CX671582

Overview
NameCX671582
Unique NameCX671582
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length778
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: GGM13_GNEGN (MADS-box protein GGM13 OS=Gnetum gnemon GN=GGM13 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 8.184e-29
Identity = 76/158 (48.10%), Postives = 100/158 (63.29%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFE--SSSSSMKDIIARY-NMHSSNISKLNHPSLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERK 660
            M R KI+I++I+N T RQVTFSKRR GL KKA ELSVLCDAE+G+IIFS++GKLFE  S+SSSMK II RY  +  + I++ ++  L  ++   K      E       +R+M GEDL  LT+ EL HL   LE   SRV   K   ++ ++  L RK
Sbjct:    1 MGRGKIEIKRIENTTNRQVTFSKRRGGLLKKAHELSVLCDAELGLIIFSSSGKLFEYSSASSSMKKIIERYQKVSGARITEYDNQHLYCEMTRMK-----NENEKLQTNIRRMMGEDLTSLTMTELHHLGQQLESASSRVRSRKNQLMLQQLENLRRK 153          
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: MAD25_ORYSJ (MADS-box transcription factor 25 OS=Oryza sativa subsp. japonica GN=MADS25 PE=2 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.823e-28
Identity = 66/157 (42.04%), Postives = 95/157 (60.51%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYNMHSSNISKLNHPSLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGA 666
            M R KI I++IDN   RQVTFSKRR GL KKA EL++LCDA+VG+I+FS TG+L++ SSSSMK II RY        +L +P  E +    +  +L +++ +     RQ+ GE++   T+ +LQ L+  +E  L  +   K   +  EI  L  KG+
Sbjct:    1 MGRGKIAIKRIDNTMNRQVTFSKRRGGLMKKARELAILCDADVGLIVFSCTGRLYDFSSSSMKSIIERYQEAGEEHCRLLNPMSEAKFWQREVTTLRQQVQNLHHNNRQLLGEEISNFTVRDLQLLQNQVEMSLHSIRNKKDQLLAEEILKLNEKGS 157          
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: AG_PANGI (Floral homeotic protein AGAMOUS OS=Panax ginseng GN=AG2 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.543e-27
Identity = 71/159 (44.65%), Postives = 102/159 (64.15%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYN---MHSSNISKLNHPSLEL-QLENSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERK 660
            + R KI+I++I+N T RQVTF KRR GL KKA ELSVLCDAEV +I+FS  G+L+E +++S+K  I RY      S N S ++  + +  Q E SK   L +EI+   +  R M GE L  LT+ +L+ LET LE+G+SR+   K + +  EI  +++K
Sbjct:   17 LGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVKGTIERYKKACTDSPNTSSVSEANAQFYQQEASK---LRQEISSIQKNNRNMMGESLGSLTVRDLKGLETKLEKGISRIRSKKNELLFAEIEYMQKK 172          
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: MAD18_ORYSJ (MADS-box transcription factor 18 OS=Oryza sativa subsp. japonica GN=MADS18 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.965e-26
Identity = 71/158 (44.94%), Postives = 97/158 (61.39%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFE-SSSSSMKDIIARYNMHSSNISKLNHPSLELQLEN--SKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERK 660
            M R  +++R+I+N   RQVTFSKRR GL KKA E+SVLCDA+V +I+FS  GKL+E SS SSM+ I+ RY  +S +   +  P+ E Q EN   +Y  L  ++    +  RQ+ GE L  LTI+ELQ LE  LE  L  +   K   +   IS L++K
Sbjct:    1 MGRGPVQLRRIENKINRQVTFSKRRNGLLKKAHEISVLCDADVALIVFSTKGKLYEFSSHSSMEGILERYQRYSFDERAVLEPNTEDQ-ENWGDEYGILKSKLDALQKSQRQLLGEQLDTLTIKELQQLEHQLEYSLKHIRSKKNQLLFESISELQKK 157          
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: MAD18_ORYSI (MADS-box transcription factor 18 OS=Oryza sativa subsp. indica GN=MADS18 PE=2 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 4.965e-26
