CX671659

Overview
NameCX671659
Unique NameCX671659
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length817
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671659 vs. ExPASy Swiss-Prot
Match: CH60_PEDPA (60 kDa chaperonin OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=groL PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.848e-50
Identity = 105/207 (50.72%), Postives = 146/207 (70.53%), Query Frame = -2
Query:  196 QLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 816
            QLG + KVT+ KD TTI+  A S+++I  R+  +K++++ET S +D EKL ER+AKLSGGVAVI+VGAATETEL+++K RIEDA NAT AA+EEG VPGGG AL ++   +  ++D   + DE  G +IV++AL  P   IA NA           K  +   GYNA  D++ +M++AG++DP KVTR ALQNAASV+ ++LTT+A+
Sbjct:  314 QLGQSNKVTVTKDDTTIVEGAGSQEQIAERVGIIKQQISETTSDFDKEKLQERLAKLSGGVAVIRVGAATETELKEKKYRIEDALNATRAAVEEGFVPGGGTALANV---ISDLEDVEAEGDEATGVNIVRRALEEPVRQIAENAGEEGSVIVTKLKGQKPGVGYNAANDEWVDMVEAGIVDPTKVTRSALQNAASVSALLLTTEAV 517          
BLAST of CX671659 vs. ExPASy Swiss-Prot
Match: CH60_GEMAT (60 kDa chaperonin OS=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) GN=groL PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.848e-50
Identity = 106/208 (50.96%), Postives = 154/208 (74.04%), Query Frame = -2
Query:  196 LGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKD-KLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTT-GYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 813
            LG+A+++ I KD+TTII  A  + +I+ R+ +++  + ++ S YD EKL ER+AKL+GGVAVI VGAATE E++++K R+EDA +AT AA+EEGIVPGGG AL+  + HV  +KD K+ + DE++G DIV++A+  P  +I  NA           + ++ T+ GYNA+TD YE+++QAGVIDP KVTR ALQNAAS+AG++LTT+A+
Sbjct:  317 LGSAKRIVIDKDNTTIIDGAGEQKDIEGRVREIRGAIDKSTSDYDREKLQERLAKLAGGVAVINVGAATEAEMKEKKARVEDALHATRAAVEEGIVPGGGVALIR-AQHV--LKDVKVAERDEQIGVDIVRRAIEEPLRMIVQNAGGEGSIVVEKIRTAKETSFGYNALTDVYEDLVQAGVIDPTKVTRTALQNAASIAGLLLTTEAL 521          
BLAST of CX671659 vs. ExPASy Swiss-Prot
Match: CH60_DESAP (60 kDa chaperonin OS=Desulforudis audaxviator (strain MP104C) GN=groL PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.848e-50
Identity = 104/206 (50.49%), Postives = 147/206 (71.36%), Query Frame = -2
Query:  196 LGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 813
            LG AR+V ++KD T ++      D I  R+AQ+KK++ +T S +D EKL ER+AKL+GGVAVI VGAATETE++++KLRIEDA NAT AA+EEGIVPGGG   V++   +  ++ +L   DER G DI+++AL AP   IA+NA           K+S    G++A++++Y +M+ AG++DPAKVTR ALQNAAS+A M+LTT+ +
Sbjct:  316 LGKARQVRVKKDETIVVDGQGDADAITKRLAQIKKQIEDTTSDFDREKLQERLAKLAGGVAVINVGAATETEMKEKKLRIEDALNATRAAVEEGIVPGGGTVYVNVIPVLNGLEPEL--PDERTGVDIIKRALEAPLRQIANNAGVEGSIVVEKVKESPAGVGFDALSEQYTDMIGAGIVDPAKVTRIALQNAASIAAMILTTETL 519          
