG
TTTGT
back to top