EY680240
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY680240 vs. ExPASy Swiss-Prot
Match: RHLB_XANC8 (ATP-dependent RNA helicase rhlB OS=Xanthomonas campestris pv. campestris (strain 8004) GN=rhlB PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 4.313e-13 Identity = 64/199 (32.16%), Postives = 99/199 (49.75%), Query Frame = 2 Query: 8 NLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRV-------DPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKK-LGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETV 580 +L P L+ GL F + + IQA++LP+ L P ++ QA+ G+GKT F++ +++R+ D + P+AL + PTRELAIQ + K G G+ A+ +Y + V+I TPG + ++ K + +I V DEAD M D +D + + ER G Q LLFSAT + V Sbjct: 15 DLHPALVAGLE-SAGFTRCTPIQALTLPVAL--PGGDVAGQAQTGTGKTLAFLVAVMNRLLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGL--RFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPER--GTRQTLLFSATLSHRV 206
BLAST of EY680240 vs. ExPASy Swiss-Prot
Match: RH45_ORYSJ (DEAD-box ATP-dependent RNA helicase 45 OS=Oryza sativa subsp. japonica GN=Os08g0154200 PE=3 SV=2) HSP 1 Score: 75.485 bits (184), Expect = 4.313e-13 Identity = 64/194 (32.99%), Postives = 89/194 (45.88%), Query Frame = 2 Query: 44 EMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNL-----KAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPG---TIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRI 601 ++ F+KP IQA +LP+I++ R+ I A+ GSGKT FVL ML V P L + PTREL +Q ++K K GI C + A++V+ TPG I S K R+ LV DEAD M D GF RI ++ + Q +LFSA F V+ ++ Sbjct: 302 KLGFEKPMPIQAQALPIIMSG--RDCIGIAKTGSGKTLAFVLPMLRHVKDQPPVVPGDGPIGLIMAPTRELVVQIHSDIKKFAKSLGI--NCVAIYGGSGVAQQISELKRGAEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFD-MGFEPQITRI---VQNTRPDRQTVLFSAIFPRQVEILARKV 487
BLAST of EY680240 vs. ExPASy Swiss-Prot
Match: DDX47_HUMAN (Probable ATP-dependent RNA helicase DDX47 OS=Homo sapiens GN=DDX47 PE=1 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 4.313e-13 Identity = 63/186 (33.87%), Postives = 95/186 (51.08%), Query Frame = 2 Query: 44 EMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQ---ALCICPTRELAIQNLEVLRKMGKHTGITSECAVP--TDSTNYVPISKRPPVTAQVVIGTPG-TIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVK 583 ++ + KP+KIQ ++P+ L R++I A GSGKT F L +L+ + L+ PQ AL + PTRELA Q E +G G+ S V + + ++K+P ++I TPG I + K LK LV DEAD +L+ F + +I+K I R + LFSAT + V+ Sbjct: 41 QLGWTKPTKIQIEAIPLALQG--RDIIGLAETGSGKTGAFALPILNAL---LETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKP----HIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILN-MDFETEVDKILKVIPRDR---KTFLFSATMTKKVQ 213
BLAST of EY680240 vs. ExPASy Swiss-Prot
Match: DDX46_DICDI (ATP-dependent RNA helicase ddx46 OS=Dictyostelium discoideum GN=helB1 PE=2 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 4.313e-13 Identity = 66/198 (33.33%), Postives = 95/198 (47.98%), Query Frame = 2 Query: 35 LYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQ-----ALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDS-TNYVPISKRPPVTAQVVIGTPGTIKKWMSAKK---LGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRI 601 L + +++KP+ IQA ++P I+ R+LI AR GSGKT F+L M + K+ AL + PTRELA+Q +K K G+ + C S + + KR A +V+ TPG + + A R+ LV DEAD M D GF I+ I Q ++FSATF V+N +I Sbjct: 523 LLKKFQYEKPTSIQAQTIPAIMNG--RDLIGIARTGSGKTLAFLLPMFRHILAQPKSAPGEGMIALIMSPTRELALQIHVECKKFSKVLGLRTACVYGGASISEQIAELKR---GADIVVCTPGRMIDILCANNRRITNLRRVTFLVLDEADRMFD-MGFGPQINCIVDSIRPDR---QTIMFSATFPPKVENVAKKI 711
BLAST of EY680240 vs. ExPASy Swiss-Prot
Match: DDX23_DICDI (ATP-dependent RNA helicase ddx23 OS=Dictyostelium discoideum GN=helB2 PE=2 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 4.313e-13 Identity = 68/231 (29.44%), Postives = 104/231 (45.02%), Query Frame = 2 Query: 8 NLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRV--------DPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTN--YVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGF------------------RDDSLRIMKDIERSSGHCQVLLFSATFNETV----KNFVTRIC 604 NL E+L+ + ++ ++KPS IQ S+P+ LT R+++ A GSGKT FV+ ML + D P AL + PTREL Q + R +H G V S +SK +++I TPG + + + L ++ +V DEAD M+D GF DD + ++ +RS + +LFSAT V K ++ R C Sbjct: 419 NLPREILEAIR-QLGYEKPSPIQMQSIPISLTG--RDILGIAETGSGKTCAFVIPMLIYISKQPRLTKDTEADGPYALVMAPTRELVQQIEKETRNFAQHFGFRVVSLVGGQSIEDQAYQVSKG----CEIIIATPGRLNDCLEKRYLVLNQCNYIVLDEADMMID-LGFEPQVTSVLDAMPSSFLKSEDDEMAEKQESDRSHIYRTTILFSATMPPLVEKLSKKYLRRPC 641
