CX671617

Overview
NameCX671617
Unique NameCX671617
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length787
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671617 vs. ExPASy Swiss-Prot
Match: FADH1_SCHPO (Probable S-(hydroxymethyl)glutathione dehydrogenase 1 OS=Schizosaccharomyces pombe GN=SPBC1539.07c PE=2 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 7.802e-35
Identity = 91/239 (38.08%), Postives = 116/239 (48.54%), Query Frame = 1
Query:   76 QAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGF-PAPLYPRXXXXXXXXXXXXXXXXXXXXXXXDIVIPTYVGECKDCENCTSRISNLCLKY-PIALNGLMLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGYGAAWKEAKVEKXXXXXXXXXXXXXXXXXXXXRMQGAAKIIGIDKNPWKKEKGEAFGMTDFIN 786
            + ITCKA V WG  EPL +E+IQV PPK+ EVRVK+ +++VCHTD     G  P   +P                        D VI  Y  ECK+C+ C S  +NLC K       GLM DGTSR S R + L H   CS++S+Y V+    +V +  S  L     L CG TTG+GA    AKVE                        GA++II ID N  K+   + FG TDFI+
Sbjct:    6 KTITCKAAVAWGAKEPLSIEDIQVAPPKAHEVRVKVDWSAVCHTDAYTLSGVDPEGAFPIVLGHEGAGIVESIGEGVINVRPGDHVILLYTPECKECKFCRSGKTNLCSKIRETQGRGLMPDGTSRFSCRDKTLLHYMGCSSFSQYTVVADISLVAISHSAPLRSICLLGCGVTTGFGAVTHSAKVESGSTVAVVGCGCVGLAAMQGAVAAGASRIIAIDINADKEVYAKKFGATDFID 244          
BLAST of CX671617 vs. ExPASy Swiss-Prot
Match: ADHX_MAIZE (Alcohol dehydrogenase class-3 OS=Zea mays GN=FDH PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.019e-34
Identity = 86/243 (35.39%), Postives = 122/243 (50.21%), Query Frame = 1
Query:   67 SNSQAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGF-PAPLYPRXXXXXXXXXXXXXXXXXXXXXXXDIVIPTYVGECKDCENCTSRISNLCLKYPIALN-GLML-DGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGYGAAWKEAKVEKXXXXXXXXXXXXXXXXXXXXRMQGAAKIIGIDKNPWKKEKGEAFGMTDFIN 786
            +  Q ITCKA V +   +PL +E++QV PP++ EVRVK+L+ ++CHTD     G  P  L+P                        D VIP Y  ECK+C+ C S  +NLC K   A   G+M+ D  SR SV G+ +YH    ST+S+Y V+    V +++P   L     L CG  TG GA W  AKVE                     +  GA+++IGID +  K +  + FG+T+F+N
Sbjct:    5 TQGQVITCKAAVAYEPNKPLVIEDVQVAPPQAGEVRVKILFTALCHTDHYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTDVQPGDHVIPCYQAECKECKFCKSGKTNLCGKVRSATGVGVMMNDMKSRFSVNGKPIYHFMGTSTFSQYTVVHDVSVAKINPQAPLDKVCLLGCGVPTGLGAVWNTAKVESGSVVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDNKKFDVAKNFGVTEFVN 247          
BLAST of CX671617 vs. ExPASy Swiss-Prot
Match: ADH7_RAT (Alcohol dehydrogenase class 4 mu/sigma chain OS=Rattus norvegicus GN=Adh7 PE=1 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 1.019e-34
Identity = 78/237 (32.91%), Postives = 118/237 (49.79%), Query Frame = 1
Query:   76 QAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGFPAPLYPRXXXXXXXXXXXXXXXXXXXXXXXDIVIPTYVGECKDCENCTSRISNLCLKYPIALNGLMLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGYGAAWKEAKVEKXXXXXXXXXXXXXXXXXXXXRMQGAAKIIGIDKNPWKKEKGEAFGMTDFIN 786
            + I CKA V WG  +P  +E+I+V PPK+ EVRVK+L   +C TD    +G     +P                        D VIP ++ +C++C  C +   NLC++  +   G++ DGT+R + +G+ + H  + ST++EY V+D + V ++D       A  + CGF+TGYGAA K AKV                      +  GA++IIGID N  K +K    G T+ IN
