CX671584

Overview
NameCX671584
Unique NameCX671584
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length805
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13335 contig Csv1_Contig13335:658..1462. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671584 vs. ExPASy Swiss-Prot
Match: PME37_ARATH (Probable pectinesterase/pectinesterase inhibitor VGDH2 OS=Arabidopsis thaliana GN=VGDH2 PE=2 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 2.697e-38
Identity = 84/204 (41.18%), Postives = 117/204 (57.35%), Query Frame = -1
Query:  197 LRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQG-RADPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDVIHPAGWHEWDGNFALNTLFYGEHQNAGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL 805
            LRV  D +  +NC    YQDTLYV++ RQF+ N +++GTVDFIFG +A V+QN  I  RK + GQ N VTA G         GIV+   RI    +L+  + +  +YLGRPWK+++ TVI+ + I D+I P GW EW G     T  Y E  N G GA T+ R  W   +V  SA E + +T  +++  ++W+     P  LGL
Sbjct:  387 LRVNGDRAVIFNCRFDGYQDTLYVNNGRQFYRNIVVSGTVDFIFGKSATVIQNSLILVRKGSPGQSNYVTADGNEKGAAMKIGIVLHNCRIIPDKELEADKLTIKSYLGRPWKKFATTVIIGTEIGDLIKPEGWTEWQGEQNHKTAKYIEFNNRGPGAATTQRPPW--VKVAKSAAEVETYTVANWVGPANWIQEANVPVQLGL 588          
BLAST of CX671584 vs. ExPASy Swiss-Prot
Match: PME56_ARATH (Probable pectinesterase 56 OS=Arabidopsis thaliana GN=PME56 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 8.675e-37
Identity = 72/133 (54.14%), Postives = 91/133 (68.42%), Query Frame = -1
Query:  407 LRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRADPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDVIHPAGW 805
            LR+  D++  Y C + AYQDTLY +S RQF+ +C I GTVDFIFG AAAV Q C I ARKP  GQ N++TAQ R +    +G   QK  I A+SDL P++G+  T+LGRPW+ +SR V M+S I DVI  AGW
Sbjct:  154 LRISTDMTIIYRCRIDAYQDTLYAYSGRQFYRDCYITGTVDFIFGRAAAVFQYCQIEARKPGIGQTNILTAQSREEDTATSGFSFQKCNISASSDLTPIKGTVKTFLGRPWRAFSRVVFMESFIDDVIDRAGW 286          
BLAST of CX671584 vs. ExPASy Swiss-Prot
Match: PME_BRACM (Pectinesterase/pectinesterase inhibitor (Fragment) OS=Brassica campestris PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 4.306e-36
Identity = 80/203 (39.41%), Postives = 115/203 (56.65%), Query Frame = -1
Query:  197 RVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRADPNQ-NTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDVIHPAGWHEWDGNFALNTLFYGEHQNAGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL 802
            RV  D +  +NC    YQDTLYV++ RQF+ N +++GTVDFI G +A V+QN  I  RK + GQ N VTA G+        GIV+   RI A  +L+  + +  +YLGRPWK ++ T ++ + I D+I P GW+EW G     T  Y E  N G GA  + RV W   ++  SA E + FT  +++  ++W+        LGL
Sbjct:  371 RVNGDRAVIFNCRFDGYQDTLYVNNGRQFYRNIVVSGTVDFINGKSATVIQNSLILCRKGSPGQTNHVTADGKQKGKAVKIGIVLHNCRIMADKELEADRLTVKSYLGRPWKPFATTAVIGTEIGDLIQPTGWNEWQGEKFHLTATYVEFNNRGPGANPAARVPWA--KMAKSAAEVERFTVANWLTPANWIQEANVTVQLGL 571          
