CX671587

Overview
NameCX671587
Unique NameCX671587
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length582
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671587 vs. ExPASy Swiss-Prot
Match: XTH33_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 33 OS=Arabidopsis thaliana GN=XTH33 PE=2 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 7.658e-27
Identity = 61/138 (44.20%), Postives = 86/138 (62.32%), Query Frame = 1
Query:  184 AHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENV---RDELDFEFLGNRTGQPYTVQTNIYANG--KGDREQRVNLWFDPAANYHLYTILWNHHHIVFYVDDVPIRVYKN 582
            AH  Q+ G  A +L LD++SG G  SK +Y +G  S ++KL  G ++G V AFY+ SN E      DE+D E LG      +T+QTN+YANG  +  RE++   WFDP   +H YT++WN HH VF VD++P+R + N
Sbjct:   53 AHNIQVNGSLA-KLTLDKSSGAGLVSKNKYHYGFFSARLKLPAGFASGVVVAFYL-SNAETYPKSHDEIDIELLGRSRRDDWTIQTNVYANGSTRTGREEKFYFWFDPTQAFHDYTLIWNSHHTVFLVDNIPVRQFPN 188          
BLAST of CX671587 vs. ExPASy Swiss-Prot
Match: XTH29_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 29 OS=Arabidopsis thaliana GN=XTH29 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.228e-26
Identity = 64/147 (43.54%), Postives = 88/147 (59.86%), Query Frame = 1
Query:  142 PATFLEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRD--ELDFEFLGNRTGQPYTVQTNIYANGKGDR--EQRVNLWFDPAANYHLYTILWNHHHIVFYVDDVPIR 570
            P  F E     + + +L +    R+++L+LD+ +G GF S   Y  G  S  IKL    +AG V AFY ++    V+D  ELD EFLGN  G+P+  QTN+Y NG  +R  E+R  LWFDP+  +H Y+ILW    I+F+VDDVPIR
Sbjct:   37 PIFFDEGLSHLFGEGNLIRSPDDRSVRLLLDKYTGSGFISSSMYQHGFFSSLIKLPGAYTAGIVVAFYTSNGDVFVKDHDELDIEFLGNLEGKPWRFQTNMYGNGSTNRGREERYRLWFDPSKEFHRYSILWTPTKIIFWVDDVPIR 183          
BLAST of CX671587 vs. ExPASy Swiss-Prot
Match: CRR1_YEAST (Probable glycosidase CRR1 OS=Saccharomyces cerevisiae GN=CRR1 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.831e-12
Identity = 49/136 (36.03%), Postives = 70/136 (51.47%), Query Frame = 1
Query:  154 LEDFKVTWSDAHLRQIEGGRAIQLVLDQNSGCGFASKRQYLFGRVSMKIKLVPGDSAGTVTAFYMNSNTENVRDELDFEFLGNRTGQPYTVQTNIYANGKGD--REQRVNLWFDPAANYHLYTILWNHHHIVFYVD 555
            LEDF  T S     +   G  +  +  + +G    S R +L+G+ S+++K     S G VTAF +   T  + DE+DFE+LG   G   T Q+N Y+ G  D  R QR  +  D  A YH Y I W+   I++YVD
Sbjct:  148 LEDFDFTHSGYTSIEASSGNIVLAMPKKTTGSLITSTRSFLYGKASVRMKTAR--SRGVVTAFDL---TSAIGDEIDFEWLG---GDLMTAQSNYYSQGHLDYTRMQRFPVGADTWATYHTYEIDWDPDRIIWYVD 275          
The following BLAST results are available for this feature:
BLAST of CX671587 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
XTH33_ARATH7.658e-2744.20Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH29_ARATH2.228e-2643.54Probable xyloglucan endotransglucosylase/hydrolase... [more]
CRR1_YEAST1.831e-1236.03Probable glycosidase CRR1 OS=Saccharomyces cerevis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_12A02_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-12A02-B4-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671587 ID=CX671587; Name=CX671587; organism=Citrus sinensis; type=EST; length=582bp
AATTAAAGTTCTCTTTCTAATTAGTAACAGATAATATTTTATTGTACGGC
TTGTTTTACAGCTATGGCTATCCTAAGAAATGCAATAGCATTATTTGTGT
TGCTTTACTGTCTTGTATCCTGCTCTTGCGTTTTAGGGCGACCGGCTACT
TTTCTTGAGGATTTTAAAGTCACATGGTCCGATGCCCATCTCAGGCAAAT
CGAGGGAGGGAGGGCCATCCAGCTAGTTCTAGACCAAAATTCAGGATGTG
GGTTTGCTTCCAAAAGGCAGTACTTGTTCGGGCGTGTAAGCATGAAGATC
AAGCTCGTTCCTGGAGACTCTGCTGGAACTGTCACTGCATTTTATATGAA
TTCCAACACCGAAAATGTGAGAGACGAGCTTGATTTTGAGTTCCTGGGAA
ACCGAACGGGTCAGCCTTACACGGTCCAGACCAATATCTATGCAAATGGA
AAAGGCGATAGAGAACAGAGAGTGAACCTCTGGTTTGACCCTGCTGCAAA
TTATCACCTTTACACTATTCTCTGGAACCATCACCATATTGTCTTCTATG
TGGATGATGTGCCCATCAGGGTTTACAAAAAC
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