CX671621

Overview
NameCX671621
Unique NameCX671621
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length762
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11033 contig Csv1_Contig11033:274..1035. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671621 vs. ExPASy Swiss-Prot
Match: CY1_EUGGR (Cytochrome c1, heme protein OS=Euglena gracilis PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.635e-32
Identity = 69/136 (50.74%), Postives = 87/136 (63.97%), Query Frame = -3
Query:  353 GAYPPDLSLITKARHDGQNYVFALLTGYRDP-PAGVSIREGLHYNPYFPGGAIAMPKMLIDGALEYEDGTPATEAQMGKDVVTFLSWAAEPEMEERKLMGFKWIFVLSLALLQAGYYRRLRWSVLKSRKLVLDVVN 757
            GA PPDLS+IT ARH G +Y++ALLTGY  P P GV +     YNPYF GG I MP  L D  +EYEDGTPA+  QM KDV  FL W + P  +ERKL+G+K I  L++  + +GYY R    + +SR+L     N
Sbjct:  105 GALPPDLSVITNARHGGVDYIYALLTGYGRPVPGGVQLSTTQWYNPYFHGGIIGMPPPLTDDMIEYEDGTPASVPQMAKDVTCFLEWCSNPWWDERKLLGYKTIATLAVIAVSSGYYNRFLSGLWRSRRLAFRPFN 240          
BLAST of CX671621 vs. ExPASy Swiss-Prot
Match: CYBC_BRAJA (Cytochrome b/c1 OS=Bradyrhizobium japonicum GN=fbcH PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.160e-26
Identity = 67/138 (48.55%), Postives = 82/138 (59.42%), Query Frame = -3
Query:  404 GGAYPPDLSLITKAR------------------HDGQNYVFALLTGYRDP-PAGVSIREGLHYNPYFPGGAIAMPKMLIDGALEYEDGTPATEAQMGKDVVTFLSWAAEPEMEERKLMGFKWIFVLSLALLQAGYYRR 760
            GGA PPDLSLITKAR                    G +YV A+L G+ +  P GV+I EG +YN YFPG AI MPK L DG + Y+DG+PAT AQ  KDV TFL W AEP ME RK +GF+ +FV  +      Y+ +
Sbjct:  543 GGAAPPDLSLITKARSYGRGFPWFIFDFFTQYQEQGPDYVSAVLQGFEEKVPEGVTIPEGSYYNKYFPGHAIKMPKPLSDGQVTYDDGSPATVAQYSKDVTTFLMWTAEPHMEARKRLGFQ-VFVFLIIFAGLMYFTK 679          
BLAST of CX671621 vs. ExPASy Swiss-Prot
Match: CY1_RHORU (Cytochrome c1 OS=Rhodospirillum rubrum GN=petC PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.022e-24
Identity = 57/125 (45.60%), Postives = 76/125 (60.80%), Query Frame = -3
Query:  434 GGAYPPDLSLITKARHDGQNYVFALLTGYRDPPAG----------------VSIREGLHYNPYFPGGAIAMPKMLIDGALEYEDGTPATEAQMGKDVVTFLSWAAEPEMEERKLMGFKWIFVLSL 760
            GGA PPDLSL+ KAR  G NY+++LL GY     G                V+  E  ++N YFPG AI+MP  L+D  + YEDGT AT+ QM +DVV +L+WAAEPE++ RK +G K +  L +
Sbjct:  130 GGAAPPDLSLLAKARPGGPNYIYSLLEGYASDSPGEPAEWWVKQQQEKGLEVAFNEAKYFNDYFPGHAISMPPPLMDDLITYEDGTAATKDQMAQDVVAYLNWAAEPELDARKSLGLKVLLFLGV 254          
BLAST of CX671621 vs. ExPASy Swiss-Prot
Match: CY1_RHOVI (Cytochrome c1 OS=Rhodopseudomonas viridis GN=petC PE=4 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.569e-21
Identity = 53/121 (43.80%), Postives = 67/121 (55.37%), Query Frame = -3
Query:  449 GAYPPDLSLITKAR------------------HDGQNYVFALLTGYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLIDGALEYEDGTPATEAQMGKDVVTFLSWAAEPEMEERKLMGFKWI 757
            GA PPDLS+I KAR                   +G +Y+ ALL GY DPP    + +G  YN YFPG  I M   + DG + Y DGTP T+ Q  KDV  FL WAAEP ++ RK +G+ W+
Sbjct:  136 GAVPPDLSVIAKARTFQRGFPWWVTDIFTQYNENGVDYIVALLNGYEDPPERFKVPDGSFYNKYFPGHIIGMTPPIADGLVTYGDGTPETQLQYSKDVAAFLMWAAEPTLDVRKRIGW-WV 255          
BLAST of CX671621 vs. ExPASy Swiss-Prot
