CX671622

Overview
NameCX671622
Unique NameCX671622
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length720
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig830 contig Csv1_Contig830:62..781. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671622 vs. ExPASy Swiss-Prot
Match: CY1_RHORU (Cytochrome c1 OS=Rhodospirillum rubrum GN=petC PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.306e-34
Identity = 71/161 (44.10%), Postives = 102/161 (63.35%), Query Frame = 3
Query:  237 ALLGAGVSGFLSFATIASADEAEHGLACPSYPWPHKGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLVGVAYTEEETKAMAAEIEVVDGPNDEGEMFTRPGKLSDRFPQPYSNEQAARFANGGAYPPDLSLITKARHDGQNYVFALLTGYRDPPAG 719
            AL+ AG+   L+    A A+E   G++     W  KGI   YD   ++RG QV+ +VC++CH M  ++YR+L  + ++E+  K +AAE E   GP+D G+MFTRPG  +D  P P++N++AA  ANGGA PPDLSL+ KAR  G NY+++LL GY     G
Sbjct:    8 ALVAAGM--VLAIGGAAQANEG--GVSLHKQDWSWKGIFGRYDQPQLQRGFQVFHEVCSTCHGMKRVAYRNLSALGFSEDGIKELAAEKEFPAGPDDNGDMFTRPGTPADHIPSPFANDKAAAAANGGAAPPDLSLLAKARPGGPNYIYSLLEGYASDSPG 164          
BLAST of CX671622 vs. ExPASy Swiss-Prot
Match: CY1_EUGGR (Cytochrome c1, heme protein OS=Euglena gracilis PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.799e-33
Identity = 71/133 (53.38%), Postives = 86/133 (64.66%), Query Frame = 3
Query:  321 PSYPWPHKGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLVGVAYTEEETKAMAAEIEVVDGPNDEGEMFTRPGKLSDRFPQPYSNEQAARFANGGAYPPDLSLITKARHDGQNYVFALLTGYRDPPAG 719
            P+ PWPH       D  S+RRG +VY+QV A CHS+S I YR       ++EE K MAA  EV D P+++GE   RPGK  D   QPY NEQ AR+AN GA PPDLS+IT ARH G +Y++ALLTGY  P  G
Sbjct:    7 PALPWPHFQWFQGLDWRSVRRGKEVYEQVFAPCHSLSFIKYRHFEAFM-SKEEVKNMAASFEVDDDPDEKGEARKRPGKRFDTVVQPYKNEQEARYANNGALPPDLSVITNARHGGVDYIYALLTGYGRPVPG 138          
BLAST of CX671622 vs. ExPASy Swiss-Prot
Match: CYBC_BRAJA (Cytochrome b/c1 OS=Bradyrhizobium japonicum GN=fbcH PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.469e-31
Identity = 73/165 (44.24%), Postives = 102/165 (61.82%), Query Frame = 3
Query:  231 AFALLGAGVSGFLSFATIASADEAEHGLACPSYPWPHKGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLV---GVAYTEEETKAMAAEIEVVDGPNDEGEMFTRPGKLSDRFPQPYSNEQAARFANGGAYPPDLSLITKARHDGQN---YVFALLTGYRD 707
            A AL+ AG   FL     A A+E       P   W   G    +D  +++RG +VY++VCASCH +S I++R+L    G +Y+  +  A A++ ++ DGPND G+MF RPG+ +D FP P+ NEQAAR ANGGA PPDLSLITKAR  G+    ++F   T Y++
Sbjct:  415 AIALVAAGAL-FLGSLQDARANEGSD--KPPGNKWSFAGPFGKFDRGALQRGLKVYKEVCASCHGLSYIAFRNLAEAGGPSYSVAQVAAFASDYKIKDGPNDAGDMFERPGRPADYFPSPFPNEQAARAANGGAAPPDLSLITKARSYGRGFPWFIFDFFTQYQE 576          
BLAST of CX671622 vs. ExPASy Swiss-Prot
Match: CY1_RHOVI (Cytochrome c1 OS=Rhodopseudomonas viridis GN=petC PE=4 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.882e-21
Identity = 60/149 (40.27%), Postives = 78/149 (52.35%), Query Frame = 3
Query:  333 WPHKGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLVGVA---YTEEETKAMAAEIEV-VDGPNDEGEMFTRPGKLSDRFPQPYSNEQAARFANGGAYPPDLSLITKAR------------------HDGQNYVFALLTGYRDPP 713
            W   G    YD A +RRG QV+Q VC SCH++    +R+L   A   +  +E + +AA   V V   ND+G+   R  KL DR P  Y+NE AAR  + GA PPDLS+I KAR                   +G +Y+ ALL GY DPP
Sbjct:   37 WSFAGPFGQYDKAQLRRGFQVFQNVCVSCHTLENGGFRNLPSRAAPNWPLDEVRQLAASWPVQVKDINDKGDPMQRAPKLPDRIPSQYANEAAARIIHNGAVPPDLSVIAKARTFQRGFPWWVTDIFTQYNENGVDYIVALLNGYEDPP 185          
The following BLAST results are available for this feature:
BLAST of CX671622 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
CY1_RHORU3.306e-3444.10Cytochrome c1 OS=Rhodospirillum rubrum GN=petC PE=... [more]
CY1_EUGGR2.799e-3353.38Cytochrome c1, heme protein OS=Euglena gracilis PE... [more]
CYBC_BRAJA4.469e-3144.24Cytochrome b/c1 OS=Bradyrhizobium japonicum GN=fbc... [more]
CY1_RHOVI1.882e-2140.27Cytochrome c1 OS=Rhodopseudomonas viridis GN=petC ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_12B10_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12B10-D20-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671622 ID=CX671622; Name=CX671622; organism=Citrus sinensis; type=EST; length=720bp
AGTGCGCCCTCATCGTTGACCACAGGCTCTCCGGTCGAGCAGCTTTGCTC
ATCTCATCATCTCTGAACTAATTGATAGAGATATTAGCTGAAATGGTTGG
AGGAGGAGTTATCCACCAGCTCCTGAGAAAGAGACTTCAGTCTCAGTCCA
CTGGCTTACCAGTGTTATCCTTTTTTACGTCAAAGAAAATTCATGAAGAT
GCTGGATCTGTTGGTATGAAGTCCCTAAGGGCATTTGCGCTCCTTGGAGC
CGGTGTTTCAGGGTTTTTAAGTTTCGCAACAATAGCTTCTGCTGATGAAG
CTGAACATGGGTTGGCATGTCCCAGTTATCCTTGGCCTCACAAAGGCATT
CTCAGTTCTTACGACCATGCCTCGATTCGCCGTGGTCACCAGGTCTACCA
GCAAGTCTGTGCATCCTGCCATTCTATGTCACTAATATCATACCGTGATT
TGGTGGGTGTCGCATATACTGAAGAGGAGACAAAGGCAATGGCTGCTGAG
ATTGAGGTCGTTGATGGACCTAACGATGAGGGTGAGATGTTCACCCGTCC
AGGTAAACTCAGCGATCGTTTTCCTCAGCCATATTCCAATGAACAGGCAG
CAAGGTTTGCTAATGGAGGGGCATATCCTCCAGATTTAAGTCTTATTACC
AAAGCTCGTCATGATGGTCAGAATTATGTGTTTGCTCTTCTAACTGGTTA
TCGTGATCCTCCTGCTGGTG
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