CX671673

Overview
NameCX671673
Unique NameCX671673
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length858
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671673 vs. ExPASy Swiss-Prot
Match: EF1A_THEVO (Elongation factor 1-alpha OS=Thermoplasma volcanium GN=tuf PE=3 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 2.984e-38
Identity = 75/154 (48.70%), Postives = 104/154 (67.53%), Query Frame = -1
Query:  397 SVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 858
            S+EMHHE LQ+A PGDN+GFNV+ +A  D+KRG V  +  D P      FT+Q++++NHP  I  GY PV   HT+ +A K  E+V  ++ + G  L+ +P F+K GD  +VK+IP KP+V+E  S+ P LGRFAVRDM QTVA G   ++EK+
Sbjct:  272 SIEMHHEPLQQAEPGDNIGFNVRGIAKNDIKRGDVCGHL-DSPPTVVRAFTAQIVVLNHPSVIAPGYKPVFHVHTAQVACKIDEIVRTLNPKDGTTLKDKPDFIKTGDIAIVKVIPDKPLVIEKVSEIPQLGRFAVRDMGQTVAAGQCIDLEKR 424          
BLAST of CX671673 vs. ExPASy Swiss-Prot
Match: EF1A_IGNH4 (Elongation factor 1-alpha OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=tuf PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.984e-38
Identity = 73/152 (48.03%), Postives = 108/152 (71.05%), Query Frame = -1
Query:  403 SVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVE 858
            S+EMHHE +++A+PGDN+GFNV+ V+  D+KRG VA + ++ P   A  FT++V ++ HP  I  GY PV+  HT+ +A +  E+  KID R+GK +E+ P FLK GDA +V   P KPMV+E F ++ PLGRFA+RDM +TV +G++ +V+
Sbjct:  282 SIEMHHEKIEQAMPGDNIGFNVRGVSKNDIKRGDVAGHPENPPT-VADQFTARVFVIWHPSAIAVGYTPVIHAHTASVASRIIEIKQKIDPRTGKVIEENPSFLKPGDAAVVVFKPLKPMVIEKFQEFQPLGRFAMRDMGKTVGIGIVTDVK 432          
BLAST of CX671673 vs. ExPASy Swiss-Prot
Match: EF1A_THEPD (Elongation factor 1-alpha OS=Thermofilum pendens (strain Hrk 5) GN=tuf PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.897e-38
Identity = 73/155 (47.10%), Postives = 108/155 (69.68%), Query Frame = -1
Query:  394 SVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 858
            S+E HH  LQEA+PGDN+GFNVK V    L+RG VA ++ + P   A  FT ++ ++ HP  I  GY PVL  HT+ + V F EL+ K+D R+G   E++P+++K GD+ +V+  P KP+VVE +S++PPLGRFA+RD  +T+A GV+ +V+K +
Sbjct:  278 SIETHHTPLQEAIPGDNIGFNVKGVEKSQLRRGDVAGHTTNPPT-VAEEFTGRIFVLYHPTAIAAGYTPVLHIHTATVPVTFEELLQKLDPRTGSVAEEKPQYIKQGDSAIVRFKPRKPVVVEKYSEFPPLGRFAIRDSGRTIAAGVVIDVKKAE 431          
BLAST of CX671673 vs. ExPASy Swiss-Prot
Match: EF1A_METB6 (Elongation factor 1-alpha OS=Methanoregula boonei (strain 6A8) GN=tuf PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 5.090e-38
Identity = 76/154 (49.35%), Postives = 103/154 (66.88%), Query Frame = -1
Query:  397 SVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 858
            S+EMHHE + +A+PGDNVGFNV+ +A  D++RG V   ++  P   A  FT+QV+++ HP  I  GY PV  CHT+  A  F EL  K+D RSG+  E+ P FLK GDA +V++ PTKPMV+E   + P LGRFAVRDM  T+A G+   ++ K
Sbjct:  270 SIEMHHEEIPQAVPGDNVGFNVRGIAKGDIRRGDVCGPAEQPPT-VADEFTAQVVVLQHPSAITVGYTPVFHCHTTQTACTFIELKKKLDPRSGQTKEENPTFLKTGDAAIVQIKPTKPMVIENVKELPQLGRFAVRDMGSTIAAGMCIAIQPK 422          
BLAST of CX671673 vs. ExPASy Swiss-Prot
Match: EF1A_SULAC (Elongation factor 1-alpha OS=Sulfolobus acidocaldarius GN=tuf PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 6.647e-38
