EY680240

Overview
NameEY680240
Unique NameEY680240
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length856
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY680240 vs. ExPASy Swiss-Prot
Match: RHLB_XANC8 (ATP-dependent RNA helicase rhlB OS=Xanthomonas campestris pv. campestris (strain 8004) GN=rhlB PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.313e-13
Identity = 64/199 (32.16%), Postives = 99/199 (49.75%), Query Frame = 2
Query:    8 NLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRV-------DPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKK-LGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETV 580
            +L P L+ GL     F + + IQA++LP+ L  P  ++  QA+ G+GKT  F++ +++R+       D   + P+AL + PTRELAIQ  +   K G   G+    A+     +Y    +       V+I TPG +  ++   K +     +I V DEAD M D    +D    + +  ER  G  Q LLFSAT +  V
Sbjct:   15 DLHPALVAGLE-SAGFTRCTPIQALTLPVAL--PGGDVAGQAQTGTGKTLAFLVAVMNRLLIRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGL--RFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPER--GTRQTLLFSATLSHRV 206          
BLAST of EY680240 vs. ExPASy Swiss-Prot
Match: RH45_ORYSJ (DEAD-box ATP-dependent RNA helicase 45 OS=Oryza sativa subsp. japonica GN=Os08g0154200 PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 4.313e-13
Identity = 64/194 (32.99%), Postives = 89/194 (45.88%), Query Frame = 2
Query:   44 EMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNL-----KAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPG---TIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRI 601
            ++ F+KP  IQA +LP+I++   R+ I  A+ GSGKT  FVL ML  V           P  L + PTREL +Q    ++K  K  GI   C      +            A++V+ TPG    I    S K     R+  LV DEAD M D  GF     RI   ++ +    Q +LFSA F   V+    ++
Sbjct:  302 KLGFEKPMPIQAQALPIIMSG--RDCIGIAKTGSGKTLAFVLPMLRHVKDQPPVVPGDGPIGLIMAPTRELVVQIHSDIKKFAKSLGI--NCVAIYGGSGVAQQISELKRGAEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFD-MGFEPQITRI---VQNTRPDRQTVLFSAIFPRQVEILARKV 487          
BLAST of EY680240 vs. ExPASy Swiss-Prot
Match: DDX47_HUMAN (Probable ATP-dependent RNA helicase DDX47 OS=Homo sapiens GN=DDX47 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.313e-13
Identity = 63/186 (33.87%), Postives = 95/186 (51.08%), Query Frame = 2
Query:   44 EMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQ---ALCICPTRELAIQNLEVLRKMGKHTGITSECAVP--TDSTNYVPISKRPPVTAQVVIGTPG-TIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVK 583
            ++ + KP+KIQ  ++P+ L    R++I  A  GSGKT  F L +L+ +   L+ PQ   AL + PTRELA Q  E    +G   G+ S   V      +  + ++K+P     ++I TPG  I    + K      LK LV DEAD +L+   F  +  +I+K I R     +  LFSAT  + V+
Sbjct:   41 QLGWTKPTKIQIEAIPLALQG--RDIIGLAETGSGKTGAFALPILNAL---LETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKP----HIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILN-MDFETEVDKILKVIPRDR---KTFLFSATMTKKVQ 213          