BLAST of EY680240 vs. ExPASy Swiss-Prot
Match: DBP2_EMENI (ATP-dependent RNA helicase dbp2 OS=Emericella nidulans GN=dbp2 PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 4.313e-13 Identity = 60/191 (31.41%), Postives = 91/191 (47.64%), Query Frame = 2 Query: 53 FQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVD--PNLK---APQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVT-----AQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVT 595 F+KP+ IQ+ PM L+ R+++ A GSGKT + L + ++ P L P L + PTRELA+Q + K GK + I + C Y + K P + +V I TPG + + A + R+ LV DEAD MLD GF +I+ I C ++SAT+ + V+ + Sbjct: 160 FEKPTAIQSQGWPMALSG--RDVVGIAETGSGKTLSYCLPAIVHINAQPLLAPGDGPIVLILAPTRELAVQIQAEISKFGKSSRIRNTCV-------YGGVPKGPQIRDLSRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLD-MGFEPQIRKIISQIRPDRQTC---MWSATWPKEVRQLAS 337
BLAST of EY680240 vs. ExPASy Swiss-Prot
Match: DBP10_YEAST (ATP-dependent RNA helicase DBP10 OS=Saccharomyces cerevisiae GN=DBP10 PE=1 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 4.313e-13 Identity = 54/184 (29.35%), Postives = 93/184 (50.54%), Query Frame = 2 Query: 53 FQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLK--APQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDS--TNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFV 592 F++P+ IQ ++P+IL R+++ AR GSGKT F+L M+ ++ + +A+ + P+RELA+Q V + + T + S DS + + P V+I TPG L ++ +V+DEAD + E GF++ ++ + + Q LLFSAT ++ +FV Sbjct: 157 FRQPTPIQRKTIPLILQS--RDIVGMARTGSGKTAAFILPMVEKLKSHSGKIGARAVILSPSRELAMQTFNVFKDFARGTELRSVLLTGGDSLEEQFGMMMTNP----DVIIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLF-EMGFQEQLNELLASLPTTR---QTLLFSATLPNSLVDFV 330
BLAST of EY680240 vs. ExPASy Swiss-Prot
Match: DBP10_YEAS7 (ATP-dependent RNA helicase DBP10 OS=Saccharomyces cerevisiae (strain YJM789) GN=DBP10 PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 4.313e-13 Identity = 54/184 (29.35%), Postives = 93/184 (50.54%), Query Frame = 2 Query: 53 FQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLK--APQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDS--TNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFV 592 F++P+ IQ ++P+IL R+++ AR GSGKT F+L M+ ++ + +A+ + P+RELA+Q V + + T + S DS + + P V+I TPG L ++ +V+DEAD + E GF++ ++ + + Q LLFSAT ++ +FV Sbjct: 157 FRQPTPIQRKTIPLILQS--RDIVGMARTGSGKTAAFILPMVEKLKSHSGKIGARAVILSPSRELAMQTFNVFKDFARGTELRSVLLTGGDSLEEQFGMMMTNP----DVIIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLF-EMGFQEQLNELLASLPTTR---QTLLFSATLPNSLVDFV 330
BLAST of EY680240 vs. ExPASy Swiss-Prot
Match: RRP3_ASHGO (ATP-dependent rRNA helicase RRP3 OS=Ashbya gossypii GN=RRP3 PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 5.633e-13 Identity = 60/195 (30.77%), Postives = 98/195 (50.26%), Query Frame = 2 Query: 2 DLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFS--RLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETV 580 +L+L PEL++ + F KP+ IQ+ ++P L +++I A+ GSGKT F + +L+R+ + + A + PTRELA Q E +G G+ + C V N + ++ ++I TPG + + K GF+ + + LV DEAD +L+ F RI+K+I LFSAT + Sbjct: 70 ELDLVPELIEACD-NLNFTKPTPIQSKAIPPALQG--KDIIGLAQTGSGKTAAFAIPILNRLWHDQQPYYACILAPTRELAQQIKETFDSLGSLMGVRTTCIV--GGMNMMDQARDLMRKPHIIIATPGRLMDHLEVHKRGFALRKQQFLVMDEADRLLN-MKFGPVLDRILKNIPTKVR--TTYLFSATMTSKI 256
BLAST of EY680240 vs. ExPASy Swiss-Prot
Match: RH48_ORYSJ (DEAD-box ATP-dependent RNA helicase 48 OS=Oryza sativa subsp. japonica GN=Os02g0826100 PE=2 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 5.633e-13 Identity = 65/211 (30.81%), Postives = 104/211 (49.29%), Query Frame = 2 Query: 2 DLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVL--------GMLSRVDPNLKAPQALCICPTRELAIQ---NLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI------KKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVK 583 + +SP +K L + + + + +Q +LPM L ++++ +A+ G+GK+ F+L M S + + +L +CPTRELAIQ VL K + G+ S + + P Q+++ TPG + K S + +G LK+LV DEADH+LD GFR D +I+ + R Q LLFSAT + V+ Sbjct: 346 ECGISPLTVKAL-TDAGYVQTTVVQETALPMCLEG--KDVLVKAKTGTGKSAAFLLPAIESVLNAMKSHTNHRVSPIFSLILCPTRELAIQLTAEANVLLKYHQGIGVQSLIGGTRFKLDQRRLESDP---CQILVATPGRLLDHIENKSSFSVRLMG---LKLLVLDEADHLLD-LGFRTDIEKIVDSLPRQR---QTLLFSATIPKEVR 543 The following BLAST results are available for this feature:
BLAST of EY680240 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >EY680240 ID=EY680240; Name=EY680240; organism=Citrus sinensis; type=EST; length=856bpback to top |