Sbjct:    6 KVIKCKAAVLWGTNQPFSIEDIEVAPPKAKEVRVKILATGICGTDDHVIKGTMVSKFPVIVGHEAVGIVESVGEEVTTVRPGDKVIPLFLPQCRECNPCRNPEGNLCIRSDLTGRGVLADGTTRFTCKGKPVQHFMNTSTFTEYTVLDESSVAKIDAEAPPEKACLIGCGFSTGYGAAVKTAKVSPGSTCAVFGLGGVGLSVVMGCKAAGASRIIGIDINKDKFQKALDVGATECIN 242          
BLAST of CX671617 vs. ExPASy Swiss-Prot
Match: ADH7_HUMAN (Alcohol dehydrogenase class 4 mu/sigma chain OS=Homo sapiens GN=ADH7 PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.331e-34
Identity = 77/237 (32.49%), Postives = 119/237 (50.21%), Query Frame = 1
Query:   76 QAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGFPAPLYPRXXXXXXXXXXXXXXXXXXXXXXXDIVIPTYVGECKDCENCTSRISNLCLKYPIALNGLMLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGYGAAWKEAKVEKXXXXXXXXXXXXXXXXXXXXRMQGAAKIIGIDKNPWKKEKGEAFGMTDFIN 786
            + I CKA V W   +P  +EEI+V PPK+ EVR+K+L   +C TD    +G     +P                        D VIP ++ +C++C  C +   NLC++  I   G++ DGT+R + +G+ ++H  + ST++EY V+D + V ++D +        + CGF+TGYGAA K  KV+                     +  GA++IIGID N  K EK  A G T+ I+
Sbjct:    6 KVIKCKAAVLWEQKQPFSIEEIEVAPPKTKEVRIKILATGICRTDDHVIKGTMVSKFPVIVGHEATGIVESIGEGVTTVKPGDKVIPLFLPQCRECNACRNPDGNLCIRSDITGRGVLADGTTRFTCKGKPVHHFMNTSTFTEYTVVDESSVAKIDDAAPPEKVCLIGCGFSTGYGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECIS 242          
BLAST of CX671617 vs. ExPASy Swiss-Prot
Match: ADH4_MOUSE (Alcohol dehydrogenase 4 OS=Mus musculus GN=Adh4 PE=1 SV=3)

HSP 1 Score: 146.747 bits (369), Expect = 1.331e-34
Identity = 82/245 (33.47%), Postives = 119/245 (48.57%), Query Frame = 1
Query:   67 SNSQAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGFPAPLYPRXXXXXXXXXXXXXXXXXXXXXXXDIVIPTYVGECKDCENCTSRISNLC-----LKYPIALNGLMLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGYGAAWKEAKVEKXXXXXXXXXXXXXXXXXXXXRMQGAAKIIGIDKNPWKKEKGEAFGMTDFIN 786
            +  + I CKA + W  G PL +EEI+V PPK+ EVR++++   VC TDI  ++     L+P                        D VIP +  +CK C+ C S ++NLC      KYP     LM D TSR + +G+ +YH    S++S+Y V+    + RVD   +L     + CGF++GYGAA   AKV                      ++ GA++II ID N  K  K +A G TD +N
Sbjct:    3 TQGKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPKKKALFPVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANLARVDDEANLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLN 247          
BLAST of CX671617 vs. ExPASy Swiss-Prot
Match: ADH1_ALLMI (Alcohol dehydrogenase 1 OS=Alligator mississippiensis PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.331e-34
Identity = 80/238 (33.61%), Postives = 117/238 (49.16%), Query Frame = 1
Query:   76 QAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGFPAPLYPRXXXXXXXXXXXXXXXXXXXXXXXDIVIPTYVGECKDCENCTSRISNLCLKYPIAL-NGLMLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGYGAAWKEAKVEKXXXXXXXXXXXXXXXXXXXXRMQGAAKIIGIDKNPWKKEKGEAFGMTDFIN 786
            + I CKA + W + +P  +EEI+V PPK+ EVR+K+L   +C +D   + G      P                        D VIP +V +C +C  C     NLC++  +   +GLM DGTSR + +G+ ++H    ST++EY V+    V R+D +  L     + CGF+TGYGAA K+AKVE                     +  GA++IIGID N  K  K +  G T+ IN
Sbjct:    5 KVIKCKAAITWEIKKPFSIEEIEVAPPKAHEVRIKILATGICRSDDHVTAGLLTMPLPMILGHEAAGVVESTGEGVTSLKPGDKVIPLFVPQCGECMPCLKSNGNLCIRNDLGSPSGLMADGTSRFTCKGKDIHHFIGTSTFTEYTVVHETAVARIDAAAPLEKVCLIGCGFSTGYGAAVKDAKVEPGSTCAVFGLGGVGLSTIMGCKAAGASRIIGIDINKDKFAKAKELGATECIN 242          