BLAST of EY680240 vs. ExPASy Swiss-Prot
Match: DDX46_DICDI (ATP-dependent RNA helicase ddx46 OS=Dictyostelium discoideum GN=helB1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.313e-13
Identity = 66/198 (33.33%), Postives = 95/198 (47.98%), Query Frame = 2
Query:   35 LYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQ-----ALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDS-TNYVPISKRPPVTAQVVIGTPGTIKKWMSAKK---LGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVTRI 601
            L  + +++KP+ IQA ++P I+    R+LI  AR GSGKT  F+L M   +    K+       AL + PTRELA+Q     +K  K  G+ + C     S +  +   KR    A +V+ TPG +   + A         R+  LV DEAD M D  GF      I+  I       Q ++FSATF   V+N   +I
Sbjct:  523 LLKKFQYEKPTSIQAQTIPAIMNG--RDLIGIARTGSGKTLAFLLPMFRHILAQPKSAPGEGMIALIMSPTRELALQIHVECKKFSKVLGLRTACVYGGASISEQIAELKR---GADIVVCTPGRMIDILCANNRRITNLRRVTFLVLDEADRMFD-MGFGPQINCIVDSIRPDR---QTIMFSATFPPKVENVAKKI 711          
BLAST of EY680240 vs. ExPASy Swiss-Prot
Match: DDX23_DICDI (ATP-dependent RNA helicase ddx23 OS=Dictyostelium discoideum GN=helB2 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.313e-13
Identity = 68/231 (29.44%), Postives = 104/231 (45.02%), Query Frame = 2
Query:    8 NLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRV--------DPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTN--YVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGF------------------RDDSLRIMKDIERSSGHCQVLLFSATFNETV----KNFVTRIC 604
            NL  E+L+ +  ++ ++KPS IQ  S+P+ LT   R+++  A  GSGKT  FV+ ML  +        D     P AL + PTREL  Q  +  R   +H G      V   S       +SK      +++I TPG +   +  + L  ++   +V DEAD M+D  GF                   DD +   ++ +RS  +   +LFSAT    V    K ++ R C
Sbjct:  419 NLPREILEAIR-QLGYEKPSPIQMQSIPISLTG--RDILGIAETGSGKTCAFVIPMLIYISKQPRLTKDTEADGPYALVMAPTRELVQQIEKETRNFAQHFGFRVVSLVGGQSIEDQAYQVSKG----CEIIIATPGRLNDCLEKRYLVLNQCNYIVLDEADMMID-LGFEPQVTSVLDAMPSSFLKSEDDEMAEKQESDRSHIYRTTILFSATMPPLVEKLSKKYLRRPC 641          
BLAST of EY680240 vs. ExPASy Swiss-Prot
Match: DBP2_EMENI (ATP-dependent RNA helicase dbp2 OS=Emericella nidulans GN=dbp2 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.313e-13
Identity = 60/191 (31.41%), Postives = 91/191 (47.64%), Query Frame = 2
Query:   53 FQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVD--PNLK---APQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVT-----AQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFVT 595
            F+KP+ IQ+   PM L+   R+++  A  GSGKT  + L  +  ++  P L     P  L + PTRELA+Q    + K GK + I + C        Y  + K P +       +V I TPG +   + A +    R+  LV DEAD MLD  GF     +I+  I      C   ++SAT+ + V+   +
Sbjct:  160 FEKPTAIQSQGWPMALSG--RDVVGIAETGSGKTLSYCLPAIVHINAQPLLAPGDGPIVLILAPTRELAVQIQAEISKFGKSSRIRNTCV-------YGGVPKGPQIRDLSRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLD-MGFEPQIRKIISQIRPDRQTC---MWSATWPKEVRQLAS 337          