BLAST of CX671584 vs. ExPASy Swiss-Prot
Match: PME53_ARATH (Probable pectinesterase 53 OS=Arabidopsis thaliana GN=PME53 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.211e-32
Identity = 78/192 (40.62%), Postives = 107/192 (55.73%), Query Frame = -1
Query:  230 LRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRADPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDVIHPAGWHEWDGNFALNTLFYGEHQNAGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWL 805
            LRV AD +AF+ C ML  QDTLY H  R ++ +C I G+VDFIFGNA ++ + C +HA     G    VTAQGR+   ++TG    K ++  T  L         YLGR W  +SR V   + + ++I P GW+ W       T+FYG+++  GAGA   GRV W   R +T   EA+ F   +FI GS W+
Sbjct:  205 LRVSADNAAFFGCRMLGAQDTLYDHLGRHYYKDCYIEGSVDFIFGNALSLYEGCHVHAIADKLG---AVTAQGRSSVLEDTGFSFVKCKVTGTGVL---------YLGRAWGPFSRVVFAYTYMDNIILPRGWYNWGDPSREMTVFYGQYKCTGAGANYGGRVAWA--RELTD-EEAKPFLSLTFIDGSEWI 381          
BLAST of CX671584 vs. ExPASy Swiss-Prot
Match: PME11_ARATH (Putative pectinesterase 11 OS=Arabidopsis thaliana GN=PME11 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.872e-31
Identity = 72/192 (37.50%), Postives = 102/192 (53.12%), Query Frame = -1
Query:  230 LRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRADPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDVIHPAGWHEWDGNFALNTLFYGEHQNAGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWL 805
            LRV AD +AFY C + +YQDTL   +   +F NC I G  DFI G+A+++ + C +H+  PN+G    +TAQ R    + +G      ++          GS  T+LGRPW  YSR V   S  ++V+ P GW++W  +   NT++YGE++  G GA    RV+W       S  EA  F    FI G  WL
Sbjct:  156 LRVAADKAAFYGCVITSYQDTLLDDNGNHYFKNCYIEGATDFICGSASSLYERCHLHSLSPNNGS---ITAQMRTSATEKSGFTFLGCKL---------TGSGSTFLGRPWGAYSRVVFAYSFFSNVVAPQGWNQWGDSTKENTVYYGEYKCYGPGADREQRVEWS---KQLSDEEATVFLSKDFIGGKDWL 332          
BLAST of CX671584 vs. ExPASy Swiss-Prot
Match: PME8_ARATH (Probable pectinesterase 8 OS=Arabidopsis thaliana GN=PME8 PE=2 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 4.039e-26
Identity = 70/197 (35.53%), Postives = 102/197 (51.78%), Query Frame = -1
Query:  230 LRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDI--HARKPNSGQK---NMVTAQGRADPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDVIHPAGWHEWDGNFALNTLFYGEHQNAGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWL 805
            +R+  D SAF  C     QDTL+    R +F +C I G++DFIFGNA ++ Q+C I   A + + G K     VTA GR+  ++N+G       IG T  +         +LGR W+ YSR V + +++TDVI P GW+ ++      T+FYGE+  +G GA  S R     +    + T+       SFI G  WL
Sbjct:  204 IRIAGDESAFVGCGFFGAQDTLHDDRGRHYFKDCYIQGSIDFIFGNAKSLYQDCRIISMANQLSPGSKAVNGAVTANGRSSKDENSGFSFVNCTIGGTGHV---------WLGRAWRPYSRVVFVSTTMTDVIAPEGWNNFNDPSRDATIFYGEYNCSGPGADMSKRAP---YVQKLNETQVALLINTSFIDGDQWL 388          