BLAST of CX671659 vs. ExPASy Swiss-Prot
Match: CH602_SYNPX (60 kDa chaperonin 2 OS=Synechococcus sp. (strain WH8102) GN=groL2 PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.848e-50
Identity = 109/206 (52.91%), Postives = 148/206 (71.84%), Query Frame = -2
Query:  196 LGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 813
            LG AR+VTI K++TTI+A    +  +  R+A +K+EL  TDS YD EKL ERIAKL+GGVAVIKVGA TETEL++RKLRIEDA NAT AAIEEGIVPGGG  L+ L+D +  + ++LE  D+R G +I+Q+ALVAP   IA NA           ++S    G+NA+T  YE+++ AG++D AKV R A+Q+A S+A +++TT+ +
Sbjct:  315 LGKARRVTISKENTTIVATDDHRAAVADRVAAIKRELDATDSDYDREKLNERIAKLAGGVAVIKVGAPTETELKNRKLRIEDALNATRAAIEEGIVPGGGTTLLQLADGLNGLVEQLE-GDQRTGVEILQRALVAPVHHIATNAGHNGDVVIEAMRNS--GQGFNALTGTYEDLMAAGIVDAAKVVRLAVQDAVSIASLLITTEVV 517          
BLAST of CX671659 vs. ExPASy Swiss-Prot
Match: RUBC_CHLRE (RuBisCO large subunit-binding protein subunit beta-2 (Fragment) OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.413e-50
Identity = 101/208 (48.56%), Postives = 146/208 (70.19%), Query Frame = -2
Query:  196 LGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDS--EWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 813
            LG A KV+I K++TTI+ D  ++ +++ R+ Q++   AET+  Y+ EKL ERIA+LSGGVA+I+VGA TETEL+++KLR+EDA NAT AA+EEGIV GGG  L+ LS  V +IK+ L + ++++GADI+++AL  P  LIA+NA            D+  +   GYNA TD +E++++AG+IDP KV RC+L+NA SVA   L    +
Sbjct:   32 LGLAAKVSISKEATTIVGDGRTQQQVEGRVKQIRNLAAETEQEYEKEKLNERIARLSGGVAIIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVIGGGCTLLRLSQKVDSIKETLSNEEQKMGADIIKRALSYPIKLIANNAGTNGSVVMQRVMDNIDQPYYGYNAATDTFEDLMEAGIIDPTKVVRCSLENAVSVAKTFLLADVV 239          
BLAST of CX671659 vs. ExPASy Swiss-Prot
Match: CH60_PORPU (60 kDa chaperonin, chloroplastic OS=Porphyra purpurea GN=groL PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.413e-50
Identity = 112/206 (54.37%), Postives = 142/206 (68.93%), Query Frame = -2
Query:  196 LGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 813
            LG AR+V + KDSTTIIAD   +  +++R  Q+K+++  +DS+Y+ EKL ER+AKLSGGVAVIKVGAATETE++D+KLR+EDA NAT AAIEEGIVPGGG+  VH+S  +          DE +GA IVQ+AL  P   IA NA           K +++  GY+A   K  NM  AG+IDPAKV R ALQNA S+A MVLTT+ I
Sbjct:  317 LGKARRVVVTKDSTTIIADG-HEATVKSRCEQIKRQIETSDSLYEREKLQERLAKLSGGVAVIKVGAATETEMKDKKLRLEDAINATKAAIEEGIVPGGGSTNVHISGELFVWAKNNLFEDELIGALIVQRALTYPLRRIAFNAGDNGAVVVEKVKTNDFCIGYDASNGKIVNMYDAGIIDPAKVARSALQNATSIAAMVLTTECI 521          
BLAST of CX671659 vs. ExPASy Swiss-Prot