BLAST of EY680240 vs. ExPASy Swiss-Prot
Match: DBP10_YEAST (ATP-dependent RNA helicase DBP10 OS=Saccharomyces cerevisiae GN=DBP10 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.313e-13
Identity = 54/184 (29.35%), Postives = 93/184 (50.54%), Query Frame = 2
Query:   53 FQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLK--APQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDS--TNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFV 592
            F++P+ IQ  ++P+IL    R+++  AR GSGKT  F+L M+ ++  +      +A+ + P+RELA+Q   V +   + T + S      DS    +  +   P     V+I TPG          L    ++ +V+DEAD +  E GF++    ++  +  +    Q LLFSAT   ++ +FV
Sbjct:  157 FRQPTPIQRKTIPLILQS--RDIVGMARTGSGKTAAFILPMVEKLKSHSGKIGARAVILSPSRELAMQTFNVFKDFARGTELRSVLLTGGDSLEEQFGMMMTNP----DVIIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLF-EMGFQEQLNELLASLPTTR---QTLLFSATLPNSLVDFV 330          
BLAST of EY680240 vs. ExPASy Swiss-Prot
Match: DBP10_YEAS7 (ATP-dependent RNA helicase DBP10 OS=Saccharomyces cerevisiae (strain YJM789) GN=DBP10 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.313e-13
Identity = 54/184 (29.35%), Postives = 93/184 (50.54%), Query Frame = 2
Query:   53 FQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLK--APQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDS--TNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVKNFV 592
            F++P+ IQ  ++P+IL    R+++  AR GSGKT  F+L M+ ++  +      +A+ + P+RELA+Q   V +   + T + S      DS    +  +   P     V+I TPG          L    ++ +V+DEAD +  E GF++    ++  +  +    Q LLFSAT   ++ +FV
Sbjct:  157 FRQPTPIQRKTIPLILQS--RDIVGMARTGSGKTAAFILPMVEKLKSHSGKIGARAVILSPSRELAMQTFNVFKDFARGTELRSVLLTGGDSLEEQFGMMMTNP----DVIIATPGRFLHLKVEMNLDLKSVEYVVFDEADRLF-EMGFQEQLNELLASLPTTR---QTLLFSATLPNSLVDFV 330          
BLAST of EY680240 vs. ExPASy Swiss-Prot
Match: RRP3_ASHGO (ATP-dependent rRNA helicase RRP3 OS=Ashbya gossypii GN=RRP3 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.633e-13
Identity = 60/195 (30.77%), Postives = 98/195 (50.26%), Query Frame = 2
Query:    2 DLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTIKKWMSAKKLGFS--RLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETV 580
            +L+L PEL++     + F KP+ IQ+ ++P  L    +++I  A+ GSGKT  F + +L+R+  + +   A  + PTRELA Q  E    +G   G+ + C V     N +  ++       ++I TPG +   +   K GF+  + + LV DEAD +L+   F     RI+K+I          LFSAT    +
Sbjct:   70 ELDLVPELIEACD-NLNFTKPTPIQSKAIPPALQG--KDIIGLAQTGSGKTAAFAIPILNRLWHDQQPYYACILAPTRELAQQIKETFDSLGSLMGVRTTCIV--GGMNMMDQARDLMRKPHIIIATPGRLMDHLEVHKRGFALRKQQFLVMDEADRLLN-MKFGPVLDRILKNIPTKVR--TTYLFSATMTSKI 256          
BLAST of EY680240 vs. ExPASy Swiss-Prot
Match: RH48_ORYSJ (DEAD-box ATP-dependent RNA helicase 48 OS=Oryza sativa subsp. japonica GN=Os02g0826100 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.633e-13