Identity = 78/154 (50.65%), Postives = 108/154 (70.13%), Query Frame = -1
Query:  397 SVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKK 858
            S+E HH  + +A PGDN+GFNV+ V  KD+KRG VA  S  +P   A  FT+QVI++ HP  +G GY PVL  HT+ IA + SE+ ++ID ++GKE EK P+F+K GD+ +VK  P K +V E F ++P LGRFA+RDM +TV VGVI +V+ +
Sbjct:  278 SIETHHTKIDKAEPGDNIGFNVRGVEKKDVKRGDVAG-SVQNPPTVADEFTAQVIVIWHPTAVGVGYTPVLHVHTASIACRVSEITSRIDPKTGKEAEKNPQFIKAGDSAIVKFKPIKELVAEKFREFPALGRFAMRDMGKTVGVGVIIDVKPR 430          
BLAST of CX671673 vs. ExPASy Swiss-Prot
Match: EF1A_METVS (Elongation factor 1-alpha OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=tuf PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 6.647e-38
Identity = 76/155 (49.03%), Postives = 106/155 (68.39%), Query Frame = -1
Query:  394 SVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 858
            +VEMHHE L  A PGDN+GFNV+ V  KD+KRG V  ++ + P   A +FT+Q++++ HP  +  GY PV   HT+ IA  F+E+  K++  +G+ LE+ P FLK GDA +VK+IPTKPMV+E+  + P LGRFA+RDM  TVA G+   V  K+
Sbjct:  274 TVEMHHEQLPSAEPGDNIGFNVRGVGKKDIKRGDVLGHTTNPPT-VATDFTAQIVVLQHPSVLTVGYTPVFHTHTAQIACTFAEIQKKLNPATGEVLEENPDFLKAGDAAIVKLIPTKPMVIESVKEIPQLGRFAIRDMGMTVAAGMAIQVTAKN 427          
BLAST of CX671673 vs. ExPASy Swiss-Prot
Match: EF1A_METS3 (Elongation factor 1-alpha OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=tuf PE=3 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 6.647e-38
Identity = 76/151 (50.33%), Postives = 100/151 (66.23%), Query Frame = -1
Query:  406 SVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNV 858
            S+EMHHE  + A PGDN+GFNV+ V   D++RG VA +  D PA  A  F +Q++++ HPG I  GY PV  CHTS +A  F EL  K+D  +G+  E+ P FLK G+A  VK+ PTKPMV+E     P +GRFA+RDM QTVA G+  +V
Sbjct:  260 SIEMHHETFETAEPGDNIGFNVRGVGKNDIRRGDVAGHVDDAPA-VAKEFDAQIVVLQHPGVITVGYTPVFHCHTSQVACTFLELTAKLDPATGQVAEENPDFLKTGNAAFVKVKPTKPMVIENAKKIPQMGRFAIRDMGQTVAAGLCIDV 409          
BLAST of CX671673 vs. ExPASy Swiss-Prot
Match: EF1A_GIALA (Elongation factor 1-alpha (Fragment) OS=Giardia lamblia GN=TEF1 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 6.647e-38
Identity = 75/137 (54.74%), Postives = 99/137 (72.26%), Query Frame = -1
Query:  448 SVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVR 858
            SVEMHHE L++A PGDNVGFNV+ +AVKDLK+G+V  +  +DP     +FT+QVI+MNHP +I  GY PV+DCHT+HIA +F   + K+D+R+ K   + P     GD  +VKM+P KP+  ETF+DY PLG FAVR
Sbjct:  260 SVEMHHEELKKAGPGDNVGFNVRGLAVKDLKKGYVVGDVTNDPPVGCKSFTAQVIVMNHPKKIQPGYTPVIDCHTAHIACQFQLFLQKLDKRTLKPEMENPPDAGRGDCIIVKMVPQKPLCCETFNDYAPLGPFAVR 396          
BLAST of CX671673 vs. ExPASy Swiss-Prot
Match: EF1A_DESMO (Elongation factor 1-alpha OS=Desulfurococcus mobilis GN=tuf PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 6.647e-38
Identity = 74/152 (48.68%), Postives = 106/152 (69.74%), Query Frame = -1
Query:  403 SVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVE 858
            ++E HH  +++A PGDN+GFNVK V  KD+KRG VA  S D P   A  FT+++++M HP  I  GY PV+  HT+ +A + +E++ KID R+GKE+EK P FLK GD  +VK  P KP+VVE +SD+  LGRFA+RDM +T+ +G +  ++
