CX671673

Overview
NameCX671673
Unique NameCX671673
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length858
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7124 contig Csv1_Contig7124:914..1771. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671673 vs. ExPASy Swiss-Prot
Match: ERF3_SCHPO (Eukaryotic peptide chain release factor GTP-binding subunit OS=Schizosaccharomyces pombe GN=sup35 PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 3.322e-13
Identity = 44/145 (30.34%), Postives = 78/145 (53.79%), Query Frame = -1
Query:  406 EALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNV 840
            E +  ++ GD V   V+     D++ G+V +++K+ P      F +Q+ I+  P  +  GY+ V+  HT+   V F++L+ K+D+ + K  +K P F   G   + ++    P+ +E F DY  +GRF +RD   TVAVG +  +
Sbjct:  519 EEISSSICGDQVRLRVRGDD-SDVQTGYVLTSTKN-PVHATTRFIAQIAILELPSILTTGYSCVMHIHTAVEEVSFAKLLHKLDKTNRKS-KKPPMFATKGMKIIAELETQTPVCMERFEDYQYMGRFTLRDQGTTVAVGKVVKI 660          
BLAST of CX671673 vs. ExPASy Swiss-Prot
Match: HBS1L_RAT (HBS1-like protein OS=Rattus norvegicus GN=Hbs1l PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.396e-11
Identity = 37/152 (24.34%), Postives = 76/152 (50.00%), Query Frame = -1
Query:  400 VEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEK 855
            + +H E +  A  GD+V   +  + +  +  G +    K+ P +    F ++++I N    I  G+  +L   T         L++ +++ +G+  +K+PK L  G   +V++   +P+ +E + D+  LGRF +R    TVA GV+  +++
Sbjct:  529 ITLHDEPVDWAAAGDHVSLTLVGMDIIKINVGCIFCGPKE-PIKACTRFRARILIFNIEVPITKGFPVLLHYQTVSEPAVIKRLISVLNKSTGEVTKKKPKLLTKGQNALVELQTQRPVALELYKDFKELGRFMLRYGGSTVAAGVVTEIKE 679          
BLAST of CX671673 vs. ExPASy Swiss-Prot
Match: HBS1L_MOUSE (HBS1-like protein OS=Mus musculus GN=Hbs1l PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.823e-11
Identity = 36/152 (23.68%), Postives = 76/152 (50.00%), Query Frame = -1
Query:  400 VEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEK 855
            + +H E +  A  GD+V   +  + +  +  G +    K+ P +    F +++++ N    I  G+  +L   T         L++ +++ +G+  +K+PK L  G   +V++   +P+ +E + D+  LGRF +R    TVA GV+  +++
Sbjct:  532 ITLHDEPVDWAAAGDHVNLTLVGMDIIKINVGCIFCGPKE-PIKACTRFRARILVFNIEVPITKGFPVLLHYQTVSEPAVIKRLISVLNKSTGEVTKKKPKLLTKGQNALVELQTQRPVALELYKDFKELGRFMLRYGGSTVAAGVVTEIKE 682          
BLAST of CX671673 vs. ExPASy Swiss-Prot
Match: HBS1L_HUMAN (HBS1-like protein OS=Homo sapiens GN=HBS1L PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.823e-11
Identity = 37/152 (24.34%), Postives = 76/152 (50.00%), Query Frame = -1
Query:  400 VEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEK 855
            + +H E +  A  GD+V   +  + +  +  G +    K  P +    F ++++I N    I  G+  +L   T         L++ +++ +G+  +K+PKFL  G   +V++   +P+ +E + D+  LGRF +R    T+A GV+  +++
Sbjct:  534 ITLHDEPVDWAAAGDHVSLTLVGMDIIKINVGCIFCGPKV-PIKACTRFRARILIFNIEIPITKGFPVLLHYQTVSEPAVIKRLISVLNKSTGEVTKKKPKFLTKGQNALVELQTQRPIALELYKDFKELGRFMLRYGGSTIAAGVVTEIKE 684          
BLAST of CX671673 vs. ExPASy Swiss-Prot
