CX671592

Overview
NameCX671592
Unique NameCX671592
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length717
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671592 vs. ExPASy Swiss-Prot
Match: PSBP_SINAL (Oxygen-evolving enhancer protein 2, chloroplastic OS=Sinapis alba GN=PSBP PE=2 SV=2)

HSP 1 Score: 347.436 bits (890), Expect = 4.386e-95
Identity = 176/244 (72.13%), Postives = 210/244 (86.07%), Query Frame = 1
Query:    7 MASTQCFLHHHALSTTPARTS---SSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASVR----PPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGD 717
            MA + CFLH  AL+++ AR+S   SSQR+VS  K   +VC+AQ+    E+D S VSRRLALT+L+GAAAVGSKVSPADAAYGE+ANVFGKPK NTDF  Y+GDGF++ +P+KWNPS+E E+PGQVLRYEDNFD+ SN++V++TPTDKKSITDYGSPEEFLS+V+YLLGKQAY G+T+SEGGFD +AVATANILE +++     PYY+LSVLTRTADGDEGGKHQLITATV GGKLYICKAQAGD
Sbjct:    1 MAYSACFLHQSALASSTARSSPSSSSQRYVSISK---LVCKAQQ--THEEDNSTVSRRLALTLLVGAAAVGSKVSPADAAYGEAANVFGKPKKNTDFTAYSGDGFQVQVPAKWNPSREVEYPGQVLRYEDNFDATSNLNVMVTPTDKKSITDYGSPEEFLSQVNYLLGKQAYFGETASEGGFDNNAVATANILETNIQDVGGKPYYYLSVLTRTADGDEGGKHQLITATVNGGKLYICKAQAGD 239          
BLAST of CX671592 vs. ExPASy Swiss-Prot
Match: PSBP_BRAJU (Oxygen-evolving enhancer protein 2, chloroplastic (Fragment) OS=Brassica juncea GN=PSBP PE=2 SV=1)

HSP 1 Score: 317.005 bits (811), Expect = 6.349e-86
Identity = 154/196 (78.57%), Postives = 177/196 (90.31%), Query Frame = 1
Query:  142 EDDGSAVSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASVR----PPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGD 717
            EDD S VSRRLALT+L+GAAAVGSKVSPADAAYGE+ANVFGKPKTNTDF   NGDGF++ +P+KWNPS+E E+PGQVLRYEDNFD+ SN++V++TPTDKKSITDYGSPEEFLS+V+YLLGKQAY G+T+ EGGFD +AVATANILE +++     PYY+LSVLTRTAD DEGGKHQLITATV GGKLYICKAQAGD
Sbjct:    1 EDDTSTVSRRLALTLLVGAAAVGSKVSPADAAYGEAANVFGKPKTNTDFTAINGDGFQVQVPAKWNPSREVEYPGQVLRYEDNFDATSNLNVMVTPTDKKSITDYGSPEEFLSQVNYLLGKQAYFGETACEGGFDNNAVATANILETNIQDVGGKPYYYLSVLTRTADEDEGGKHQLITATVNGGKLYICKAQAGD 196          
BLAST of CX671592 vs. ExPASy Swiss-Prot
Match: PSBP_NARPS (Oxygen-evolving enhancer protein 2, chloroplastic OS=Narcissus pseudonarcissus GN=PSBP PE=2 SV=1)

HSP 1 Score: 316.235 bits (809), Expect = 1.083e-85
Identity = 167/251 (66.53%), Postives = 188/251 (74.90%), Query Frame = 1
Query:    7 MASTQCFLHHHA-------LSTTPARTS---SSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASV----RPPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGD 717
            MAST CFLHHHA       LS T + T+     Q H + ++  +  C  +  A+       +SRRLALT+LIG AA+GS+VS ADAAYGESANVFGKPKTNTDF    GDGFK+ IPSKWNPSKE EFPGQVLRYEDNFD+ SNV V++ PTDKKSI DYGSPE+FLS+VDYLLGKQAY GKT SEGGF+P+AV TANILE S        YY + VLTRTADGDEGGKH LITATV  GKLYICKAQAGD
Sbjct:    1 MASTACFLHHHAPSPATSNLSRTRSATNRDEQQQEHSARLQSPEADCATENDAL-------LSRRLALTILIGGAALGSRVSAADAAYGESANVFGKPKTNTDFQTVTGDGFKILIPSKWNPSKEVEFPGQVLRYEDNFDTTSNVGVMVNPTDKKSIKDYGSPEQFLSQVDYLLGKQAYFGKTISEGGFEPNAVRTANILETSTPVVGGKDYYSIHVLTRTADGDEGGKHLLITATVSDGKLYICKAQAGD 244          
BLAST of CX671592 vs. ExPASy Swiss-Prot
Match: PSBP_WHEAT (Oxygen-evolving enhancer protein 2, chloroplastic OS=Triticum aestivum GN=PSBP PE=2 SV=1)

