CX671641

Overview
NameCX671641
Unique NameCX671641
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length857
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX671641_ssr112 microsatellite CX671641_ssr112:112..123. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5079 contig Csv1_Contig5079:1..857. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671641 vs. ExPASy Swiss-Prot
Match: PME17_ARATH (Probable pectinesterase/pectinesterase inhibitor 17 OS=Arabidopsis thaliana GN=PME17 PE=2 SV=2)

HSP 1 Score: 271.166 bits (692), Expect = 5.356e-72
Identity = 130/207 (62.80%), Postives = 159/207 (76.81%), Query Frame = -3
Query:  232 QAVALRVGADHAVVYRCNVIGYQDTLYVHSNRQFYRECDIYGTVDFIFGNAAVVLQKCAIYARKPMAMQKNTITAQNRKDPNQNTGISIHDCSLYAAPDLQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVRWPGYRVITSATEASKFTVSQFIYGSSWLPSTGVAFLGGL 852
            QAVALR G+D +V Y+C+   YQDTLYVHSNRQFYR+CD+YGTVDFIFGNAA VLQ C I+AR+P + + NTITAQ R DPNQNTGI IH+  + AA DL+   GS  TYLGRPW+ YSR V+M T +   I PRGWLEW+G+FAL TL+Y E+ N+GPG++   RV WPG+RV+ SA+EASKFTV  F+ G SW+PS+ V F  GL
Sbjct:  307 QAVALRSGSDLSVFYQCSFEAYQDTLYVHSNRQFYRDCDVYGTVDFIFGNAAAVLQNCNIFARRPRS-KTNTITAQGRSDPNQNTGIIIHNSRVTAASDLRPVLGSTKTYLGRPWRQYSRTVFMKTSLDSLIDPRGWLEWDGNFALKTLFYAEFQNTGPGASTSGRVTWPGFRVLGSASEASKFTVGTFLAGGSWIPSS-VPFTSGL 511          
BLAST of CX671641 vs. ExPASy Swiss-Prot
Match: PME41_ARATH (Probable pectinesterase/pectinesterase inhibitor 41 OS=Arabidopsis thaliana GN=PME41 PE=2 SV=2)

HSP 1 Score: 269.626 bits (688), Expect = 1.558e-71
Identity = 126/208 (60.58%), Postives = 153/208 (73.56%), Query Frame = -3
Query:  232 HQAVALRVGADHAVVYRCNVIGYQDTLYVHSNRQFYRECDIYGTVDFIFGNAAVVLQKCAIYARKPMAMQKNTITAQNRKDPNQNTGISIHDCSLYAAPDLQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVRWPGYRVITSATEASKFTVSQFIYGSSWLPSTGVAFLGGL 855
            HQAVA+R  AD ++ Y C+   YQDTLY HS RQFYRECDIYGTVDFIFGNAAVV Q C +Y R+PM  Q N ITAQ R DPNQNTGISIH+C++  A DL +S  ++ TYLGRPWK YSR V+M +Y+ + ++P GW EWNGDFAL TLYY EY N+G GS+   RV WPGY VI S T+A+ FTV  F+ G  W+  +GV ++ GL
Sbjct:  365 HQAVAMRSSADLSIFYSCSFEAYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVFQDCNLYPRQPMQNQFNAITAQGRTDPNQNTGISIHNCTIKPADDLVSSNYTVKTYLGRPWKEYSRTVFMQSYIDEVVEPVGWREWNGDFALSTLYYAEYNNTGSGSSTTDRVVWPGYHVINS-TDANNFTVENFLLGDGWMVQSGVPYISGL 571          
BLAST of CX671641 vs. ExPASy Swiss-Prot
Match: PME20_ARATH (Probable pectinesterase/pectinesterase inhibitor 20 OS=Arabidopsis thaliana GN=PME20 PE=2 SV=2)

HSP 1 Score: 269.24 bits (687), Expect = 2.035e-71
Identity = 127/207 (61.35%), Postives = 150/207 (72.46%), Query Frame = -3
Query:  232 QAVALRVGADHAVVYRCNVIGYQDTLYVHSNRQFYRECDIYGTVDFIFGNAAVVLQKCAIYARKPMAMQKNTITAQNRKDPNQNTGISIHDCSLYAAPDLQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVRWPGYRVITSATEASKFTVSQFIYGSSWLPSTGVAFLGGL 852
            QAVALR G D +V Y C+   YQDTLY HS RQFYRECD+YGTVDFIFGNAAVVLQ C +Y R+P   Q N +TAQ R DPNQNTG +IH C++  A DL  S  ++ TYLGRPWK YSR V M TY+   ++P GW  W+GDFAL TLYY EY N+GPGS   +RV WPGY VI +AT+AS FTV+ F+ G  W+  TGV F+GGL
