CX671641

Overview
NameCX671641
Unique NameCX671641
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length857
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX671641_ssr112 microsatellite CX671641_ssr112:112..123. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5079 contig Csv1_Contig5079:1..857. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671641 vs. ExPASy Swiss-Prot
Match: PME52_ARATH (Putative pectinesterase 52 OS=Arabidopsis thaliana GN=PME52 PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 1.172e-18
Identity = 60/198 (30.30%), Postives = 90/198 (45.45%), Query Frame = -3
Query:  265 AVALRVGADHAVVYRCNVIGYQDTLYVHSNRQFYRECDIYGTVDFIFGNAAVVLQKCAIYARKPMAMQK---NTITAQNRKDPNQNTGISIHDCSLYAAPDLQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVRWPGYRVITSATEASKFTVSQFIYGSSWL 849
            AVA+ V  D +  Y C+ +G QDT++ +  R  ++ C I G +DFIFG+   V + C I A       K     ITAQ R   +  +G      S+          GS   YLGR +  +SRV+++ T +   + P GW  W+      +  Y E    G GS +  RV W     + S     +F++S FI    W+
Sbjct:  101 AVAISVYGDKSAFYNCDFLGLQDTVWDNLGRHHFKNCYIEGAIDFIFGSGQSVYEDCHINATAGALASKVSFGYITAQGRSSDSDPSGFVFLRGSV---------SGSTSVYLGRAYGPFSRVIFIQTDLSSVVHPEGWYSWHYGGYEMSFTYAEVECKGAGSDMSRRVPW--IDKLHSFYTKQQFSISNFIDQDQWI 287          
BLAST of CX671641 vs. ExPASy Swiss-Prot
Match: PME_ASPAC (Pectinesterase OS=Aspergillus aculeatus GN=pme1 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.410e-18
Identity = 61/164 (37.20%), Postives = 80/164 (48.78%), Query Frame = -3
Query:  370 HQAVALRVGADHAVVYRCNVIGYQDTLYVHSNRQFYRECDIYGTVDFIFG-NAAVVLQKCAIYARKPMAMQKNTITAQNRKDPNQNTGISIHDCSLYAAPDLQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFA-LDTLYYGEYMNSGPGS 855
            HQA+AL   AD    Y CN  GYQDTL   +  Q Y    I G VDFIFG +A    Q   I  R        +ITA  R      +   I+  ++ A      ++G+   YLGRPW  Y+RVV+  T M + I   GW EW+      + + +GEY N+G GS
Sbjct:  138 HQALALSAWADQQGYYGCNFTGYQDTLLAQTGNQLYINSYIEGAVDFIFGQHARAWFQNVDI--RVVEGPTSASITANGRSSETDTSYYVINKSTVAAKEGDDVAEGTY--YLGRPWSEYARVVFQQTSMTNVINSLGWTEWSTSTPNTEYVTFGEYANTGAGS 297          
BLAST of CX671641 vs. ExPASy Swiss-Prot
Match: PME_ASPTU (Pectinesterase OS=Aspergillus tubingensis GN=pme1 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.453e-18
Identity = 67/198 (33.84%), Postives = 91/198 (45.96%), Query Frame = -3
Query:  268 HQAVALRVGADHAVVYRCNVIGYQDTLYVHSNRQFYRECDIYGTVDFIFG-NAAVVLQKCAIYARKPMAMQKNTITAQNRKDPNQNTGISIHDCSLYAAPDLQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFA-LDTLYYGEYMNSGPGSAVGHRVRWPGYRVITSATEASKFTVSQFIYGSSW 855
            HQA+A+   A     Y C   GYQDTL   +  Q Y    I G VDFIFG +A     +C I  R        +ITA  R   + ++   IH  ++ AA     S G+   YLGRPW  Y+RV +  T M D I   GW EW+      + + + EY N+G G+         G R   S+      T+S ++ GS W