Sbjct:  280 TIETHHTKIEKAEPGDNIGFNVKGVEKKDIKRGDVAG-SLDVPPTVADEFTARIMVMWHPTAIAVGYTPVIHVHTASVACRITEIIAKIDPRTGKEIEKNPHFLKQGDIAIVKFKPIKPLVVEKYSDFQGLGRFAMRDMGKTIGIGQVLEIK 430          
BLAST of CX671673 vs. ExPASy Swiss-Prot
Match: EF1A_METM7 (Elongation factor 1-alpha OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=tuf PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.134e-37
Identity = 76/155 (49.03%), Postives = 106/155 (68.39%), Query Frame = -1
Query:  394 SVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEKKD 858
            +VEMHHE L  A PGDN+GFNV+ V  KD+KRG V  ++ + P   AA+FT+Q++++ HP  +  GY PV   HT+ IA  F EL  K++  +G+ LE+ P FLK GDA +VK++PTKP+V+E+  + P LGRFA+RDM  TVA G+   V  K+
Sbjct:  274 TVEMHHEQLPSAEPGDNIGFNVRGVGKKDIKRGDVLGHTTNPPT-VAADFTAQIVVLQHPSVMTVGYTPVFHAHTAQIACTFMELQKKLNPATGEVLEENPDFLKAGDAAIVKLMPTKPLVIESVKEIPQLGRFAIRDMGMTVAAGMAIQVTAKN 427          
The following BLAST results are available for this feature:
BLAST of CX671673 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
EF1A_THEVO2.984e-3848.70Elongation factor 1-alpha OS=Thermoplasma volcaniu... [more]
EF1A_IGNH42.984e-3848.03Elongation factor 1-alpha OS=Ignicoccus hospitalis... [more]
EF1A_THEPD3.897e-3847.10Elongation factor 1-alpha OS=Thermofilum pendens (... [more]
EF1A_METB65.090e-3849.35Elongation factor 1-alpha OS=Methanoregula boonei ... [more]
EF1A_SULAC6.647e-3850.65Elongation factor 1-alpha OS=Sulfolobus acidocalda... [more]
EF1A_METVS6.647e-3849.03Elongation factor 1-alpha OS=Methanococcus vanniel... [more]
EF1A_METS36.647e-3850.33Elongation factor 1-alpha OS=Methanobrevibacter sm... [more]
EF1A_GIALA6.647e-3854.74Elongation factor 1-alpha (Fragment) OS=Giardia la... [more]
EF1A_DESMO6.647e-3848.68Elongation factor 1-alpha OS=Desulfurococcus mobil... [more]
EF1A_METM71.134e-3749.03Elongation factor 1-alpha OS=Methanococcus maripal... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_12E01_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12E01-J2-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671673 ID=CX671673; Name=CX671673; organism=Citrus sinensis; type=EST; length=858bp
TTTTTTTTTTTTTTAGAATAGAAAAACGAAAAGTAGATATCAATTCCGCA
GAAACAACACAATGACAAAACTTCTGAGCCGATTCAGATGAAACCGAACC
ACCTCAAGTATCAATACAAACAAAGACCATAACTATTAATAAAATTGAGA
CTCCAGGTTAGAGCTGCGCCACCGCCTGTCAAGCACCCAATTCTGGGAAT
CGGTACCCGACACCAAAGGCAACAAACTAAAACCTACAAAGGAAAGCAAG
CATCGAACTATAACAGTACCAAAAATAACCAAGTTTGTATAACTACAATT
ATTAAAATAGACTCCATCTGCGGATAAAGCAACATTAACCAACCCGATTC
ACTTCTTCTTGGCTGCAGACTTGGTGACCTTGGCACCTGTTGGATCCTTC
TTTTCAACATTCTTAATCACACCAACAGCAACAGTCTGACGCATGTCCCT
AACGGCAAAACGACCAAGAGGTGGGTAGTCAGAGAAGGTTTCAACAACCA
TGGGCTTGGTGGGAATCATCTTAACCATTCCAGCGTCTCCATTCTTCAAG
AACTTGGGCTCCTTCTCAAGCTCCTTGCCTGATCGCCTATCAATCTTCGT
CACGAGCTCAGAAAACTTGACGGCAATGTGGGAGGTGTGGCAGTCAAGCA
CTGGGGCATATCCATTTCCAATCTGGCCAGGGTGGTTCATGATGATGACC
TGTGAGGTGAAGTTGGCAGCTTCCCTGGCCGGATCATCCTTCGAGTTGGA
AGCAACAAAACCACGCTTGAGATCCTTGACAGCAACGTTCTTCACGTTGA
AGCCAACATTGTCACCCGGAAGGGCCTCCTGCAGAGCTTCGTGGTGCATC
TCAACAGA
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