Identity = 71/158 (44.94%), Postives = 97/158 (61.39%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFE-SSSSSMKDIIARYNMHSSNISKLNHPSLELQLEN--SKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERK 660
            M R  +++R+I+N   RQVTFSKRR GL KKA E+SVLCDA+V +I+FS  GKL+E SS SSM+ I+ RY  +S +   +  P+ E Q EN   +Y  L  ++    +  RQ+ GE L  LTI+ELQ LE  LE  L  +   K   +   IS L++K
Sbjct:    1 MGRGPVQLRRIENKINRQVTFSKRRNGLLKKAHEISVLCDADVALIVFSTKGKLYEFSSHSSMEGILERYQRYSFDERAVLEPNTEDQ-ENWGDEYGILKSKLDALQKSQRQLLGEQLDTLTIKELQQLEHQLEYSLKHIRSKKNQLLFESISELQKK 157          
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: TT16_ARATH (Protein TRANSPARENT TESTA 16 OS=Arabidopsis thaliana GN=TT16 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.469e-26
Identity = 69/157 (43.95%), Postives = 95/157 (60.51%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFE--SSSSSMKDIIARYNMHSSNISKLNHPSLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERK 660
            M R KI+I+KI+N TARQVTFSKRR GL KK  ELS+LCDA +G+I+FSATGKL E  S  + M  +I RY +H++ +   +H   + QL +   L L RE  +   +LR   G DL  +   EL  LE  LE  + +V + K + +  ++  L RK
Sbjct:    1 MGRGKIEIKKIENQTARQVTFSKRRTGLIKKTRELSILCDAHIGLIVFSATGKLSEFCSEQNRMPQLIDRY-LHTNGLRLPDHHDDQEQLHHEMEL-LRRETCNLELRLRPFHGHDLASIPPNELDGLERQLEHSVLKVRERKNELMQQQLENLSRK 155          
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: AGL1_ARATH (Agamous-like MADS-box protein AGL1 OS=Arabidopsis thaliana GN=AGL1 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.469e-26
Identity = 67/158 (42.41%), Postives = 99/158 (62.66%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYNMHSSNISKLNHPSL---ELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERK 660
            + R KI+I++I+N T RQVTF KRR GL KKA ELSVLCDAEV ++IFS  G+L+E +++S++  I RY    S+   +N PS+     Q    +   L R+I D     R + GE L  L  +EL++LE  LE+G+SRV   K + ++ EI  ++++
Sbjct:   16 LGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYANNSVRGTIERYKKACSD--AVNPPSVTEANTQYYQQEASKLRRQIRDIQNSNRHIVGESLGSLNFKELKNLEGRLEKGISRVRSKKNELLVAEIEYMQKR 171          
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: AGL15_ARATH (Agamous-like MADS-box protein AGL15 OS=Arabidopsis thaliana GN=AGL15 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.469e-26
Identity = 68/150 (45.33%), Postives = 94/150 (62.67%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYNMH-SSNISKLNHPSLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEI 642
            M R KI+I++I+N  +RQVTFSKRR GL KKA ELSVLCDAEV VI+FS +GKLFE SS+ MK  ++RY  H SS+ SK      E+ +       L  +++    +  Q++G+ L+ LT +ELQ LE  L   L  V + K   + N++
Sbjct:    1 MGRGKIEIKRIENANSRQVTFSKRRSGLLKKARELSVLCDAEVAVIVFSKSGKLFEYSSTGMKQTLSRYGNHQSSSASKAEEDCAEVDI-------LKDQLSKLQEKHLQLQGKGLNPLTFKELQSLEQQLYHALITVRERKERLLTNQL 143          
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: CMB1_DIACA (MADS-box protein CMB1 OS=Dianthus caryophyllus GN=CMB1 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.106e-25
Identity = 66/179 (36.87%), Postives = 102/179 (56.98%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFE-SSSSSMKDIIARYNMHSSNISKLNHPSLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAXXXXXXXXXXQKVASSCKGKR 729
