CX671678
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX671678 vs. ExPASy Swiss-Prot
Match: NCBP1_DROMO (Nuclear cap-binding protein subunit 1 OS=Drosophila mojavensis GN=Cbp80 PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 6.614e-15 Identity = 51/201 (25.37%), Postives = 100/201 (49.75%), Query Frame = 1 Query: 127 KNLLLKIGDNCPEYGNSDDLKDHIETCFGVIRRELEHSFDDVPHYIINCAEQIPHKIPLYGTLVGLLNLENEDFVKKVVETTQRKFQDALDSGNCDRIRILMRFLTVMMCSKILQPGSLVVVFETLLSSAATTVDEDKGNPSWQARADFYVTCILSCLPWGGAELIEQVPEEIERVMAGLEAYLSIRRHTSDTGLSFFEED 729 ++L+L++G+ ++ ++ ++E V+ +L + + +CA ++P K +Y TLVGLLN +N F + V+ + F+++L D R +RFL ++ ++ SL+ + +T+ +D + Q R D++V +LS LPW G +L E+ +E ++ +E YL+ R L + D Sbjct: 35 ESLILRVGER-----STSSVESNLEGLVSVLEADLGTFRLKILRILSDCAVRMPEKCTVYTTLVGLLNAKNYKFGGEFVDHMVKTFKESLKLCRWDAARYSLRFLADLVNCHVISATSLLQLLDTM-------IDVSNEDTVPQVRRDWFVFAVLSTLPWVGRDLYEKKESALESLLLRIEVYLNKRSKKHHNALRVWSSD 223
BLAST of CX671678 vs. ExPASy Swiss-Prot
Match: NCBP1_DROGR (Nuclear cap-binding protein subunit 1 OS=Drosophila grimshawi GN=Cbp80 PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 6.614e-15 Identity = 51/201 (25.37%), Postives = 100/201 (49.75%), Query Frame = 1 Query: 127 KNLLLKIGDNCPEYGNSDDLKDHIETCFGVIRRELEHSFDDVPHYIINCAEQIPHKIPLYGTLVGLLNLENEDFVKKVVETTQRKFQDALDSGNCDRIRILMRFLTVMMCSKILQPGSLVVVFETLLSSAATTVDEDKGNPSWQARADFYVTCILSCLPWGGAELIEQVPEEIERVMAGLEAYLSIRRHTSDTGLSFFEED 729 ++L+L++G+ ++ ++ ++E V+ +L + + +CA ++P K +Y TLVGLLN +N F + V+ + F+++L D R +RFL ++ ++ SL+ + +T+ +D + Q R D++V +LS LPW G +L E+ +E ++ +E YL+ R L + D Sbjct: 35 ESLILRVGER-----STSSVESNLEGLVSVLEADLGTFRLKILRILSDCAVRMPEKCTVYTTLVGLLNAKNYKFGGEFVDHMVKTFKESLKLCRWDAARYSLRFLADLVNCHVISATSLLQLLDTM-------IDVSNEDTVPQVRRDWFVFAVLSTLPWVGRDLYEKKESSLESLLLRIEVYLNKRSKKHHNALRVWTSD 223
BLAST of CX671678 vs. ExPASy Swiss-Prot
Match: NCBP1_DROAN (Nuclear cap-binding protein subunit 1 OS=Drosophila ananassae GN=Cbp80 PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 6.614e-15 Identity = 51/201 (25.37%), Postives = 100/201 (49.75%), Query Frame = 1 Query: 127 KNLLLKIGDNCPEYGNSDDLKDHIETCFGVIRRELEHSFDDVPHYIINCAEQIPHKIPLYGTLVGLLNLENEDFVKKVVETTQRKFQDALDSGNCDRIRILMRFLTVMMCSKILQPGSLVVVFETLLSSAATTVDEDKGNPSWQARADFYVTCILSCLPWGGAELIEQVPEEIERVMAGLEAYLSIRRHTSDTGLSFFEED 729 ++L+L++G+ ++ ++ ++E V+ +L + + +CA ++P K +Y TLVGLLN +N F + V+ + F+++L D R +RFL ++ ++ SL+ + +T+ +D + Q R D++V +LS LPW G +L E+ +E ++ +E YL+ R L + D Sbjct: 35 ESLILRVGER-----STSSVESNLEGLVSVLEADLGTFRLKILRILSDCAVRMPEKCTVYTTLVGLLNAKNYKFGGEFVDHMVKTFKESLKLCRWDAARYSLRFLADLVNCHVISATSLLQLLDTM-------IDVSNEDTVPQVRRDWFVFAVLSTLPWVGRDLYEKKESALESLLLRIEVYLNKRSKKHHNALRVWSSD 223
BLAST of CX671678 vs. ExPASy Swiss-Prot