Match: CH60_HALOH (60 kDa chaperonin OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=groL PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.413e-50
Identity = 107/206 (51.94%), Postives = 142/206 (68.93%), Query Frame = -2
Query:  196 LGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 813
            LG A KVT+ K+ TTI+  A    EIQ RI Q++ ++  TDS +D EKL ER+AKL+GGVAVIKVGAATETEL+++K RIEDA +AT AA+EEG+V GGG  L+   D +PA+ +   + DE  G DIV+KAL AP  LIA NA           K  +   G++A   ++ NM+++G++DPAKVTR ALQNAAS A M+LTT+ +
Sbjct:  316 LGRAHKVTVTKEDTTIVEGAGDSKEIQNRIKQIRTQIENTDSDFDREKLQERLAKLAGGVAVIKVGAATETELKEKKHRIEDALSATRAAVEEGLVAGGGTTLI---DAIPALDELNLEGDEATGVDIVRKALEAPVRLIADNAGYEGSVIVEKVKSEDKGIGFDAYNGEFVNMIESGIVDPAKVTRSALQNAASAAAMLLTTECL 518          
BLAST of CX671659 vs. ExPASy Swiss-Prot
Match: CH60_BIFAS (60 kDa chaperonin OS=Bifidobacterium animalis subsp. lactis (strain DSM 10140 / JCM 10602 / LMG 18314) GN=groL PE=3 SV=2)

HSP 1 Score: 199.134 bits (505), Expect = 2.413e-50
Identity = 109/205 (53.17%), Postives = 139/205 (67.80%), Query Frame = -2
Query:  196 GTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 810
            GTA+KV + KD TTI++   SK+++ AR+AQ++ E+ +TDS YD EKL ER+AKL+GGVAVIKVGAATE E ++RK RIEDA     AAIEEG+VPGGG ALV  ++ V   KD   + DE  GA IV   + AP   IA NA           +      G+NA TD YE+++ AGV DP KVTR ALQNAAS+AG+ LTT+A+
Sbjct:  316 GTAKKVIVSKDETTIVSGGGSKEDVAARVAQIRAEIEKTDSDYDREKLQERLAKLAGGVAVIKVGAATEVEAKERKHRIEDAVRNAKAAIEEGLVPGGGVALVQAAEKVE--KDFNLEGDEATGAAIVFSGIEAPIKQIAENAGLSGAVVIDKVRSLPEGEGFNAATDTYEDLMAAGVTDPVKVTRSALQNAASIAGLFLTTEAV 518          
BLAST of CX671659 vs. ExPASy Swiss-Prot
Match: CH60_BIFA0 (60 kDa chaperonin OS=Bifidobacterium animalis subsp. lactis (strain AD011) GN=groL PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.413e-50
Identity = 109/205 (53.17%), Postives = 139/205 (67.80%), Query Frame = -2
Query:  196 GTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 810
            GTA+KV + KD TTI++   SK+++ AR+AQ++ E+ +TDS YD EKL ER+AKL+GGVAVIKVGAATE E ++RK RIEDA     AAIEEG+VPGGG ALV  ++ V   KD   + DE  GA IV   + AP   IA NA           +      G+NA TD YE+++ AGV DP KVTR ALQNAAS+AG+ LTT+A+
Sbjct:  316 GTAKKVIVSKDETTIVSGGGSKEDVAARVAQIRAEIEKTDSDYDREKLQERLAKLAGGVAVIKVGAATEVEAKERKHRIEDAVRNAKAAIEEGLVPGGGVALVQAAEKVE--KDFNLEGDEATGAAIVFSGIEAPIKQIAENAGLSGAVVIDKVRSLPEGEGFNAATDTYEDLMAAGVTDPVKVTRSALQNAASIAGLFLTTEAV 518          
BLAST of CX671659 vs. ExPASy Swiss-Prot
Match: CH60_STAS1 (60 kDa chaperonin OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=groL PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 3.152e-50
Identity = 107/206 (51.94%), Postives = 146/206 (70.87%), Query Frame = -2
