CX671678

Overview
NameCX671678
Unique NameCX671678
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671678 vs. ExPASy Swiss-Prot
Match: NCBP1_DROMO (Nuclear cap-binding protein subunit 1 OS=Drosophila mojavensis GN=Cbp80 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.614e-15
Identity = 51/201 (25.37%), Postives = 100/201 (49.75%), Query Frame = 1
Query:  127 KNLLLKIGDNCPEYGNSDDLKDHIETCFGVIRRELEHSFDDVPHYIINCAEQIPHKIPLYGTLVGLLNLENEDFVKKVVETTQRKFQDALDSGNCDRIRILMRFLTVMMCSKILQPGSLVVVFETLLSSAATTVDEDKGNPSWQARADFYVTCILSCLPWGGAELIEQVPEEIERVMAGLEAYLSIRRHTSDTGLSFFEED 729
            ++L+L++G+      ++  ++ ++E    V+  +L      +   + +CA ++P K  +Y TLVGLLN +N  F  + V+   + F+++L     D  R  +RFL  ++   ++   SL+ + +T+       +D    +   Q R D++V  +LS LPW G +L E+    +E ++  +E YL+ R       L  +  D
Sbjct:   35 ESLILRVGER-----STSSVESNLEGLVSVLEADLGTFRLKILRILSDCAVRMPEKCTVYTTLVGLLNAKNYKFGGEFVDHMVKTFKESLKLCRWDAARYSLRFLADLVNCHVISATSLLQLLDTM-------IDVSNEDTVPQVRRDWFVFAVLSTLPWVGRDLYEKKESALESLLLRIEVYLNKRSKKHHNALRVWSSD 223          
BLAST of CX671678 vs. ExPASy Swiss-Prot
Match: NCBP1_DROGR (Nuclear cap-binding protein subunit 1 OS=Drosophila grimshawi GN=Cbp80 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.614e-15
Identity = 51/201 (25.37%), Postives = 100/201 (49.75%), Query Frame = 1
Query:  127 KNLLLKIGDNCPEYGNSDDLKDHIETCFGVIRRELEHSFDDVPHYIINCAEQIPHKIPLYGTLVGLLNLENEDFVKKVVETTQRKFQDALDSGNCDRIRILMRFLTVMMCSKILQPGSLVVVFETLLSSAATTVDEDKGNPSWQARADFYVTCILSCLPWGGAELIEQVPEEIERVMAGLEAYLSIRRHTSDTGLSFFEED 729
            ++L+L++G+      ++  ++ ++E    V+  +L      +   + +CA ++P K  +Y TLVGLLN +N  F  + V+   + F+++L     D  R  +RFL  ++   ++   SL+ + +T+       +D    +   Q R D++V  +LS LPW G +L E+    +E ++  +E YL+ R       L  +  D
Sbjct:   35 ESLILRVGER-----STSSVESNLEGLVSVLEADLGTFRLKILRILSDCAVRMPEKCTVYTTLVGLLNAKNYKFGGEFVDHMVKTFKESLKLCRWDAARYSLRFLADLVNCHVISATSLLQLLDTM-------IDVSNEDTVPQVRRDWFVFAVLSTLPWVGRDLYEKKESSLESLLLRIEVYLNKRSKKHHNALRVWTSD 223          
BLAST of CX671678 vs. ExPASy Swiss-Prot
Match: NCBP1_DROAN (Nuclear cap-binding protein subunit 1 OS=Drosophila ananassae GN=Cbp80 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.614e-15
Identity = 51/201 (25.37%), Postives = 100/201 (49.75%), Query Frame = 1
Query:  127 KNLLLKIGDNCPEYGNSDDLKDHIETCFGVIRRELEHSFDDVPHYIINCAEQIPHKIPLYGTLVGLLNLENEDFVKKVVETTQRKFQDALDSGNCDRIRILMRFLTVMMCSKILQPGSLVVVFETLLSSAATTVDEDKGNPSWQARADFYVTCILSCLPWGGAELIEQVPEEIERVMAGLEAYLSIRRHTSDTGLSFFEED 729