Match: HBS1L_PONAB (HBS1-like protein OS=Pongo abelii GN=HBS1L PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.109e-11
Identity = 37/152 (24.34%), Postives = 76/152 (50.00%), Query Frame = -1
Query:  400 VEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVEK 855
            + +H E +  A  GD+V   +  + +  +  G +    K  P +    F ++++I N    I  G+  +L   T         L++ +++ +G+  +K+PKFL  G   +V++   +P+ +E + D+  LGRF +R    T+A GV+  +++
Sbjct:  534 ITLHDEPVDWAAAGDHVSLTLVGMDIIKINVGCIFCGPKV-PIKACTRFRARILIFNIEIPITKGFPVLLHYQTVSEPAVIKRLISVLNKSTGEVTKKKPKFLTKGQNALVELQTQRPIALELYKDFKELGRFMLRYGGSTIAAGVVTEMKE 684          
BLAST of CX671673 vs. ExPASy Swiss-Prot
Match: HBS1L_BOVIN (HBS1-like protein OS=Bos taurus GN=HBS1L PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.304e-11
Identity = 36/151 (23.84%), Postives = 75/151 (49.67%), Query Frame = -1
Query:  403 VEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKNVE 855
            + +H E +  A  GD+V   +  + +  +  G +    K+ P +    F ++++I N    I  G+  +L   T         L++ +++ +G+  +K+PK L  G   +V++   +P+ +E + D+  LGRF +R    T+A GV+  ++
Sbjct:  536 ITLHDEPVDWAAAGDHVSLTLVGMDIIKINVGCIFCVPKE-PIKVCTRFRARILIFNIEIPITKGFPVLLHYQTVSEPAVIKRLISVLNKSTGEVTKKKPKLLTKGQNALVELQTQRPVALELYKDFKELGRFMLRYSGSTIAAGVVTEIK 685          
The following BLAST results are available for this feature:
BLAST of CX671673 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
ERF3_SCHPO3.322e-1330.34Eukaryotic peptide chain release factor GTP-bindin... [more]
HBS1L_RAT1.396e-1124.34HBS1-like protein OS=Rattus norvegicus GN=Hbs1l PE... [more]
HBS1L_MOUSE1.823e-1123.68HBS1-like protein OS=Mus musculus GN=Hbs1l PE=1 SV... [more]
HBS1L_HUMAN1.823e-1124.34HBS1-like protein OS=Homo sapiens GN=HBS1L PE=1 SV... [more]
HBS1L_PONAB3.109e-1124.34HBS1-like protein OS=Pongo abelii GN=HBS1L PE=2 SV... [more]
HBS1L_BOVIN5.304e-1123.84HBS1-like protein OS=Bos taurus GN=HBS1L PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_12E01_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12E01-J2-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671673 ID=CX671673; Name=CX671673; organism=Citrus sinensis; type=EST; length=858bp
TTTTTTTTTTTTTTAGAATAGAAAAACGAAAAGTAGATATCAATTCCGCA
GAAACAACACAATGACAAAACTTCTGAGCCGATTCAGATGAAACCGAACC
ACCTCAAGTATCAATACAAACAAAGACCATAACTATTAATAAAATTGAGA
CTCCAGGTTAGAGCTGCGCCACCGCCTGTCAAGCACCCAATTCTGGGAAT
CGGTACCCGACACCAAAGGCAACAAACTAAAACCTACAAAGGAAAGCAAG
CATCGAACTATAACAGTACCAAAAATAACCAAGTTTGTATAACTACAATT
ATTAAAATAGACTCCATCTGCGGATAAAGCAACATTAACCAACCCGATTC
ACTTCTTCTTGGCTGCAGACTTGGTGACCTTGGCACCTGTTGGATCCTTC
TTTTCAACATTCTTAATCACACCAACAGCAACAGTCTGACGCATGTCCCT
AACGGCAAAACGACCAAGAGGTGGGTAGTCAGAGAAGGTTTCAACAACCA
TGGGCTTGGTGGGAATCATCTTAACCATTCCAGCGTCTCCATTCTTCAAG
AACTTGGGCTCCTTCTCAAGCTCCTTGCCTGATCGCCTATCAATCTTCGT
CACGAGCTCAGAAAACTTGACGGCAATGTGGGAGGTGTGGCAGTCAAGCA
CTGGGGCATATCCATTTCCAATCTGGCCAGGGTGGTTCATGATGATGACC
TGTGAGGTGAAGTTGGCAGCTTCCCTGGCCGGATCATCCTTCGAGTTGGA
AGCAACAAAACCACGCTTGAGATCCTTGACAGCAACGTTCTTCACGTTGA
AGCCAACATTGTCACCCGGAAGGGCCTCCTGCAGAGCTTCGTGGTGCATC
TCAACAGA
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