CX671626

Overview
NameCX671626
Unique NameCX671626
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length815
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX671626_ssr15 microsatellite CX671626_ssr15:15..26. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8493 contig Csv1_Contig8493:112..926. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671626 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.189e-19
Identity = 65/178 (36.52%), Postives = 92/178 (51.69%), Query Frame = 3
Query:  321 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-GLDLEDKL------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 815
            P+YLTG + GD G+DP GL++ P++   +   EL++ RWAMLG AG ++PE F K G    PE  W+       D     YF  +  + ++  ++   V +    +  I N G   +D +            +PGG F+PL  A  P Q A  K KE+ NGRLAM A LGF +Q  VT
Sbjct:   64 PDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPE--WY-------DAGKEQYFASSSTLFVIEFILFHYVEI--RRWQDIKNPGSVNQDPIFKQYSLPKGEVGYPGGIFNPLNFA--PTQEA--KEKELANGRLAMLAFLGFVVQHNVT 226          
BLAST of CX671626 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 8.318e-19
Identity = 61/178 (34.27%), Postives = 88/178 (49.44%), Query Frame = 3
Query:  321 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITN-------------GLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 815
            P YLTG +PGD G+DP GL++ P++   +   EL++ RWAMLG AG ++PE F   G    P+  W+  G          YF  +  + ++  +++  V +    +  I N              L   +  +PGG F+PL  A   +     K KEI NGRLAM A LGF +Q  VT
Sbjct:   63 PGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPK--WYAAG-------KEEYFASSSTLFVIEFILSHYVEI--RRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGIFNPLNFAPTLE----AKEKEIANGRLAMLAFLGFIIQHNVT 225          
BLAST of CX671626 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.128e-18
Identity = 46/71 (64.79%), Postives = 56/71 (78.87%), Query Frame = 3
Query:  609 EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 815
            ++VL+G  E YRI  G   ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VT
Sbjct:  166 QVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVT 236          
BLAST of CX671626 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.128e-18
Identity = 46/71 (64.79%), Postives = 56/71 (78.87%), Query Frame = 3
Query:  609 EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 815
            ++VL+G  E YRI  G   ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VT
Sbjct:  166 QVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVT 236          
BLAST of CX671626 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.128e-18
Identity = 46/71 (64.79%), Postives = 56/71 (78.87%), Query Frame = 3
Query:  609 EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 815
            ++VL+G  E YRI  G   ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VT
Sbjct:   15 QVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVT 85          
BLAST of CX671626 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.128e-18
Identity = 46/71 (64.79%), Postives = 56/71 (78.87%), Query Frame = 3
Query:  609 EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 815
            ++VL+G  E YRI  G   ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VT
Sbjct:  164 QVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVT 234          
BLAST of CX671626 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.128e-18
Identity = 46/71 (64.79%), Postives = 56/71 (78.87%), Query Frame = 3
Query:  609 EIVLVGGAEYYRITNGL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 815
            ++VL+G  E YRI  G   ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VT
Sbjct:  164 QVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVT 234          
BLAST of CX671626 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.961e-17
Identity = 48/83 (57.83%), Postives = 58/83 (69.88%), Query Frame = 3
Query:  585 NLVFAVIAEIVLVGGAEYYRITN------GLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 815