            ++L+L++G+      ++  ++ ++E    V+  +L      +   + +CA ++P K  +Y TLVGLLN +N  F  + V+   + F+++L     D  R  +RFL  ++   ++   SL+ + +T+       +D    +   Q R D++V  +LS LPW G +L E+    +E ++  +E YL+ R       L  +  D
Sbjct:   35 ESLILRVGER-----STSSVESNLEGLVSVLEADLGTFRLKILRILSDCAVRMPEKCTVYTTLVGLLNAKNYKFGGEFVDHMVKTFKESLKLCRWDAARYSLRFLADLVNCHVISATSLLQLLDTM-------IDVSNEDTVPQVRRDWFVFAVLSTLPWVGRDLYEKKESALESLLLRIEVYLNKRSKKHHNALRVWSSD 223          
BLAST of CX671678 vs. ExPASy Swiss-Prot
Match: NCBP1_CAEEL (Nuclear cap-binding protein subunit 1 OS=Caenorhabditis elegans GN=ncbp-1 PE=2 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 6.614e-15
Identity = 56/201 (27.86%), Postives = 94/201 (46.77%), Query Frame = 1
Query:  142 KIGDNCPEYGNSDDLKDHIETCFGVIRRELEHSFDDVPHYIINCAEQIPHKIPLYGTLVGLLNLENEDFVKKVVETTQRKFQDALDSGNCDRIRILMRFLTVMMCSKILQPGSLVVVFETLLSSAATTVDEDKGNPSWQARADFYVTCILSCLPWGGAELIEQVPEEIERVMAGLEAYLSIRRHTSDTGLSFFEEDDESGK 744
            K+G+N         ++ +++     +  +LE     +   I  CA  +P+++ +Y TLVGLLN +N +F   VVE    + QD L        + L  FL  +  S +L   S+    E+ +++A      ++  P  Q R D+Y+  +L CLPW G EL E+ PE++E +   +  YL +R       L  + E     K
Sbjct:   37 KVGEN-----TGSSIECNLDKLTAFLHDDLEKYRASIIDIIAGCAIYLPNRVTVYTTLVGLLNSKNFNFGGDVVEKLISEQQDLLSKQKYQEAQNLAIFLCDLGNSGVLTAQSIGEYLESFIAAAF-----EENMP--QVRNDYYIQTVLRCLPWIGKELTEKAPEQMENIGEAIGKYLELRNKNHVALLQVWREGSTDQK 225          
BLAST of CX671678 vs. ExPASy Swiss-Prot
Match: NCBP1_DICDI (Nuclear cap-binding protein subunit 1 OS=Dictyostelium discoideum GN=ncbp1 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.282e-14
Identity = 46/190 (24.21%), Postives = 96/190 (50.53%), Query Frame = 1
Query:  118 SSWKNLLLKIGDNCPEYGNSDDLKDHIETCFGVIRRELEHSFDDVPHYIINCAEQIPHKIPLYGTLVGLLNLENEDFVKKVVETTQRKFQDALDSGNCDRIRILMRFLTVMMCSKILQPGSLVVVFETLLSSAATTVDEDKGNPSWQARADFYVTCILSCLPWGGAELIEQVPEEIERVMAGLEAYLSIR 687
            S   +L+++IGD       +  L+ +I+     +  ++      +   +  C   + +K P+Y TLVGL+N++N +F K+VV     +   A++       ++L+RF+  ++ + +L   ++  ++ETLLS     ++     P+   +AD++V  +LS +PW G  L      +++ V+   E+Y+  R
Sbjct:   38 SKLTSLIVRIGDKA-----TSSLESNIDALANALLADIPKQSSLIQDILFKCVSSLTYKTPIYATLVGLINVKNSEFGKEVVCRLVDEIFSAMEKKKFHNAKLLIRFIPELVNANVLTINAIFELYETLLS----VLNTSDYTPN---KADYFVFLVLSTIPWIGEHLSHNHSGQLDAVIEECESYIQSR 215          
BLAST of CX671678 vs. ExPASy Swiss-Prot
Match: NCBP1_CAEBR (Nuclear cap-binding protein subunit 1 OS=Caenorhabditis briggsae GN=ncbp-1 PE=3 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 3.282e-14
