CX671682

Overview
NameCX671682
Unique NameCX671682
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length698
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX671682 vs. ExPASy Swiss-Prot
Match: RS9_CHLTB (30S ribosomal protein S9 OS=Chlamydia trachomatis (strain L2b/UCH-1/proctitis) GN=rpsI PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.376e-11
Identity = 49/134 (36.57%), Postives = 69/134 (51.49%), Query Frame = 1 
Query:   94 GRKKTAVAVTYCKRGRGLIKINGCPIELVEP-EILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 492
            GR+K AV+    + G G I +NG  +E   P E+ R     P+ +LG    N  D+ IRV GGG   Q+ A R  +A+A++         Q K++IK  L    +  L  DPR+ E KK+G + AR  FQ S R
Sbjct:    9 GRRKQAVSSVRLRSGNGKIDVNGKTLEQYFPLEVQRATILAPLRMLGD--VNSFDLIIRVSGGGVQGQVIATRLGLARAVL---------QEKEDIKQELKA--QGFLTRDPRKKERKKYGRKKARKSFQFSKR 129
[Close]
BLAST of CX671682 vs. ExPASy Swiss-Prot
Match: RS9_CHLT2 (30S ribosomal protein S9 OS=Chlamydia trachomatis (strain L2/434/Bu / ATCC VR-902B) GN=rpsI PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.376e-11
Identity = 49/134 (36.57%), Postives = 69/134 (51.49%), Query Frame = 1 
Query:   94 GRKKTAVAVTYCKRGRGLIKINGCPIELVEP-EILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 492
            GR+K AV+    + G G I +NG  +E   P E+ R     P+ +LG    N  D+ IRV GGG   Q+ A R  +A+A++         Q K++IK  L    +  L  DPR+ E KK+G + AR  FQ S R
Sbjct:    9 GRRKQAVSSVRLRSGNGKIDVNGKTLEQYFPLEVQRATILAPLRMLGD--VNSFDLIIRVSGGGVQGQVIATRLGLARAVL---------QEKEDIKQELKA--QGFLTRDPRKKERKKYGRKKARKSFQFSKR 129
The following BLAST results are available for this feature:
BLAST of CX671682 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
RS9_CHLTB8.376e-1136.5730S ribosomal protein S9 OS=Chlamydia trachomatis ... [more]
RS9_CHLT28.376e-1136.5730S ribosomal protein S9 OS=Chlamydia trachomatis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_12E05_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12E05-J10-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671682 ID=CX671682; Name=CX671682; organism=Citrus sinensis; type=EST; length=698bp
AAGCACCAAGGGCTCACACAACACAAACACACACTAAGCACTGATCCCAA
CATGGCTACTGCTGCTCCTAAAACCGAGTCCGTGCAATGCTTCGGCCGCA
AGAAGACGGCGGTGGCAGTAACCTACTGCAAGCGCGGCCGCGGCTTGATC
AAGATCAACGGCTGCCCAATCGAGCTTGTGGAGCCAGAGATCCTGCGTTT
CAAGGCCTTCGAGCCGATCCTATTGCTCGGACGACACCGTTTCAACGGAG
TAGACATGAGGATCCGCGTCAAGGGCGGAGGCCACACATCTCAGATCTAC
GCTATACGCCAGAGCATCGCCAAGGCCTTGGTCGCGTTTTATCAGAAGTA
CGTGGACGAACAGAGCAAGAAGGAGATAAAAGACATTCTGGTTAGGTACG
ATAGGACTTTGCTTGTGGCTGATCCTAGACGCTGTGAGCCTAAGAAGTTC
GGAGGACGCGGCGCCAGGGCTAGGTTCCAGAAATCTTACCGTTGAAGAAA
CAGAGGTTTATGTTGCGTTTTTATTATTGTTATTAATTTTGGGTTTTATT
GAAGGATTAATTAATATGTTTTTGAGGCCACATAGATTTTGAATGGTTAT
TGTTATTGTTAAGGGTATTGTGGTTTTCAGATTATCATATGGATTTTATA
TTTGCTTTTGAATGAAGAAGTGATTTCTGTTTAAAAAAAAAAAAAAAA
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