Identity = 65/211 (30.81%), Postives = 104/211 (49.29%), Query Frame = 2
Query:    2 DLNLSPELLKGLYVEMKFQKPSKIQAISLPMILTPPYRNLIAQARNGSGKTTCFVL--------GMLSRVDPNLKAPQALCICPTRELAIQ---NLEVLRKMGKHTGITSECAVPTDSTNYVPISKRPPVTAQVVIGTPGTI------KKWMSAKKLGFSRLKILVYDEADHMLDEAGFRDDSLRIMKDIERSSGHCQVLLFSATFNETVK 583
            +  +SP  +K L  +  + + + +Q  +LPM L    ++++ +A+ G+GK+  F+L         M S  +  +    +L +CPTRELAIQ      VL K  +  G+ S         +   +   P    Q+++ TPG +      K   S + +G   LK+LV DEADH+LD  GFR D  +I+  + R     Q LLFSAT  + V+
Sbjct:  346 ECGISPLTVKAL-TDAGYVQTTVVQETALPMCLEG--KDVLVKAKTGTGKSAAFLLPAIESVLNAMKSHTNHRVSPIFSLILCPTRELAIQLTAEANVLLKYHQGIGVQSLIGGTRFKLDQRRLESDP---CQILVATPGRLLDHIENKSSFSVRLMG---LKLLVLDEADHLLD-LGFRTDIEKIVDSLPRQR---QTLLFSATIPKEVR 543          
The following BLAST results are available for this feature:
BLAST of EY680240 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RHLB_XANC84.313e-1332.16ATP-dependent RNA helicase rhlB OS=Xanthomonas cam... [more]
RH45_ORYSJ4.313e-1332.99DEAD-box ATP-dependent RNA helicase 45 OS=Oryza sa... [more]
DDX47_HUMAN4.313e-1333.87Probable ATP-dependent RNA helicase DDX47 OS=Homo ... [more]
DDX46_DICDI4.313e-1333.33ATP-dependent RNA helicase ddx46 OS=Dictyostelium ... [more]
DDX23_DICDI4.313e-1329.44ATP-dependent RNA helicase ddx23 OS=Dictyostelium ... [more]
DBP2_EMENI4.313e-1331.41ATP-dependent RNA helicase dbp2 OS=Emericella nidu... [more]
DBP10_YEAST4.313e-1329.35ATP-dependent RNA helicase DBP10 OS=Saccharomyces ... [more]
DBP10_YEAS74.313e-1329.35ATP-dependent RNA helicase DBP10 OS=Saccharomyces ... [more]
RRP3_ASHGO5.633e-1330.77ATP-dependent rRNA helicase RRP3 OS=Ashbya gossypi... [more]
RH48_ORYSJ5.633e-1330.81DEAD-box ATP-dependent RNA helicase 48 OS=Oryza sa... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-008-H09-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680240 ID=EY680240; Name=EY680240; organism=Citrus sinensis; type=EST; length=856bp
AGATTTGAATCTCTCACCAGAGCTCCTAAAGGGATTATACGTGGAAATGA
AATTCCAGAAGCCTAGCAAGATTCAAGCCATCAGTTTGCCTATGATCTTG
ACTCCTCCCTACAGAAATTTGATTGCTCAGGCACGTAATGGTTCTGGCAA
GACGACTTGTTTTGTGCTTGGGATGTTGAGCCGTGTTGATCCAAACCTCA
AGGCTCCACAAGCACTTTGCATTTGTCCTACCAGAGAATTGGCAATTCAG
AATTTGGAGGTTCTTCGTAAGATGGGGAAGCACACAGGGATAACTTCAGA
ATGTGCTGTGCCAACAGACAGCACCAATTATGTGCCAATATCAAAAAGGC
CACCAGTTACAGCACAAGTAGTGATTGGCACTCCTGGTACCATTAAGAAA
TGGATGTCAGCAAAGAAATTGGGTTTCAGTCGTTTGAAAATTCTTGTGTA
TGATGAGGCCGATCACATGCTTGATGAGGCTGGCTTTAGAGATGATTCTT
TGAGGATTATGAAGGACATTGAAAGAAGCAGTGGTCATTGCCAGGTTCTT
CTATTTTCAGCCACATTCAACGAAACTGTCAAGAATTTTGTAACAAGGAT
TTGTTAAAGATTATAATCAACTTTTTGTCAAGAAAAAAGAGTTGTCATTT
AAAATCAGTAAAGCAGTATAAAGTTTTACTGTCCCGACGAACTTGCCAAG
GTTATGGTAATCAGGGGAAAAATTTTTGGAACTGGGAAAAAAAAAGGGGC
AAAAAATTATATTTTTGCCCCACAAAAAAAATTGGAAAGCGCCTTGCCAA
AAACCCTTTAAAAAATTTGGGTTAAAAAAGCCCCAAAAATTTAGGGGGGG
CCAAAA
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