EY664431

Overview
NameEY664431
Unique NameEY664431
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length756
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY664431 vs. ExPASy Swiss-Prot
Match: XTH28_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 28 OS=Arabidopsis thaliana GN=XTH28 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.755e-18
Identity = 49/141 (34.75%), Postives = 72/141 (51.06%), Query Frame = 3
Query:   15 YHLYTILWNHHHIVFYVDDVPIRVYKNSGR--APFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRDFDIEGCPVPGPANCASNPGNWWEANNYQA-LTAMEARRYRWVRLNHMIYDYCTDKSRYPVPPPECL 428
            +H Y+ILW+  HI+FYVD+VPIR  K +      FP  +PM +YST+W+   WAT GG   +++  AP+ + + D  + GC V       S      +     + +T  +  +    R  HM Y YC D  RY V   EC+
Sbjct:  152 FHQYSILWSLSHIIFYVDNVPIREVKRTASMGGDFPA-KPMSLYSTIWDGSKWATDGGKYGVNYKYAPYVSQFTDLILHGCAVDPTEKFPSCKDEAVQNLRLASEITESQRNKMEIFRQKHMTYSYCYDHMRYKVVLSECV 291          
BLAST of EY664431 vs. ExPASy Swiss-Prot
Match: XTH11_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 11 OS=Arabidopsis thaliana GN=XTH11 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.407e-16
Identity = 50/139 (35.97%), Postives = 72/139 (51.80%), Query Frame = 3
Query:   15 YHLYTILWNHHHIVFYVDDVPIRVYKNSGRAPFPMNQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYRDFDIEGCPVP--GPANCASNPGNWWEANNYQALTAMEARRYRWVRLNHMIYDYCTDKSRYPVPPPEC 425
            YH Y+ LWN + +VFYVDD PIRVY  +    +P  Q M +  ++         G +  ID  + P+ A ++   IEGC     G   C ++P  WW   N + L++ E   Y   R  ++ YDYC+D+ RYP  P EC
Sbjct:  138 YHSYSFLWNPNQLVFYVDDTPIRVYSKNPDVYYPSVQTMFLMGSV-------QNGSI--IDPKQMPYIAKFQASKIEGCKTEFMGIDKC-TDPKFWW---NRKQLSSKEKTLYLNARKTYLDYDYCSDRQRYPKVPQEC 263          
The following BLAST results are available for this feature:
BLAST of EY664431 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
XTH28_ARATH4.755e-1834.75Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH11_ARATH3.407e-1635.97Probable xyloglucan endotransglucosylase/hydrolase... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-066-E07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664431 ID=EY664431; Name=EY664431; organism=Citrus sinensis; type=EST; length=756bp
CCACGCGTCCGGNTTATCACCTTTACACTATTCTCTGGAACCATCACCAT
ATTGTCTTCTATGTGGATGATGTGCCCATCAGGGTTTACAAAAACAGTGG
AAGGGCTCCATTTCCAATGAACCAACCCATGGGGGTGTATTCGACGCTGT
GGGAAGCAGATGACTGGGCAACAAGAGGTGGTCTAGAGAAAATAGATTGG
AGCAAAGCTCCTTTTTATGCTTATTACAGAGACTTTGATATTGAGGGCTG
CCCAGTTCCTGGACCAGCAAACTGTGCCTCGAACCCAGGTAACTGGTGGG
AGGCAAATAATTATCAAGCCCTCACCGCCATGGAAGCAAGAAGATACAGA
TGGGTTCGTCTCAACCACATGATCTATGATTATTGCACTGATAAATCAAG
ATACCCAGTACCCCCACCGGAATGCCTTGCCGGCATATAAATTCAACCCG
CCAATTAATTAAGCAGTTGGACGGTACTCCATATCCGTATCATATCATGT
ATATTACTTCACGTACACGTNCTTTGTATTATTCCCTATTCGTGTGAAAA
GACTTATACGCATATCAAGGGAGGGGGCAGGAGGAAAATAAACATTGTGT
GCTTTTAAATGTGATTATGGGAGTGGGAAATATGTGGGTATTCTGCTCCG
CTTGTACCATATATAAGTCTGAATTTGATGCACAGTATTCTGGGCCAATA
AAAGCCTCTTCATAATTGTGAAAAAAAAAAAAAAAAAAAAAGGCGGGCCG
TTTTAA
back to top