Match: NCBP1_CAEEL (Nuclear cap-binding protein subunit 1 OS=Caenorhabditis elegans GN=ncbp-1 PE=2 SV=3) HSP 1 Score: 81.2629 bits (199), Expect = 6.614e-15 Identity = 56/201 (27.86%), Postives = 94/201 (46.77%), Query Frame = 1 Query: 142 KIGDNCPEYGNSDDLKDHIETCFGVIRRELEHSFDDVPHYIINCAEQIPHKIPLYGTLVGLLNLENEDFVKKVVETTQRKFQDALDSGNCDRIRILMRFLTVMMCSKILQPGSLVVVFETLLSSAATTVDEDKGNPSWQARADFYVTCILSCLPWGGAELIEQVPEEIERVMAGLEAYLSIRRHTSDTGLSFFEEDDESGK 744 K+G+N ++ +++ + +LE + I CA +P+++ +Y TLVGLLN +N +F VVE + QD L + L FL + S +L S+ E+ +++A ++ P Q R D+Y+ +L CLPW G EL E+ PE++E + + YL +R L + E K Sbjct: 37 KVGEN-----TGSSIECNLDKLTAFLHDDLEKYRASIIDIIAGCAIYLPNRVTVYTTLVGLLNSKNFNFGGDVVEKLISEQQDLLSKQKYQEAQNLAIFLCDLGNSGVLTAQSIGEYLESFIAAAF-----EENMP--QVRNDYYIQTVLRCLPWIGKELTEKAPEQMENIGEAIGKYLELRNKNHVALLQVWREGSTDQK 225
BLAST of CX671678 vs. ExPASy Swiss-Prot
Match: NCBP1_DICDI (Nuclear cap-binding protein subunit 1 OS=Dictyostelium discoideum GN=ncbp1 PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 3.282e-14 Identity = 46/190 (24.21%), Postives = 96/190 (50.53%), Query Frame = 1 Query: 118 SSWKNLLLKIGDNCPEYGNSDDLKDHIETCFGVIRRELEHSFDDVPHYIINCAEQIPHKIPLYGTLVGLLNLENEDFVKKVVETTQRKFQDALDSGNCDRIRILMRFLTVMMCSKILQPGSLVVVFETLLSSAATTVDEDKGNPSWQARADFYVTCILSCLPWGGAELIEQVPEEIERVMAGLEAYLSIR 687 S +L+++IGD + L+ +I+ + ++ + + C + +K P+Y TLVGL+N++N +F K+VV + A++ ++L+RF+ ++ + +L ++ ++ETLLS ++ P+ +AD++V +LS +PW G L +++ V+ E+Y+ R Sbjct: 38 SKLTSLIVRIGDKA-----TSSLESNIDALANALLADIPKQSSLIQDILFKCVSSLTYKTPIYATLVGLINVKNSEFGKEVVCRLVDEIFSAMEKKKFHNAKLLIRFIPELVNANVLTINAIFELYETLLS----VLNTSDYTPN---KADYFVFLVLSTIPWIGEHLSHNHSGQLDAVIEECESYIQSR 215
BLAST of CX671678 vs. ExPASy Swiss-Prot
Match: NCBP1_CAEBR (Nuclear cap-binding protein subunit 1 OS=Caenorhabditis briggsae GN=ncbp-1 PE=3 SV=3) HSP 1 Score: 78.9518 bits (193), Expect = 3.282e-14 Identity = 52/182 (28.57%), Postives = 89/182 (48.90%), Query Frame = 1 Query: 142 KIGDNCPEYGNSDDLKDHIETCFGVIRRELEHSFDDVPHYIINCAEQIPHKIPLYGTLVGLLNLENEDFVKKVVETTQRKFQDALDSGNCDRIRILMRFLTVMMCSKILQPGSLVVVFETLLSSAATTVDEDKGNPSWQARADFYVTCILSCLPWGGAELIEQVPEEIERVMAGLEAYLSIR 687 K+GD ++ ++E + +LE + + CA +P+++ +Y TLVGLLN +N +F VVE + QD L + L FL + S +L S+ E+ +++A ++ P Q R D+Y+ +L CLPW G EL E+ E++E ++ + YL +R Sbjct: 37 KVGDK----NTGSSIEANLEKLTAFLHDDLEKYRSSIIDIVAGCAIYLPNRVTVYTTLVGLLNAKNFNFGGDVVEKLIAEQQDLLLKQKYQEAQNLAIFLCDLGNSGVLTAQSIGEYLESFIAAAF-----EENMP--QVRNDYYIQTVLRCLPWIGKELTEKAQEQMENIVEAVGKYLEMR 207 The following BLAST results are available for this feature:
BLAST of CX671678 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 26
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX671678 ID=CX671678; Name=CX671678; organism=Citrus sinensis; type=EST; length=765bpback to top |