Sbjct:  353 QAVALRSGGDLSVFYSCSFEAYQDTLYTHSLRQFYRECDVYGTVDFIFGNAAVVLQNCNLYPRQPRKGQSNEVTAQGRTDPNQNTGTAIHGCTIRPADDLATSNYTVKTYLGRPWKEYSRTVVMQTYIDGFLEPSGWNAWSGDFALSTLYYAEYNNTGPGSDTTNRVTWPGYHVI-NATDASNFTVTNFLVGEGWIGQTGVPFVGGL 558          
BLAST of CX671641 vs. ExPASy Swiss-Prot
Match: PME47_ARATH (Probable pectinesterase/pectinesterase inhibitor 47 OS=Arabidopsis thaliana GN=PME47 PE=2 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 2.658e-71
Identity = 127/208 (61.06%), Postives = 150/208 (72.12%), Query Frame = -3
Query:  232 HQAVALRVGADHAVVYRCNVIGYQDTLYVHSNRQFYRECDIYGTVDFIFGNAAVVLQKCAIYARKPMAMQKNTITAQNRKDPNQNTGISIHDCSLYAAPDLQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVRWPGYRVITSATEASKFTVSQFIYGSSWLPSTGVAFLGGL 855
            HQAVA+R  AD +  YRC+  GYQDTLYVHS RQFYRECDIYGT+DFIFGNAA + Q C IYARKPMA QKN +TA  R DPNQ TGISI +C++ AAPDL A   S  T+LGRPWK YSR VY+ +Y+ D +QP GWLEWNG   LDT+ YGEY N GPG+    RV+W GY ++ +  +A  FTV  F  G +WLP T + F GGL
Sbjct:  414 HQAVAVRNNADGSTFYRCSFEGYQDTLYVHSLRQFYRECDIYGTIDFIFGNAAAIFQNCNIYARKPMANQKNAVTAHGRTDPNQKTGISIINCTIGAAPDLAADPKSTMTFLGRPWKPYSRTVYIQSYISDVVQPVGWLEWNGTTGLDTISYGEYDNFGPGADTSKRVQWSGYSLL-NLVQAMNFTVYNFTLGDTWLPQTDIPFYGGL 620          
BLAST of CX671641 vs. ExPASy Swiss-Prot
Match: PME7_ARATH (Probable pectinesterase/pectinesterase inhibitor 7 OS=Arabidopsis thaliana GN=PME7 PE=2 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 3.472e-71
Identity = 127/208 (61.06%), Postives = 150/208 (72.12%), Query Frame = -3
Query:  232 HQAVALRVGADHAVVYRCNVIGYQDTLYVHSNRQFYRECDIYGTVDFIFGNAAVVLQKCAIYARKPMAMQKNTITAQNRKDPNQNTGISIHDCSLYAAPDLQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVRWPGYRVITSATEASKFTVSQFIYGSSWLPSTGVAFLGGL 855
            HQAVALR GAD ++ Y C+   YQDTLY HS RQFYRECD+YGTVDFIFGNAAVV Q C +Y RKPM  Q N ITAQ R DPNQNTG SI +C++  A DL +S  ++ TYLGRPWK YSR VYM +Y+   ++P GW EWNGDFAL TLYY EY N+GPGS   +RV WPGY VI S T+A+ FTV+     + W+  TGV +  GL
Sbjct:  371 HQAVALRSGADFSIFYSCSFEAYQDTLYTHSLRQFYRECDVYGTVDFIFGNAAVVFQNCNLYPRKPMPNQFNAITAQGRSDPNQNTGTSIQNCTIKPADDLVSSNYTVKTYLGRPWKEYSRTVYMQSYIDGFVEPVGWREWNGDFALSTLYYAEYNNTGPGSNTTNRVTWPGYHVINS-TDAANFTVTGLFIEADWIWKTGVPYTSGL 577          
BLAST of CX671641 vs. ExPASy Swiss-Prot
Match: PME1_SOLLC (Pectinesterase 1 OS=Solanum lycopersicum GN=PME1.9 PE=1 SV=5)

HSP 1 Score: 268.47 bits (685), Expect = 3.472e-71
Identity = 127/207 (61.35%), Postives = 151/207 (72.95%), Query Frame = -3
Query:  232 QAVALRVGADHAVVYRCNVIGYQDTLYVHSNRQFYRECDIYGTVDFIFGNAAVVLQKCAIYARKPMAMQKNTITAQNRKDPNQNTGISIHDCSLYAAPDLQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVRWPGYRVITSATEASKFTVSQFIYGSSWLPSTGVAFLGGL 852
            QAVALRVGAD +V+ RC +  YQDTLY HS RQFYR+  + GTVDFIFGNAAVV QKC + ARKP   Q+N +TAQ R DPNQ TG SI  C++ A+ DL+      PTYLGRPWK YSR V M +Y+G  I P GW EW+GDFAL TLYYGE+MN+GPG+    RV+WPGY VIT   +A  FTV++ I G SWL STGVA++ GL