Query:  196 LGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 813
            LGTA K  I KD+TT++     ++ I AR++Q+K ++ ETDS +D EKL ER+AKL+GGVAVIKVGAA+ETEL++RKLRIEDA N+T AA+EEGIV GGG A +++ + V  I+    + D   G +IV KAL AP   IA NA           K+++   G+NA T+++ NML+AG++DP KVTR +LQ+AASVA M LTT+A+
Sbjct:  315 LGTANKAEITKDNTTVVDGDGDQNSIDARVSQIKAQIEETDSEFDKEKLQERLAKLAGGVAVIKVGAASETELKERKLRIEDALNSTRAAVEEGIVAGGGTAFMNIYEKVAKIE---AEGDIATGINIVLKALEAPVRQIAENAGLEGSIIVERLKNADIGVGFNAATNEWVNMLEAGIVDPTKVTRSSLQHAASVAAMFLTTEAV 517          
The following BLAST results are available for this feature:
BLAST of CX671659 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_PEDPA1.848e-5050.7260 kDa chaperonin OS=Pediococcus pentosaceus (stra... [more]
CH60_GEMAT1.848e-5050.9660 kDa chaperonin OS=Gemmatimonas aurantiaca (stra... [more]
CH60_DESAP1.848e-5050.4960 kDa chaperonin OS=Desulforudis audaxviator (str... [more]
CH602_SYNPX1.848e-5052.9160 kDa chaperonin 2 OS=Synechococcus sp. (strain W... [more]
RUBC_CHLRE2.413e-5048.56RuBisCO large subunit-binding protein subunit beta... [more]
CH60_PORPU2.413e-5054.3760 kDa chaperonin, chloroplastic OS=Porphyra purpu... [more]
CH60_HALOH2.413e-5051.9460 kDa chaperonin OS=Halothermothrix orenii (strai... [more]
CH60_BIFAS2.413e-5053.1760 kDa chaperonin OS=Bifidobacterium animalis subs... [more]
CH60_BIFA02.413e-5053.1760 kDa chaperonin OS=Bifidobacterium animalis subs... [more]
CH60_STAS13.152e-5051.9460 kDa chaperonin OS=Staphylococcus saprophyticus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_12D06_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12D06-H12-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671659 ID=CX671659; Name=CX671659; organism=Citrus sinensis; type=EST; length=817bp
TTTTTTTTTTTTTTTTTACAAAAAAGACACGATTTTATATCAATTAAGTA
AAACTTGTCTTTTTCAGTTCACCGCAATAAAACCACTCTTTCATCTATAA
AACTCCTAACTAAATCTGGAGAGTCCTAGAGATTACACCATAAGACCTTG
TGGCGGAGCGGCTACCGGAGTTTTGGGCTTTGGCTTCTCCACGACAATAG
CCTGAGTGGTCAGGACCATTCCTGCAACTGAAGCCGCATTCTGCAATGCA
CATCTTGTCACCTTTGCAGGATCAATAACTCCAGCCTGAAGCATGTTCTC
ATACTTGTCTGTCATTGCATTGTAACCAGTCGTCCATTCACTATCTTTCA
CCTTCTCCACAACAACCTCACCTTCAACTCCAGCATTGTGAGCTATCAGT
GATGCAGGTGCTACCAGTGCCTTCTGCACAATGTCAGCACCTAATCGCTC
ATCTGCATCTTCAAGCTTGTCCTTGATAGCAGGAACATGATCAGACAGAT
GAACCAGAGCAGCACCACCACCAGGAACAATACCTTCCTCTATGGCTGCA
AAAGTTGCATTCTTGGCATCTTCAATACGGAGTTTACGGTCCTCAAGCTC
AGTTTCTGTGGCAGCTCCAACTTTAATAACAGCAACCCCGCCAGACAATT
TAGCAATTCTCTCAGCAAGTTTCTCTGAGTCATAAACAGAATCCGTCTCA
GCCAACTCCTTTTTCAGCTGTGCAATTCTAGCTTGTATTTCATCCTTTGA
TGCAGCATCAGCAATAATGGTAGTGGAGTCCTTTCTGATGGTCACCTTTC
TAGCTGTACCTAGCTGC
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