BLAST of CX671617 vs. ExPASy Swiss-Prot
Match: ADHL_GADMO (Alcohol dehydrogenase class-3 chain L OS=Gadus morhua PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.965e-34
Identity = 83/239 (34.73%), Postives = 115/239 (48.12%), Query Frame = 1
Query:   76 QAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGF-PAPLYPRXXXXXXXXXXXXXXXXXXXXXXXDIVIPTYVGECKDCENCTSRISNLCLKYPIALN-GLMLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGYGAAWKEAKVEKXXXXXXXXXXXXXXXXXXXXRMQGAAKIIGIDKNPWKKEKGEAFGMTDFIN 786
            + I C+A V W  G+PL +EE++V PP++ EVR+K++   +CHTD     G  P  ++P                        D VIP YV +C +C+ C +  +NLC K  +    GLM +GTSR S  GQ L+H    ST+SEY V+    + +V     L     L C  +TGYGAA   AKVE                     +  GA++II ID NP K    + FG TD +N
Sbjct:    5 KTIRCRAAVAWEAGKPLSMEEVEVAPPQAGEVRIKIVATGICHTDAYTLSGSDPEGVFPSVLGHEGAGIVESVGEGVTKFKSGDAVIPLYVPQCGECKFCKNPKTNLCQKIRLTQGKGLMPNGTSRFSCNGQVLFHFMGSSTFSEYTVVAEISLAKVHEKAPLDKVCLLGCAISTGYGAALNTAKVEAGSTCAVFGLGALGLAVIMGCQAAGASRIIAIDVNPDKFRIAKEFGATDLVN 243          
BLAST of CX671617 vs. ExPASy Swiss-Prot
Match: ADH4_RAT (Alcohol dehydrogenase 4 OS=Rattus norvegicus GN=Adh4 PE=2 SV=3)

HSP 1 Score: 145.591 bits (366), Expect = 2.965e-34
Identity = 83/245 (33.88%), Postives = 117/245 (47.76%), Query Frame = 1
Query:   67 SNSQAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGFPAPLYPRXXXXXXXXXXXXXXXXXXXXXXXDIVIPTYVGECKDCENCTSRISNLC-----LKYPIALNGLMLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGYGAAWKEAKVEKXXXXXXXXXXXXXXXXXXXXRMQGAAKIIGIDKNPWKKEKGEAFGMTDFIN 786
            +  + ITCKA + W    PL +EEI+V PPK+ EVR+K++   VC TDI  +      L+P                        D VIP +  +CK C+ C S ++NLC      KYP     LM D TSR + + + +YH    S++S+Y V+    + RVD   +L     + CGFT+GYGAA   AKV                      ++ GA++II ID N  K  K +A G TD +N
Sbjct:    3 TQGKVITCKAAIAWKTDSPLCIEEIEVSPPKAHEVRIKVIATCVCPTDINATNPKKKALFPVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKKCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRFTSKERSIYHFMGVSSFSQYTVVSEANLARVDDEANLERVCLIGCGFTSGYGAAINTAKVTPGSACAVFGLGCVGLSAVIGCKIAGASRIIAIDINSEKFPKAKALGATDCLN 247          
BLAST of CX671617 vs. ExPASy Swiss-Prot
Match: ADHQ_RABIT (Alcohol dehydrogenase class-2 isozyme 2 OS=Oryctolagus cuniculus GN=ADH2-2 PE=2 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 5.057e-34
Identity = 81/246 (32.93%), Postives = 120/246 (48.78%), Query Frame = 1
Query:   67 SNSQAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDI-LCSEGFPAPLYPRXXXXXXXXXXXXXXXXXXXXXXXDIVIPTYVGECKDCENCTSRISNLCLKY-----PIALNGLMLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGYGAAWKEAKVEKXXXXXXXXXXXXXXXXXXXXRMQGAAKIIGIDKNPWKKEKGEAFGMTDFIN 786
            +  + I CKA + W  G+PL +EE++V PPK+ EVRV+++ ASVC +D  + +  F   L P                        D VIP YV  C+ C+ C S ++N C K+     PI    LM D TSR + +G+ +YH    S +S+Y V+    + ++D   +L     + CGF+TGYGAA  +AKV                      +  GA++II +D N  K  K +A G TD +N
Sbjct:    3 TKGKVIKCKAAIAWEAGKPLSIEEVEVAPPKAHEVRVQIIAASVCRSDTYVINPAFKEGLLPVILGHECAGIVESVGPGVNNFKPGDKVIPLYVPHCRKCKFCQSPLTNFCTKFSEHKNPIIEQELMDDKTSRFTCKGKSIYHFLGISAFSQYTVVKDINLAKIDDDANLKRVCLIGCGFSTGYGAAINDAKVTPGSTCAVFGLGGVGLSAVIGCKTAGASRIIAVDINSDKFAKAKALGATDCLN 248          
