CX671626

Overview
NameCX671626
Unique NameCX671626
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length815
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX671626_ssr15 microsatellite CX671626_ssr15:15..26. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8493 contig Csv1_Contig8493:112..926. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX671626 vs. ExPASy Swiss-Prot
Match: LH15_EUGGR (Light-harvesting complex I LH35 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.723e-14
Identity = 57/169 (33.73%), Postives = 81/169 (47.93%), Query Frame = 3 
Query:  321 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLE----DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 815
            P +LTGE P D G+DP  ++  P  +++ +  E+ HAR +ML   G I+PE   K          WF+ G   +DG           I L F ++A   +    EY+R   G + +    D+ +PG  FDPL L  D  +      +EIKNGRLAM  +LG   Q   T
Sbjct:  169 PAHLTGEYPADRGFDPLSVAADPTVYARMRVSEVFHARLSMLAIVGSIVPELLGK--------GAWFEVGN-SVDG-----------IKLGFILMA---IAAPTEYWRGNGGFNWDKGTADRSYPG--FDPLKLTTDYTK------REIKNGRLAMTGLLGLTFQYLAT 306
The following BLAST results are available for this feature:
BLAST of CX671626 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
LH15_EUGGR4.723e-1433.73Light-harvesting complex I LH35 proteins (Fragment... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_12B12_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12B12-D24-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671626 ID=CX671626; Name=CX671626; organism=Citrus sinensis; type=EST; length=815bp
CTCTAACACAAAGAAGCAGCAGCAGCAACACTCTGAAGATGGCTTCATTG
GCAGCATCGTCCACTCCTGCTGCCTCCATTGGAGTTAAGGAGATGCTTGG
CAACCCTCTCAATGTCAGCAGTGCTGTTAGGACTTCAGCTCCAGGTGCAT
CAAACCCTTCTACTTTCAAGCCCGTTGCTCTCTTCTCCAAGAAGAAAGCC
GCCCCTCCTGCCAAGTCTAAGCCCGTCGCCGTCTCCCCCGTTAACGAAGA
GCTCGCCAAGTGGTATGGTCCTGACCGAAGAATTTTCTTGCCCGAGGGTC
TCTTGGACAGATCTGAGATCCCTGAGTACTTGACCGGAGAAGTTCCCGGA
GACTATGGTTACGATCCTTTTGGTCTCAGCAAGAAACCAGACGACTTCAG
CAAATATCAGGCATATGAATTGATTCATGCCAGATGGGCCATGCTTGGTG
CTGCTGGTTTCATCATTCCTGAAGCCTTTAACAAGTTTGGTGCTAACTGT
GGTCCTGAAGCTGTCTGGTTCAAGACTGGAGCTCTACTTCTTGATGGAAA
CACATTGAACTACTTCGGAAAGAACATCCCAATCAACCTTGTTTTTGCTG
TCATTGCTGAGATTGTTCTTGTAGGTGGTGCTGAATATTATAGAATCACC
AACGGTTTGGATTTGGAGGACAAGCTTCACCCAGGTGGTCCATTTGACCC
ACTGGGATTAGCAAAGGATCCTGACCAATTTGCATTGCTAAAAGTGAAGG
AGATCAAGAATGGAAGACTTGCAATGTTTGCCATGCTTGGTTTCTTTCTC
CAAGCTTATGTCACA
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