BLAST of CX671584 vs. ExPASy Swiss-Prot
Match: PME52_ARATH (Putative pectinesterase 52 OS=Arabidopsis thaliana GN=PME52 PE=2 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 4.039e-26
Identity = 67/197 (34.01%), Postives = 99/197 (50.25%), Query Frame = -1
Query:  224 LRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQK---NMVTAQGRADPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDVIHPAGWHEWDGNFALNTLFYGEHQNAGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGS 805
            + V  D SAFYNCD L  QDT++ +  R  F NC I G +DFIFG+  +V ++C I+A       K     +TAQGR+  +  +G V  +           V GS   YLGR +  +SR + +Q+ ++ V+HP GW+ W       +  Y E +  GAG+  S RV W     + S    Q F+  +FI    W+ +
Sbjct:  104 ISVYGDKSAFYNCDFLGLQDTVWDNLGRHHFKNCYIEGAIDFIFGSGQSVYEDCHINATAGALASKVSFGYITAQGRSSDSDPSGFVFLRG---------SVSGSTSVYLGRAYGPFSRVIFIQTDLSSVVHPEGWYSWHYGGYEMSFTYAEVECKGAGSDMSRRVPW--IDKLHSFYTKQQFSISNFIDQDQWISN 289          
BLAST of CX671584 vs. ExPASy Swiss-Prot
Match: PME62_ARATH (Pectinesterase QRT1 OS=Arabidopsis thaliana GN=QRT1 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.998e-26
Identity = 68/192 (35.42%), Postives = 90/192 (46.88%), Query Frame = -1
Query:  230 LRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRADPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDVIHPAGWHEWDGNFALNTLFYGEHQNAGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWL 805
            LR+  D + FY   +L  QDTL+  +   +F  C I G VDFIFGNA ++ Q+CDIH+     G    + A  R    ++TG       I  T  +         YLGR W  YSRTV     I D+I P GW +W        + +GE+   G GA   GRV W   + +T   E + F    FI G  WL
Sbjct:  202 LRIIGDKAVFYRVRVLGSQDTLFDDNGSHYFYQCYIQGNVDFIFGNAKSLYQDCDIHSTAKRYG---AIAAHHRDSETEDTGFSFVNCDISGTGQI---------YLGRAWGNYSRTVYSNCFIADIITPVGWSDWKHPERQRKVMFGEYNCRGRGAERGGRVPWS--KTLT-RDEVKPFLGREFIYGDQWL 378          
BLAST of CX671584 vs. ExPASy Swiss-Prot
Match: PME15_ARATH (Probable pectinesterase 15 OS=Arabidopsis thaliana GN=PME15 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.175e-25
Identity = 69/197 (35.03%), Postives = 96/197 (48.73%), Query Frame = -1
Query:  221 LRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIH--ARKPNSGQKNMVTAQGRADPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDVIHPAGWHEWDGNFALNTLFYGEHQNAGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGST 805
            LR+  D +AFY C     QDTL     R FF  C I G++DFIFGN  ++ Q+C I+  A+   SG    +TAQGR   ++ +G      +I          GS    LGR W  Y+  V   + ++ +I P GW+ W  +    T+ +GEH+  G GA    RV    F    + +EA +F   SFI G  WL  T
Sbjct:  204 LRIEGDQAAFYGCGFYGAQDTLLDDKGRHFFKECFIQGSIDFIFGNGRSLYQDCTINSIAKGNTSGVTGSITAQGRQSEDEQSGFSFVNCKI---------DGSGEILLGRAWGAYATVVFSNTYMSGIITPEGWNNWGDSTKEKTVTFGEHKCYGPGADYKERVL---FGKQLTDSEASSFIDVSFIDGDEWLRHT 388          
BLAST of CX671584 vs. ExPASy Swiss-Prot