Sbjct:  338 QAVALRVGADMSVINRCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGNAAVVFQKCQLVARKPGKYQQNMVTAQGRTDPNQATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKEYSRTVVMESYLGGLINPAGWAEWDGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFTVAKLIQGGSWLRSTGVAYVDGL 544          
BLAST of CX671641 vs. ExPASy Swiss-Prot
Match: PME1_CITSI (Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE=2 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 1.723e-70
Identity = 131/208 (62.98%), Postives = 152/208 (73.08%), Query Frame = -3
Query:  232 HQAVALRVGADHAVVYRCNVIGYQDTLYVHSNRQFYRECDIYGTVDFIFGNAAVVLQKCAIYARKPMAMQKNTITAQNRKDPNQNTGISIHDCSLYAAPDLQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVRWPGYRVITSATEASKFTVSQFIYGSSWLPSTGVAFLGGL 855
            HQAVALRVGAD +  Y C+++ YQDTLYVHSNRQF+  C I GTVDFIFGNAA VLQ C I+ARKP + QKN +TAQ R DPNQNTGI I    + A  DL+  +GS PTYLGRPWK YSR V M + + D I P GW EW+G+FAL+TL+YGE+ NSG G+    RV+W G+RVITSATEA  FT   FI GSSWL STG  F  GL
Sbjct:  377 HQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL 584          
BLAST of CX671641 vs. ExPASy Swiss-Prot
Match: PME3_ARATH (Pectinesterase/pectinesterase inhibitor 3 OS=Arabidopsis thaliana GN=PME3 PE=2 SV=2)

HSP 1 Score: 265.774 bits (678), Expect = 2.250e-70
Identity = 127/208 (61.06%), Postives = 153/208 (73.56%), Query Frame = -3
Query:  232 HQAVALRVGADHAVVYRCNVIGYQDTLYVHSNRQFYRECDIYGTVDFIFGNAAVVLQKCAIYARKPMAMQKNTITAQNRKDPNQNTGISIHDCSLYAAPDLQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVRWPGYRVITSATEASKFTVSQFIYGSSWLPSTGVAFLGGL 855
            HQAVALRVG+D +  Y C+++ YQDTLYVHSNRQF+ +C I GTVDFIFGNAAVVLQ C I+AR+P + QKN +TAQ R DPNQNTGI I  C + A  DLQ+ KGS PTYLGRPWK YS+ V M + + D I+P GW EW G FAL+TL Y EY N+G G+   +RV+W G++VIT+A EA K+T  QFI G  WL STG  F  GL
Sbjct:  385 HQAVALRVGSDFSAFYNCDMLAYQDTLYVHSNRQFFVKCLIAGTVDFIFGNAAVVLQDCDIHARRPNSGQKNMVTAQGRTDPNQNTGIVIQKCRIGATSDLQSVKGSFPTYLGRPWKEYSQTVIMQSAISDVIRPEGWSEWTGTFALNTLTYREYSNTGAGAGTANRVKWRGFKVITAAAEAQKYTAGQFIGGGGWLSSTGFPFSLGL 592          
BLAST of CX671641 vs. ExPASy Swiss-Prot
Match: PME3_CITSI (Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 3.838e-70
Identity = 130/208 (62.50%), Postives = 152/208 (73.08%), Query Frame = -3
Query:  232 HQAVALRVGADHAVVYRCNVIGYQDTLYVHSNRQFYRECDIYGTVDFIFGNAAVVLQKCAIYARKPMAMQKNTITAQNRKDPNQNTGISIHDCSLYAAPDLQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVRWPGYRVITSATEASKFTVSQFIYGSSWLPSTGVAFLGGL 855
            HQAVALRVGAD +  Y C+++ YQDTLYVHSNRQF+  C I GTVDFIFGNAA VLQ C I+ARKP + QKN +TAQ R DPNQNTGI I    + A  DL+  +GS PTYLGRPWK YSR V M + + D I P GW EW+G+FAL+TL+YGE+ N+G G+    RV+W G+RVITSATEA  FT   FI GSSWL STG  F  GL
Sbjct:  377 HQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRADPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDVIHPAGWHEWDGNFALNTLFYGEHQNAGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL 584          
BLAST of CX671641 vs. ExPASy Swiss-Prot
Match: PME1_FICAW (Pectinesterase/pectinesterase inhibitor OS=Ficus awkeotsang PE=1 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 3.838e-70