            M R ++++++I+N   RQVTF+KRR GL KKA ELSVLCDAEV +I+FS  GKL+E  S+S M   + RY   S    + + PS E +    +YL L  ++    R  R + GEDL  L+ +EL+ LE  L++ L ++   K   ++++++ L++K             K+  SC   R
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCSTSCMNKTLERYQRCSYGSLETSQPSKETESSYQEYLKLKAKVDVLQRSHRNLLGEDLGELSTKELEQLEHQLDKSLRQIRSIKTQHMLDQLADLQKKEEMLFESNRALKTKLEESCASFR 179          
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSJ (MADS-box transcription factor 5 OS=Oryza sativa subsp. japonica GN=MADS5 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.445e-25
Identity = 66/158 (41.77%), Postives = 100/158 (63.29%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFE-SSSSSMKDIIARYNMHSSNISKLN-HPSLELQLEN-SKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERK 660
            M R K+++++I+N  +RQVTF+KRR GL KKA ELSVLCDAEV +IIFS  G+LFE S+SS M   + RY   + N++      +LE +L N  +YL L   +       R + GEDL  L+++EL+ LE  +E  L  +  +K  ++++++  L+RK
Sbjct:    1 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGRLFEFSTSSCMYKTLERYRSCNYNLNSCEASAALETELSNYQEYLKLKTRVEFLQTTQRNLLGEDLVPLSLKELEQLENQIEISLMNIRSSKNQQLLDQVFELKRK 158          
The following BLAST results are available for this feature:
BLAST of CX671582 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
GGM13_GNEGN8.184e-2948.10MADS-box protein GGM13 OS=Gnetum gnemon GN=GGM13 P... [more]
MAD25_ORYSJ1.823e-2842.04MADS-box transcription factor 25 OS=Oryza sativa s... [more]
AG_PANGI1.543e-2744.65Floral homeotic protein AGAMOUS OS=Panax ginseng G... [more]
MAD18_ORYSJ4.965e-2644.94MADS-box transcription factor 18 OS=Oryza sativa s... [more]
MAD18_ORYSI4.965e-2644.94MADS-box transcription factor 18 OS=Oryza sativa s... [more]
TT16_ARATH8.469e-2643.95Protein TRANSPARENT TESTA 16 OS=Arabidopsis thalia... [more]
AGL1_ARATH8.469e-2642.41Agamous-like MADS-box protein AGL1 OS=Arabidopsis ... [more]
AGL15_ARATH8.469e-2645.33Agamous-like MADS-box protein AGL15 OS=Arabidopsis... [more]
CMB1_DIACA1.106e-2536.87MADS-box protein CMB1 OS=Dianthus caryophyllus GN=... [more]
MADS5_ORYSJ1.445e-2541.77MADS-box transcription factor 5 OS=Oryza sativa su... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_11H10_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11H10-P19-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671582 ID=CX671582; Name=CX671582; organism=Citrus sinensis; type=EST; length=778bp
ATAAAGAAAAAGAAATTGAAGATACTGTTTTGCTATAAAAGGGAAGGCAA
CCTTTCCTTTCTCGAACACACAATCCAAGTCTGTCTCTCCGTCTCTATTT
CTTCTCACTTTCTGTAATTGGTGGCTTTAGGTTACTGTGATCAGTCCTGA
ACCAGGCCTCCTATTAGGTAAATACCATATATACATATATAGATTATGGC
GAGAGAGAAGATCAAGATCAGGAAGATTGATAACATAACAGCGAGACAAG
TGACTTTCTCAAAGAGAAGACGAGGCCTTTTCAAGAAAGCAGAAGAGCTT
TCTGTTCTTTGTGATGCTGAGGTTGGAGTCATCATTTTCTCTGCTACTGG
CAAGCTCTTTGAGTCCTCCAGCTCCAGCATGAAGGACATAATTGCAAGGT
ACAACATGCATTCAAGTAACATCAGCAAATTGAATCATCCATCTCTTGAA
CTGCAGTTGGAGAATAGCAAGTATCTCAGTTTGAGCAGGGAAATTGCTGA
TAAGAGCCGTCAACTAAGGCAGATGAGAGGAGAGGATCTTCATGGATTGA
CTATTGAGGAACTCCAGCACCTTGAAACAATGCTTGAACAGGGACTTAGC
CGTGTGCTCCAGACAAAGGGTGACCGGATTATGAATGAGATCTCTACACT
TGAAAGGAAGGGAGCTAAGCTGCTGGAGGAGAACAAGAATCTAAAGCAGA
AGGTGGCCTCCTCGTGCAAGGGAAAAAGAGTTGTTTTAGTGGATTCAGAT
ATTGCTATCCAAGAAGAAGGCATGTCAT
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