Identity = 52/182 (28.57%), Postives = 89/182 (48.90%), Query Frame = 1
Query:  142 KIGDNCPEYGNSDDLKDHIETCFGVIRRELEHSFDDVPHYIINCAEQIPHKIPLYGTLVGLLNLENEDFVKKVVETTQRKFQDALDSGNCDRIRILMRFLTVMMCSKILQPGSLVVVFETLLSSAATTVDEDKGNPSWQARADFYVTCILSCLPWGGAELIEQVPEEIERVMAGLEAYLSIR 687
            K+GD          ++ ++E     +  +LE     +   +  CA  +P+++ +Y TLVGLLN +N +F   VVE    + QD L        + L  FL  +  S +L   S+    E+ +++A      ++  P  Q R D+Y+  +L CLPW G EL E+  E++E ++  +  YL +R
Sbjct:   37 KVGDK----NTGSSIEANLEKLTAFLHDDLEKYRSSIIDIVAGCAIYLPNRVTVYTTLVGLLNAKNFNFGGDVVEKLIAEQQDLLLKQKYQEAQNLAIFLCDLGNSGVLTAQSIGEYLESFIAAAF-----EENMP--QVRNDYYIQTVLRCLPWIGKELTEKAQEQMENIVEAVGKYLEMR 207          
The following BLAST results are available for this feature:
BLAST of CX671678 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
NCBP1_DROMO6.614e-1525.37Nuclear cap-binding protein subunit 1 OS=Drosophil... [more]
NCBP1_DROGR6.614e-1525.37Nuclear cap-binding protein subunit 1 OS=Drosophil... [more]
NCBP1_DROAN6.614e-1525.37Nuclear cap-binding protein subunit 1 OS=Drosophil... [more]
NCBP1_CAEEL6.614e-1527.86Nuclear cap-binding protein subunit 1 OS=Caenorhab... [more]
NCBP1_DICDI3.282e-1424.21Nuclear cap-binding protein subunit 1 OS=Dictyoste... [more]
NCBP1_CAEBR3.282e-1428.57Nuclear cap-binding protein subunit 1 OS=Caenorhab... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_12E03_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12E03-J6-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671678 ID=CX671678; Name=CX671678; organism=Citrus sinensis; type=EST; length=765bp
GTTCAAGTTAATTGGAATCCAATTTGCCACTAAACCCTGCAAATCCCCTT
CTTCTTACTAAACTGCTGGCTCTTCCTCTGCTTCTGCTTCTCTCACGGAA
CAAGAGATTAAGAAATGAGCAGCTGGAAGAACCTTCTGCTTAAAATCGGG
GACAATTGTCCGGAGTACGGCAACTCCGACGACTTGAAGGATCACATTGA
AACATGCTTCGGCGTAATTCGGCGAGAACTCGAGCACTCTTTTGACGATG
TTCCACATTATATTATTAATTGTGCTGAGCAAATTCCACACAAGATTCCT
TTATATGGGACATTGGTTGGCTTGCTGAACTTGGAAAATGAGGACTTTGT
TAAAAAAGTTGTGGAGACCACTCAAAGAAAATTCCAGGATGCCTTAGACT
CTGGAAACTGCGACCGCATTCGTATTTTGATGCGATTTTTGACTGTTATG
ATGTGTAGCAAAATTCTCCAGCCTGGTTCTCTGGTGGTGGTCTTTGAAAC
TTTATTGTCATCAGCTGCCACAACAGTGGATGAGGACAAAGGAAATCCTT
CCTGGCAAGCACGTGCTGACTTTTATGTAACTTGCATTTTGTCTTGTCTC
CCATGGGGAGGAGCAGAACTCATTGAGCAAGTTCCTGAGGAAATTGAGAG
AGTCATGGCTGGTTTGGAAGCCTACTTGAGCATTAGAAGGCATACTTCTG
ACACCGGTCTGTCTTTCTTTGAGGAAGATGATGAATCTGGGAAAGGTCTT
GTTGAAAAGGATTTC
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