            +L+  +  +++L+G  E YR  N      G DL D+L+PGGPFDPLGLA DPD F  LKVKEIKNGRLAM  MLGF+ QA VT
Sbjct:   10 SLLAILATQVLLMGAVEGYRAGNTAPGQFGEDL-DRLYPGGPFDPLGLADDPDTFPELKVKEIKNGRLAMSGMLGFYAQAIVT 91          
BLAST of CX671626 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.504e-15
Identity = 42/72 (58.33%), Postives = 51/72 (70.83%), Query Frame = 3
Query:  609 EIVLVGGAEYYRITNGLDL---EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 815
            +++L+G  E YR+     L   ED L+PGG FDPL    DP+ FA LKVKEIKNGRLAMF+M GFF+QA VT
Sbjct:   22 QVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVT 93          
BLAST of CX671626 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.243e-14
Identity = 60/170 (35.29%), Postives = 81/170 (47.65%), Query Frame = 3
Query:  321 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYR-----ITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 815
            P YLTGE  GD G+DP GL+  P  F + Q  E+ H R +ML   G ++PE              WF+    + D    N           FAV+A + +V   EY+R     + N  +  D+ +PG  FDPL L  +       K  EIKNGRLAM  M G  +Q++VT
Sbjct:  381 PRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELLG--------NGAWFQ----IWDKVDFNR----------FAVVA-LQVVAPLEYWRGNGGFLWNDEETVDQSYPG--FDPLNLTTE-----YTKEAEIKNGRLAMNGMFGLEVQSHVT 520          

HSP 2 Score: 78.5666 bits (192), Expect = 4.723e-14
Identity = 55/172 (31.98%), Postives = 78/172 (45.35%), Query Frame = 3
Query:  312 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLE----DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 815
            +E P  LTGE P D G+DP  L+  PD +++ +  E+ H R AML   G I+PE   K          WF+ G   +DG  L +                + +    EY+R   G + +    D+ +PG  FDPL L  D       +  E+KNGRLA+ A+ G   Q   T
Sbjct:  194 AEPPALLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGCIVPELLGK--------GAWFEAGD-SVDGLKLGFI--------------TMAIAAPTEYWRGQGGFNWQKGELDRSYPG--FDPLNLTTD-----YTRAAEVKNGRLALTAVAGLTAQYLAT 335          
The following BLAST results are available for this feature:
BLAST of CX671626 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
CB24_ARATH2.189e-1936.52Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB24_PEA8.318e-1934.27Chlorophyll a-b binding protein P4, chloroplastic ... [more]
CB2F_SOLLC4.128e-1864.79Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC4.128e-1864.79Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB2D_SOLLC4.128e-1864.79Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC4.128e-1864.79Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC4.128e-1864.79Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB21_EUGGR5.961e-1757.83Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB21_RAPSA2.504e-1558.33Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
LH18_EUGGR1.243e-1435.29Light-harvesting complex I LH38 proteins (Fragment... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_12B12_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12B12-D24-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671626 ID=CX671626; Name=CX671626; organism=Citrus sinensis; type=EST; length=815bp
CTCTAACACAAAGAAGCAGCAGCAGCAACACTCTGAAGATGGCTTCATTG
GCAGCATCGTCCACTCCTGCTGCCTCCATTGGAGTTAAGGAGATGCTTGG
CAACCCTCTCAATGTCAGCAGTGCTGTTAGGACTTCAGCTCCAGGTGCAT
CAAACCCTTCTACTTTCAAGCCCGTTGCTCTCTTCTCCAAGAAGAAAGCC
GCCCCTCCTGCCAAGTCTAAGCCCGTCGCCGTCTCCCCCGTTAACGAAGA
GCTCGCCAAGTGGTATGGTCCTGACCGAAGAATTTTCTTGCCCGAGGGTC
TCTTGGACAGATCTGAGATCCCTGAGTACTTGACCGGAGAAGTTCCCGGA
GACTATGGTTACGATCCTTTTGGTCTCAGCAAGAAACCAGACGACTTCAG
CAAATATCAGGCATATGAATTGATTCATGCCAGATGGGCCATGCTTGGTG
CTGCTGGTTTCATCATTCCTGAAGCCTTTAACAAGTTTGGTGCTAACTGT
GGTCCTGAAGCTGTCTGGTTCAAGACTGGAGCTCTACTTCTTGATGGAAA
CACATTGAACTACTTCGGAAAGAACATCCCAATCAACCTTGTTTTTGCTG
TCATTGCTGAGATTGTTCTTGTAGGTGGTGCTGAATATTATAGAATCACC
AACGGTTTGGATTTGGAGGACAAGCTTCACCCAGGTGGTCCATTTGACCC
ACTGGGATTAGCAAAGGATCCTGACCAATTTGCATTGCTAAAAGTGAAGG
AGATCAAGAATGGAAGACTTGCAATGTTTGCCATGCTTGGTTTCTTTCTC
CAAGCTTATGTCACA
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