Sbjct:  137 HQALAVSAYASEQGYYACQFTGYQDTLLAETGYQVYAGTYIEGAVDFIFGQHARAWFHECDI--RVLEGPSSASITANGRSSESDDSYYVIHKSTVAAADGNDVSSGTY--YLGRPWSQYARVCFQKTSMTDVINHLGWTEWSTSTPNTENVTFVEYGNTGTGA--------EGPRANFSSELTEPITIS-WLLGSDW 321          
BLAST of CX671641 vs. ExPASy Swiss-Prot
Match: PME66_ARATH (Probable pectinesterase 66 OS=Arabidopsis thaliana GN=PME66 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 7.110e-16
Identity = 59/198 (29.80%), Postives = 85/198 (42.93%), Query Frame = -3
Query:  265 AVALRVGADHAVVYRCNVIGYQDTLYVHSNRQFYRECDIYGTVDFIFGNAAVVLQKCAIYARKPMAMQKN---TITAQNRKDPNQNTGISIHDCSLYAAPDLQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVRWPGYRVITSATEASKFTVSQFIYGSSWL 849
            AVA R+  D  VV   + +G QDTL+    R +Y+ C I G +DFIFG    + ++C +     +    N   TITA  R  P+   G    DC++          G   T LGR W   +RV++  + + D + P GW  W        L + E   +G G+    RV W       S +E   F    FI    W+
Sbjct:  142 AVAARMLGDRYVVTDSSFVGLQDTLFDGKGRHYYKRCIISGGIDFIFGYGQSLFKECTLNMTLGIYAPDNPYGTITAHQRPSPSDEGGFVFSDCTV---------TGVGKTLLGRAWGSNARVIFDRSRLSDVVLPIGWDAWRAKGNERDLTFVEAGCTGAGADTSQRVPW---LKKLSLSEVDGFASVSFIDQDGWI 327          
BLAST of CX671641 vs. ExPASy Swiss-Prot
Match: PMEA_ERWCH (Pectinesterase A OS=Erwinia chrysanthemi GN=pemA PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.639e-12
Identity = 65/225 (28.89%), Postives = 103/225 (45.78%), Query Frame = -3
Query:  259 QAVALRV--GADHAVVYRCNVIGYQDTLYVHSNRQFYRECDIYGTVDFIFGNAAVVLQKCAIYARKPMAMQKNTIT---AQNRKDPNQNTGISIHDCSLYAAPDLQASKGSIPTYLGRPW--------------KLYSRVVYMLTYMGDHIQPRGWLEWNG-DFALDTLYYG-------EYMNSGPGSAVGHRVRWPGYRVITSATEASKFTVSQFIYGSSWLPS 852
            QAVAL V    D A     +++GYQDTLYV   R F+ +C I GTVDFIFG+   +   C + +R    ++   ++        + NQ  G+ I +  +    D   +K      LGRPW                  + V++ T M +HI   GW + +G D   +T+++        EY + G G+AV         R +T A +A+++T S+ +    W P+
Sbjct:  153 QAVALYVTKSGDRAYFKDVSLVGYQDTLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNCDLVSRYRADVKSGNVSGYLTAPSTNINQKYGLVITNSRVIRESDSVPAKS---YGLGRPWHPTTTFSDGRYADPNAIGQTVFLNTSMDNHIY--GWDKMSGKDKNGNTIWFNPEDSRFFEYKSYGAGAAVS-----KDRRQLTDA-QAAEYTQSKVL--GDWTPT 364          
BLAST of CX671641 vs. ExPASy Swiss-Prot
Match: PMEA_DICD3 (Pectinesterase A OS=Dickeya dadantii (strain 3937) GN=pemA PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.769e-12
Identity = 64/225 (28.44%), Postives = 102/225 (45.33%), Query Frame = -3
Query:  259 QAVALRV--GADHAVVYRCNVIGYQDTLYVHSNRQFYRECDIYGTVDFIFGNAAVVLQKCAIYARKPMAMQKNTIT---AQNRKDPNQNTGISIHDCSLYAAPDLQASKGSIPTYLGRPW--------------KLYSRVVYMLTYMGDHIQPRGWLEWNG-DFALDTLYYG-------EYMNSGPGSAVGHRVRWPGYRVITSATEASKFTVSQFIYGSSWLPS 852
            QAVAL V    D A     +++GYQDTLYV   R F+ +C I GTVDFIFG+   +   C + +R    ++   ++        + NQ  G+ I +  +    D   +K      LGRPW                  + V++ T M +HI   GW + +G D   +T+++        EY + G G+ V         R +T A +A+++T S+ +    W P+