HSP 1 Score: 304.294 bits (778), Expect = 4.258e-82
Identity = 159/240 (66.25%), Postives = 187/240 (77.92%), Query Frame = 1
Query:    7 MASTQCFLHHHALSTTPARTSSSQRHVSNIKPTQI-VCRAQKQAVQEDDGSAV-SRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASV----RPPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQ 708
            MAST CFLH      + AR ++S R    +  TQ+ VC+AQK      D + V SRR AL++L GAAA+  KVSPA AAYGE+ANVFGK K NTDF+ Y+G+GFKL IP+KWNPSKEREFPGQVLRYEDNFD+ SN+SVII PT KK+ITDYGSPEEFLS+V +LLG+Q+Y GKT SEGGF+ DAVATAN+LE+S        YY ++VLTRTADGDEGGKHQLITATV  GKLY+CKAQ
Sbjct:    1 MASTSCFLHQ-----STARLAASARPAPAVGRTQLFVCKAQKNDEAASDAAVVTSRRAALSLLAGAAAIAVKVSPAAAAYGEAANVFGKAKKNTDFVAYSGEGFKLMIPAKWNPSKEREFPGQVLRYEDNFDATSNLSVIINPTTKKTITDYGSPEEFLSQVGFLLGQQSYGGKTDSEGGFESDAVATANVLESSAPVVDGKQYYSITVLTRTADGDEGGKHQLITATVADGKLYVCKAQ 235          
BLAST of CX671592 vs. ExPASy Swiss-Prot
Match: PSBP_CHLRE (Oxygen-evolving enhancer protein 2, chloroplastic OS=Chlamydomonas reinhardtii GN=PSBP PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.353e-56
Identity = 125/243 (51.44%), Postives = 157/243 (64.61%), Query Frame = 1
Query:    7 MASTQCFLHHHALSTTPARTSSSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASVR-----PPYYFLSVLTRTADGDEGGKHQLITATV-KGGKLYICKAQAGD 717
            MA+  C   + A +  P    +S+R       + +V RA         GS VSRR AL    GAAA+ S  SPA+AAYG+SANVFGK    + F+PY GDGF L +P+KWNPSKE +FPG +LRYEDNFD+ +N+ VI   TDKK+I D+GS ++FL  V YLLGKQAYSG+T SEGGF P+ V+ A++L+ S         YY   +L R+ADGDEGG+HQLI ATV    KLYI K Q GD
Sbjct:    1 MATALC---NKAFAAAPVARPASRR-------SAVVVRAS--------GSDVSRRAALAGFAGAAALVSS-SPANAAYGDSANVFGKVTNKSGFVPYAGDGFALLLPAKWNPSKENDFPGVILRYEDNFDAVNNLVVIAQDTDKKAIADFGSQDKFLESVSYLLGKQAYSGETQSEGGFAPNRVSAASLLDVSTTTDKKGKTYYKYELLVRSADGDEGGRHQLIGATVGSDNKLYIIKIQIGD 224          
BLAST of CX671592 vs. ExPASy Swiss-Prot
Match: PSBP2_ARATH (Putative oxygen-evolving enhancer protein 2-2 OS=Arabidopsis thaliana GN=PSBP2 PE=5 SV=3)

HSP 1 Score: 167.933 bits (424), Expect = 4.763e-41
Identity = 84/104 (80.77%), Postives = 93/104 (89.42%), Query Frame = 1
Query:  418 IITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASVR----PPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGD 717
            +ITPTDKKSITDYGSPE+FLS+V+YLLGKQAY G+T+SEGGFD +AVATANILE S +      YY+LSVLTRTADGDEGGKHQLITATV GGKLYICKAQAGD
Sbjct:    1 MITPTDKKSITDYGSPEQFLSQVNYLLGKQAYVGETASEGGFDANAVATANILETSTQEIGGKEYYYLSVLTRTADGDEGGKHQLITATVNGGKLYICKAQAGD 104          
The following BLAST results are available for this feature:
BLAST of CX671592 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
PSBP_SINAL4.386e-9572.13Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_BRAJU6.349e-8678.57Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_NARPS1.083e-8566.53Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_WHEAT4.258e-8266.25Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_CHLRE2.353e-5651.44Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP2_ARATH4.763e-4180.77Putative oxygen-evolving enhancer protein 2-2 OS=A... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS10_12A07_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12A07-B14-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671592 ID=CX671592; Name=CX671592; organism=Citrus sinensis; type=EST; length=717bp
GAAAAAATGGCATCAACTCAATGCTTCTTGCACCACCATGCACTCTCTAC
TACACCAGCAAGAACATCATCATCTCAGCGCCACGTGTCGAACATCAAGC
CCACCCAGATTGTCTGCCGTGCGCAGAAGCAAGCTGTCCAAGAAGATGAC
GGCAGCGCCGTCTCCCGCCGTTTGGCTCTGACGGTGCTCATTGGTGCTGC
TGCCGTCGGCTCCAAGGTCTCTCCTGCCGACGCTGCCTACGGTGAATCAG
CCAATGTGTTTGGTAAGCCAAAGACCAACACTGACTTCTTGCCATACAAT
GGAGATGGATTCAAGCTGTCGATTCCCTCAAAATGGAACCCCAGCAAAGA
GAGAGAGTTCCCGGGTCAGGTTCTTAGATACGAAGACAACTTCGATTCCA
ACAGCAATGTCTCCGTCATAATCACCCCAACTGACAAGAAATCCATCACT
GACTACGGTTCCCCCGAGGAATTCCTCAGTAAGGTGGACTACTTGCTGGG
AAAACAAGCCTATTCCGGCAAAACTTCGTCTGAGGGTGGTTTCGACCCTG
ATGCTGTGGCAACAGCTAACATCTTGGAGGCTTCAGTCCGACCACCATAC
TACTTCTTGTCTGTATTAACAAGAACTGCTGATGGAGATGAAGGTGGCAA
GCATCAACTAATTACGGCCACGGTTAAAGGTGGCAAGCTTTACATCTGCA
AGGCACAAGCTGGAGAC
back to top