BLAST of CX671617 vs. ExPASy Swiss-Prot
Match: ADH4_STRCA (Alcohol dehydrogenase 4 OS=Struthio camelus GN=ADH4 PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 6.604e-34
Identity = 83/246 (33.74%), Postives = 119/246 (48.37%), Query Frame = 1
Query:   67 SNSQAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDI-LCSEGFPAPLYPRXXXXXXXXXXXXXXXXXXXXXXXDIVIPTYVGECKDCENCTSRISNLC-----LKYPIALNGLMLDGTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVRVDPSIDLSHASFLSCGFTTGYGAAWKEAKVEKXXXXXXXXXXXXXXXXXXXXRMQGAAKIIGIDKNPWKKEKGEAFGMTDFIN 786
            +  + I CKA + W  G+PL VEEI+V PPK  EVRVK++   VC TD    +  F   ++P                        D VIP Y+ +C  C+ C +  +NLC     +K PI+   +M DGTSR + +G+ +YH    ST+SEY V+  + + ++D +  L     + CGF+TGYGAA   A+VE                     +  GA+KI GID N  K    +  G TD +N
Sbjct:    2 TEGKVIKCKAAIAWEAGKPLSVEEIEVSPPKDHEVRVKIVATGVCRTDEHAINPSFKEGVFPVILGHEGAGIVESIGQGVSKFKPGDKVIPLYMPQCGHCKFCLNPKTNLCEKISKIKTPISDQEVMSDGTSRFTCKGKPIYHFMGTSTFSEYTVVSESSLAKIDAAAPLDKVCLIGCGFSTGYGAAINTAQVEPGSTCAVFGLGGVGLSAVMGCKAAGASKIFGIDINKDKFPLAKKLGATDCLN 247          
The following BLAST results are available for this feature:
BLAST of CX671617 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 113
Match NameE-valueIdentityDescription
FADH1_SCHPO7.802e-3538.08Probable S-(hydroxymethyl)glutathione dehydrogenas... [more]
ADHX_MAIZE1.019e-3435.39Alcohol dehydrogenase class-3 OS=Zea mays GN=FDH P... [more]
ADH7_RAT1.019e-3432.91Alcohol dehydrogenase class 4 mu/sigma chain OS=Ra... [more]
ADH7_HUMAN1.331e-3432.49Alcohol dehydrogenase class 4 mu/sigma chain OS=Ho... [more]
ADH4_MOUSE1.331e-3433.47Alcohol dehydrogenase 4 OS=Mus musculus GN=Adh4 PE... [more]
ADH1_ALLMI1.331e-3433.61Alcohol dehydrogenase 1 OS=Alligator mississippien... [more]
ADHL_GADMO2.965e-3434.73Alcohol dehydrogenase class-3 chain L OS=Gadus mor... [more]
ADH4_RAT2.965e-3433.88Alcohol dehydrogenase 4 OS=Rattus norvegicus GN=Ad... [more]
ADHQ_RABIT5.057e-3432.93Alcohol dehydrogenase class-2 isozyme 2 OS=Oryctol... [more]
ADH4_STRCA6.604e-3433.74Alcohol dehydrogenase 4 OS=Struthio camelus GN=ADH... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_12B08_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12B08-D16-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671617 ID=CX671617; Name=CX671617; organism=Citrus sinensis; type=EST; length=787bp
ACTAGTTCCAGAGCTCATCTCCGCTCGAAATTCGAAGCTGCAAAATCTAC
AGCAATACTAACAATGAGCAATTCACAAGCCATAACGTGCAAAGCTGTGG
TATGCTGGGGTTTAGGAGAGCCATTAAAGGTAGAGGAGATACAAGTAGAG
CCTCCGAAATCAACTGAAGTTAGGGTTAAGATGCTTTATGCCAGTGTTTG
TCACACTGATATCCTTTGCTCTGAAGGATTCCCAGCGCCTCTCTATCCTC
GTGTTCTCGGGCACGAAGGTGTCGGGGTGGTGGAGAGTGTTGGGGATGAA
GTGAAAGAAGTAAAAGAAGGAGATATTGTGATTCCAACTTATGTTGGAGA
ATGCAAAGATTGTGAAAATTGCACATCACGAATCAGCAATTTATGCCTAA
AATATCCAATAGCACTGAACGGTTTAATGCTTGATGGCACTTCAAGAATG
TCCGTGAGAGGCCAAAAATTGTATCACATTTTTTCATGCTCCACTTGGTC
TGAATATATGGTCATCGATGCCAATTATGTAGTCAGAGTTGATCCAAGCA
TAGACCTTTCGCATGCTAGCTTCCTTTCATGTGGATTTACAACTGGTTAT
GGGGCGGCTTGGAAGGAAGCCAAAGTTGAAAAAGGATCTAGTGTTGCTGT
TTTAGGCCTTGGTACTGTTGGATTAGGGGCTGTTGATGGAGCCAGGATGC
AAGGGGCAGCTAAGATAATTGGGATAGACAAGAACCCATGGAAAAAAGAA
AAGGGGGAAGCTTTTGGAATGACAGATTTCATAAACC
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