Sbjct:  153 QAVALYVTKSGDRAYFKDVSLVGYQDTLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNCDLVSRYRADVKSGNVSGYLTAPSTNINQKYGLVITNSRVIRESDSVPAKS---YGLGRPWHPTTTFSDGRYADPNAIGQTVFLNTSMDNHIY--GWDKMSGKDKNGNTIWFNPEDSRFFEYKSYGAGATVS-----KDRRQLTDA-QAAEYTQSKVL--GDWTPT 364          
BLAST of CX671641 vs. ExPASy Swiss-Prot
Match: PME57_ARATH (Putative pectinesterase 57 OS=Arabidopsis thaliana GN=PME57 PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.812e-11
Identity = 34/58 (58.62%), Postives = 38/58 (65.52%), Query Frame = -3
Query:  673 VALRVGADHAVVYRCNVIGYQDTLYVHSNRQFYRECDIYGTVDFIFGNAAVVLQKCAI 846
            V LRV  D +++YRC V  YQD LY H NRQ YRE  +  TVDFI GNAA V Q C I
Sbjct:  184 VTLRVNGDMSIIYRCRVEEYQDALYPHKNRQCYREYFLMDTVDFICGNAAAVFQFCQI 241          
The following BLAST results are available for this feature:
BLAST of CX671641 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
PME52_ARATH1.172e-1830.30Putative pectinesterase 52 OS=Arabidopsis thaliana... [more]
PME_ASPAC3.410e-1837.20Pectinesterase OS=Aspergillus aculeatus GN=pme1 PE... [more]
PME_ASPTU4.453e-1833.84Pectinesterase OS=Aspergillus tubingensis GN=pme1 ... [more]
PME66_ARATH7.110e-1629.80Probable pectinesterase 66 OS=Arabidopsis thaliana... [more]
PMEA_ERWCH1.639e-1228.89Pectinesterase A OS=Erwinia chrysanthemi GN=pemA P... [more]
PMEA_DICD34.769e-1228.44Pectinesterase A OS=Dickeya dadantii (strain 3937)... [more]
PME57_ARATH1.812e-1158.62Putative pectinesterase 57 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_12C08_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12C08-F16-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671641 ID=CX671641; Name=CX671641; organism=Citrus sinensis; type=EST; length=857bp
TTTTTTTAAAGACCGTCACAAATATTATTACTTATTACAACATCAAGACG
AAAAAAATGAAACCAGAAAATTATACAATTGCGAAAGAAATATTTAGAAT
TTAACCTCCCCGTGTGTGTGTGTGCATGCAGTAAGTAAAATTCCATTTGA
TCCTTCCAACACTCATGAGACCCACCTATATATAATAAGTATACGTACTA
AAAAGTTAAATTAAAATTCACTTTAAACCGAAAGCCCACCCAAGAAAGCC
ACCCCAGTCGACGGCAGCCACGACGACCCGTAGATAAACTGCGACACAGT
GAATTTACTTGCCTCCGTCGCCGACGTTATAACCCGGTAACCCGGCCACC
TCACCCGGTGCCCCACGGCCGAACCCGGGCCGGAGTTCATGTACTCGCCG
TAGTATAAAGTATCCAGTGCAAAGTCTCCATTCCATTCAAGCCAGCCTCT
GGGTTGGATGTGGTCACCCATGTACGTTAACATGTACACAACCCTCGAGT
AGAGCTTCCACGGCCGGCCTAGGTACGTGGGGATGCTGCCTTTCGAGGCC
TGAAGATCGGGGGCGGCGTAGAGGCTGCAGTCGTGGATTGAGATGCCCGT
GTTCTGATTAGGGTCTTTCCTGTTCTGCGCCGTGATGGTGTTCTTCTGCA
TGGCCATCGGCTTGCGAGCGTAGATGGCGCACTTCTGTAAGACCACGGCG
GCGTTCCCGAAGATGAAGTCCACGGTGCCGTAGATGTCGCACTCGCGGTA
GAACTGCCGGTTTGAGTGCACGTAGAGGGTGTCTTGGTAACCGATTACGT
TGCAGCGGTACACCACCGCGTGGTCGGCGCCGACCCGGAGGGCCACCGCT
TGGTGCT
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