Match: PME31_ARATH (Pectinesterase 31 OS=Arabidopsis thaliana GN=PME31 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.535e-25
Identity = 61/165 (36.97%), Postives = 88/165 (53.33%), Query Frame = -1
Query:  311 LRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRADPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDVIHPAGWHEWDGNFALNTLFYGEHQNAGAGAGTSGRVKW 805
            +RV AD  AFYNC  L +QDTLY+H  +Q+  +C I G+VDFIFGN+ A+L++C IH +      +  +TAQ R    ++TG V  +  I           S   YLGRPW  + R V+  + +   I   GWH W       +  + E++  G G+ +S RV W
Sbjct:  125 IRVTADRCAFYNCRFLGWQDTLYLHHGKQYLKDCYIEGSVDFIFGNSTALLEHCHIHCK-----SQGFITAQSRKSSQESTGYVFLRCVITGNGQ------SGYMYLGRPWGPFGRVVLAYTYMDACIRNVGWHNWGNAENERSACFYEYRCFGPGSCSSERVPW 278          
The following BLAST results are available for this feature:
BLAST of CX671584 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
PME37_ARATH2.697e-3841.18Probable pectinesterase/pectinesterase inhibitor V... [more]
PME56_ARATH8.675e-3754.14Probable pectinesterase 56 OS=Arabidopsis thaliana... [more]
PME_BRACM4.306e-3639.41Pectinesterase/pectinesterase inhibitor (Fragment)... [more]
PME53_ARATH2.211e-3240.63Probable pectinesterase 53 OS=Arabidopsis thaliana... [more]
PME11_ARATH1.872e-3137.50Putative pectinesterase 11 OS=Arabidopsis thaliana... [more]
PME8_ARATH4.039e-2635.53Probable pectinesterase 8 OS=Arabidopsis thaliana ... [more]
PME52_ARATH4.039e-2634.01Putative pectinesterase 52 OS=Arabidopsis thaliana... [more]
PME62_ARATH8.998e-2635.42Pectinesterase QRT1 OS=Arabidopsis thaliana GN=QRT... [more]
PME15_ARATH1.175e-2535.03Probable pectinesterase 15 OS=Arabidopsis thaliana... [more]
PME31_ARATH1.535e-2536.97Pectinesterase 31 OS=Arabidopsis thaliana GN=PME31... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS10_11H12_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11H12-P23-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671584 ID=CX671584; Name=CX671584; organism=Citrus sinensis; type=EST; length=805bp
TTTTTTTTTTAATTTAAAGAAGCCGGAAATTATTATTCTTCCCATGCTAT
TTTATTTCTTGTTAATCACACAATAGTATTTGTGAAATCGAAGCCACGAA
TAAGACACGCTCAATCAAATATTACAAATTGAAAGACCAGAGACCTATGG
ATCCACTAATACAAAACATATTAATTAAAACTCCTAGTGAATATTACAAA
CCAAGGGAGAATGGGAAACCAGTGGAGCCCAGCCAGCTACTACCAGCAAT
GAAGCTTCCAGGAGTAAAAGCTTGAGCCTCGGTAGCACTTGTAATAACCC
TAAATCCCTTCCATTTCACTCTCCCTGAAGTTCCGGCACCGGCTCCGGCG
TTCTGATGCTCTCCGTAAAACAATGTGTTCAACGCGAAGTTACCATCCCA
CTCGTGCCACCCGGCAGGGTGGATCACGTCAGTAATCGATGACTGCATGA
TCACCGTCCTCGAGTACTCCTTCCAGGGCCTGCCGAGGTACGTCGGGAAA
CTACCCTGAACCGGTTTTAAATCGGAGGTGGCACCAATCCTAGATTTTTG
AATGACAATGCCGGTGTTTTGGTTAGGGTCAGCCCTGCCTTGGGCTGTGA
CCATATTTTTTTGGCCGGAATTGGGCTTTCGTGCATGGATGTCACAATTT
TGTAACACGGCTGCAGCGTTACCAAAAATAAAATCAACCGTGCCAGCAAT
TAAGCAGTTCACAAAGAACTGGCGGTTCGAGTGGACGTAGAGTGTGTCTT
GGTAAGCTAACATATCGCAATTGTAAAATGCTGAAAGGTCAGCTCCCACT
CGTAG
back to top