Identity = 125/208 (60.10%), Postives = 151/208 (72.60%), Query Frame = -3
Query:  232 HQAVALRVGADHAVVYRCNVIGYQDTLYVHSNRQFYRECDIYGTVDFIFGNAAVVLQKCAIYARKPMAMQKNTITAQNRKDPNQNTGISIHDCSLYAAPDLQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVRWPGYRVITSATEASKFTVSQFIYGSSWLPSTGVAFLGGL 855
            +QAVALR+GAD  V+ RC +  YQDTLY H+ RQFYR+ +I GTVDFIFGNAAVV Q C +  RK M  Q+NTITAQ R DPNQNTG SI +C ++A+ DL+  + +  +YLGRPWK YSR V M +Y+ D I P GWLEW+ DFAL TL+YGEY N GPGS    RV+WPGY VITS   A +FTV++ I G SWL STGV +  GL
Sbjct:  336 YQAVALRIGADETVINRCRIDAYQDTLYPHNYRQFYRDRNITGTVDFIFGNAAVVFQNCNLIPRKQMKGQENTITAQGRTDPNQNTGTSIQNCEIFASADLEPVEDTFKSYLGRPWKEYSRTVVMESYISDVIDPAGWLEWDRDFALKTLFYGEYRNGGPGSGTSERVKWPGYHVITSPEVAEQFTVAELIQGGSWLGSTGVDYTAGL 543          
The following BLAST results are available for this feature:
BLAST of CX671641 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
PME17_ARATH5.356e-7262.80Probable pectinesterase/pectinesterase inhibitor 1... [more]
PME41_ARATH1.558e-7160.58Probable pectinesterase/pectinesterase inhibitor 4... [more]
PME20_ARATH2.035e-7161.35Probable pectinesterase/pectinesterase inhibitor 2... [more]
PME47_ARATH2.658e-7161.06Probable pectinesterase/pectinesterase inhibitor 4... [more]
PME7_ARATH3.472e-7161.06Probable pectinesterase/pectinesterase inhibitor 7... [more]
PME1_SOLLC3.472e-7161.35Pectinesterase 1 OS=Solanum lycopersicum GN=PME1.9... [more]
PME1_CITSI1.723e-7062.98Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE... [more]
PME3_ARATH2.250e-7061.06Pectinesterase/pectinesterase inhibitor 3 OS=Arabi... [more]
PME3_CITSI3.838e-7062.50Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1[more]
PME1_FICAW3.838e-7060.10Pectinesterase/pectinesterase inhibitor OS=Ficus a... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_12C08_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12C08-F16-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671641 ID=CX671641; Name=CX671641; organism=Citrus sinensis; type=EST; length=857bp
TTTTTTTAAAGACCGTCACAAATATTATTACTTATTACAACATCAAGACG
AAAAAAATGAAACCAGAAAATTATACAATTGCGAAAGAAATATTTAGAAT
TTAACCTCCCCGTGTGTGTGTGTGCATGCAGTAAGTAAAATTCCATTTGA
TCCTTCCAACACTCATGAGACCCACCTATATATAATAAGTATACGTACTA
AAAAGTTAAATTAAAATTCACTTTAAACCGAAAGCCCACCCAAGAAAGCC
ACCCCAGTCGACGGCAGCCACGACGACCCGTAGATAAACTGCGACACAGT
GAATTTACTTGCCTCCGTCGCCGACGTTATAACCCGGTAACCCGGCCACC
TCACCCGGTGCCCCACGGCCGAACCCGGGCCGGAGTTCATGTACTCGCCG
TAGTATAAAGTATCCAGTGCAAAGTCTCCATTCCATTCAAGCCAGCCTCT
GGGTTGGATGTGGTCACCCATGTACGTTAACATGTACACAACCCTCGAGT
AGAGCTTCCACGGCCGGCCTAGGTACGTGGGGATGCTGCCTTTCGAGGCC
TGAAGATCGGGGGCGGCGTAGAGGCTGCAGTCGTGGATTGAGATGCCCGT
GTTCTGATTAGGGTCTTTCCTGTTCTGCGCCGTGATGGTGTTCTTCTGCA
TGGCCATCGGCTTGCGAGCGTAGATGGCGCACTTCTGTAAGACCACGGCG
GCGTTCCCGAAGATGAAGTCCACGGTGCCGTAGATGTCGCACTCGCGGTA
GAACTGCCGGTTTGAGTGCACGTAGAGGGTGTCTTGGTAACCGATTACGT
TGCAGCGGTACACCACCGCGTGGTCGGCGCCGACCCGGAGGGCCACCGCT
TGGTGCT
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