Match: CY1_PARDE (Cytochrome c1 OS=Paracoccus denitrificans GN=petC PE=4 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.415e-14
Identity = 53/130 (40.77%), Postives = 64/130 (49.23%), Query Frame = -3
Query:  425 GGAYPPDLSLITKARHD-----------------GQNYVFALLTGYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLIDGALEYEDGTPATEAQMGKDVVTFLSWAAEPEMEERKLMGF-KWIFVLSLALL 760
            G    PDLSL+ KAR                   G  Y+ A+LTGY D          L++N  F G  I M   L D  + YEDGTPAT  QM  DV  FL W AEP+M +RK +GF   IF++ LA L
Sbjct:  303 GEGMGPDLSLMAKARAGFHGPYGTGLSQLFNGIGGPEYIHAVLTGY-DGEEKEEAGAVLYHNAAFAGNWIQMAAPLSDDQVTYEDGTPATVDQMATDVAAFLMWTAEPKMMDRKQVGFVSVIFLIVLAAL 431          
BLAST of CX671621 vs. ExPASy Swiss-Prot
Match: CY1_RHOCA (Cytochrome c1 OS=Rhodobacter capsulatus GN=petC PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.963e-11
Identity = 50/168 (29.76%), Postives = 71/168 (42.26%), Query Frame = -3
Query:  374 GGAYPPDLSLITKARHD-----------------GQNYVFALLTGYRD----PPAGVSIREGLHYNPYFPGGAIA------------------MPKMLIDGALEYEDGTPATEAQMGKDVVTFLSWAAEPEMEERKLMGFKWIFVLSLALLQAGYYRRLRWSVLKSRK 760
            G    PDLS++ KAR                   G  Y++  + G+ +     P G+   +G +YN  F  G +                   MP  L+D  + YEDGTPAT  QM +DV  FL WAAEP++  RK MG   + +L L  +      +  W+  K  K
Sbjct:  114 GDGMGPDLSVMAKARAGFSGPAGSGMNQLFKGMGGPEYIYNYVIGFEENPECAPEGI---DGYYYNKTFQIGGVPDTCKDAAGVKITHGSWARMPPPLVDDQVTYEDGTPATVDQMAQDVSAFLMWAAEPKLVARKQMGLVAMVMLGLLSVMLYLTNKRLWAPYKGHK 278          
The following BLAST results are available for this feature:
BLAST of CX671621 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
CY1_EUGGR2.635e-3250.74Cytochrome c1, heme protein OS=Euglena gracilis PE... [more]
CYBC_BRAJA2.160e-2648.55Cytochrome b/c1 OS=Bradyrhizobium japonicum GN=fbc... [more]
CY1_RHORU2.022e-2445.60Cytochrome c1 OS=Rhodospirillum rubrum GN=petC PE=... [more]
CY1_RHOVI3.569e-2143.80Cytochrome c1 OS=Rhodopseudomonas viridis GN=petC ... [more]
CY1_PARDE9.415e-1440.77Cytochrome c1 OS=Paracoccus denitrificans GN=petC ... [more]
CY1_RHOCA1.963e-1129.76Cytochrome c1 OS=Rhodobacter capsulatus GN=petC PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_12B10_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12B10-D20-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671621 ID=CX671621; Name=CX671621; organism=Citrus sinensis; type=EST; length=762bp
TTTTTTGATCAAAAACTGTTTCTATCGATCGGCCAACCACCCTGAATAAG
GTCAAAGGACTTTTATCCGATGTAAAGTACATTGACCAATGACCATTGTT
TCCTTCTGTTTCAAGGATTGCATTTACAAATCCCACTAATAACAAATTAT
GAGAAGTGATAATTCAGCAAGGAAAATATGGCACCCAAAAAGAAATCTCT
AACAAAAAATAATGTATCGGGTATATGGAGTAGCTTATTTCTTCACAACT
TGGGGAAAAAAAGATTCTTCAGGTCACTCCATTTCCAAAAAAGAAGTAGA
AACCTAGACCATCTGATCAAGCAATTATTTCTGATTTCCAGAAGGGAAGC
TAGTTGACGACATCAAGGACCAGCTTGCGGGACTTAAGAACTGACCACCT
CAGGCGCCGGTAGTAACCAGCTTGAAGTAAAGCCAATGACAGTACGAATA
TCCATTTAAAACCCATCAGCTTCCTCTCTTCCATTTCCGGTTCTGCAGCC
CACGATAAAAATGTCACAACATCTTTTCCCATCTGAGCTTCTGTTGCAGG
GGTACCATCTTCATACTCTAAAGCACCATCAATAAGCATTTTAGGCATAG
CAATTGCTCCGCCAGGAAAGTAAGGATTATAGTGCAATCCCTCTCTGATC
GAAACACCAGCAGGAGGATCACGATAACCAGTTAGAAGAGCAAACACATA
ATTCTGACCATCATGACGAGCTTTGGTAATAAGACTTAAATCTGGAGGAT
ATGCCCCTCCAT
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