CX671582

Overview
NameCX671582
Unique NameCX671582
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length778
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: MEF2C_MOUSE (Myocyte-specific enhancer factor 2C OS=Mus musculus GN=Mef2c PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.820e-13
Identity = 36/73 (49.32%), Postives = 54/73 (73.97%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYNMHS 414
            M R+KI+I +I +   RQVTF+KR+ GL KKA ELSVLCD E+ +IIF++T KLF+ +S+ M  ++ +Y  ++
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYASTDMDKVLLKYTEYN 73          
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: MEF2C_HUMAN (Myocyte-specific enhancer factor 2C OS=Homo sapiens GN=MEF2C PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.820e-13
Identity = 36/73 (49.32%), Postives = 54/73 (73.97%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYNMHS 414
            M R+KI+I +I +   RQVTF+KR+ GL KKA ELSVLCD E+ +IIF++T KLF+ +S+ M  ++ +Y  ++
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYASTDMDKVLLKYTEYN 73          
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: MEF2C_BOVIN (Myocyte-specific enhancer factor 2C OS=Bos taurus GN=MEF2C PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.820e-13
Identity = 36/73 (49.32%), Postives = 54/73 (73.97%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYNMHS 414
            M R+KI+I +I +   RQVTF+KR+ GL KKA ELSVLCD E+ +IIF++T KLF+ +S+ M  ++ +Y  ++
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYASTDMDKVLLKYTEYN 73          
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: MEF2_DROME (Myocyte-specific enhancer factor 2 OS=Drosophila melanogaster GN=Mef2 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.074e-12
Identity = 37/90 (41.11%), Postives = 62/90 (68.89%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYNMHSSNISKLNHPSLELQLEN 465
            M R+KI+I +I +   RQVTF+KR+ G+ KKA ELSVLCD E+ +IIFS++ KL++ +S+ M  ++ +Y  ++     L + ++ ++ EN
Sbjct:    1 MGRKKIQISRITDERNRQVTFNKRKFGVMKKAYELSVLCDCEIALIIFSSSNKLYQYASTDMDRVLLKYTEYNEPHESLTNKNI-IEKEN 89          
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: MEF2D_XENLA (Myocyte-specific enhancer factor 2D homolog OS=Xenopus laevis GN=mef2d PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.074e-12
Identity = 35/73 (47.95%), Postives = 54/73 (73.97%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYNMHS 414
            M R+KI+I++I +   RQVTF+KR+ GL KKA ELSVLCD E+ +IIF+ + KLF+ +S+ M  ++ +Y  ++
Sbjct:    1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYASTDMDKVLLKYTEYN 73          
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: MEF2D_RAT (Myocyte-specific enhancer factor 2D OS=Rattus norvegicus GN=Mef2d PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.074e-12
Identity = 35/73 (47.95%), Postives = 54/73 (73.97%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYNMHS 414
            M R+KI+I++I +   RQVTF+KR+ GL KKA ELSVLCD E+ +IIF+ + KLF+ +S+ M  ++ +Y  ++
Sbjct:    1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYASTDMDKVLLKYTEYN 73          
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: MEF2D_MOUSE (Myocyte-specific enhancer factor 2D OS=Mus musculus GN=Mef2d PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.074e-12
Identity = 35/73 (47.95%), Postives = 54/73 (73.97%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYNMHS 414
            M R+KI+I++I +   RQVTF+KR+ GL KKA ELSVLCD E+ +IIF+ + KLF+ +S+ M  ++ +Y  ++
Sbjct:    1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYASTDMDKVLLKYTEYN 73          
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: MEF2D_HUMAN (Myocyte-specific enhancer factor 2D OS=Homo sapiens GN=MEF2D PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.074e-12
Identity = 35/73 (47.95%), Postives = 54/73 (73.97%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYNMHS 414
            M R+KI+I++I +   RQVTF+KR+ GL KKA ELSVLCD E+ +IIF+ + KLF+ +S+ M  ++ +Y  ++
Sbjct:    1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYASTDMDKVLLKYTEYN 73          
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: MEF2A_XENLA (Myocyte-specific enhancer factor 2A homolog OS=Xenopus laevis GN=mef2a PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.402e-12
Identity = 35/73 (47.95%), Postives = 54/73 (73.97%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYNMHS 414
            M R+KI+I +I +   RQVTF+KR+ GL KKA ELSVLCD E+ +IIF+++ KLF+ +S+ M  ++ +Y  ++
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYN 73          
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: MEF2A_RAT (Myocyte-specific enhancer factor 2A OS=Rattus norvegicus GN=Mef2a PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.402e-12
Identity = 35/73 (47.95%), Postives = 54/73 (73.97%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYNMHS 414
            M R+KI+I +I +   RQVTF+KR+ GL KKA ELSVLCD E+ +IIF+++ KLF+ +S+ M  ++ +Y  ++
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYN 73          
The following BLAST results are available for this feature:
BLAST of CX671582 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
MEF2C_MOUSE4.820e-1349.32Myocyte-specific enhancer factor 2C OS=Mus musculu... [more]
MEF2C_HUMAN4.820e-1349.32Myocyte-specific enhancer factor 2C OS=Homo sapien... [more]
MEF2C_BOVIN4.820e-1349.32Myocyte-specific enhancer factor 2C OS=Bos taurus ... [more]
MEF2_DROME1.074e-1241.11Myocyte-specific enhancer factor 2 OS=Drosophila m... [more]
MEF2D_XENLA1.074e-1247.95Myocyte-specific enhancer factor 2D homolog OS=Xen... [more]
MEF2D_RAT1.074e-1247.95Myocyte-specific enhancer factor 2D OS=Rattus norv... [more]
MEF2D_MOUSE1.074e-1247.95Myocyte-specific enhancer factor 2D OS=Mus musculu... [more]
MEF2D_HUMAN1.074e-1247.95Myocyte-specific enhancer factor 2D OS=Homo sapien... [more]
MEF2A_XENLA1.402e-1247.95Myocyte-specific enhancer factor 2A homolog OS=Xen... [more]
MEF2A_RAT1.402e-1247.95Myocyte-specific enhancer factor 2A OS=Rattus norv... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_11H10_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11H10-P19-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671582 ID=CX671582; Name=CX671582; organism=Citrus sinensis; type=EST; length=778bp
ATAAAGAAAAAGAAATTGAAGATACTGTTTTGCTATAAAAGGGAAGGCAA
CCTTTCCTTTCTCGAACACACAATCCAAGTCTGTCTCTCCGTCTCTATTT
CTTCTCACTTTCTGTAATTGGTGGCTTTAGGTTACTGTGATCAGTCCTGA
ACCAGGCCTCCTATTAGGTAAATACCATATATACATATATAGATTATGGC
GAGAGAGAAGATCAAGATCAGGAAGATTGATAACATAACAGCGAGACAAG
TGACTTTCTCAAAGAGAAGACGAGGCCTTTTCAAGAAAGCAGAAGAGCTT
TCTGTTCTTTGTGATGCTGAGGTTGGAGTCATCATTTTCTCTGCTACTGG
CAAGCTCTTTGAGTCCTCCAGCTCCAGCATGAAGGACATAATTGCAAGGT
ACAACATGCATTCAAGTAACATCAGCAAATTGAATCATCCATCTCTTGAA
CTGCAGTTGGAGAATAGCAAGTATCTCAGTTTGAGCAGGGAAATTGCTGA
TAAGAGCCGTCAACTAAGGCAGATGAGAGGAGAGGATCTTCATGGATTGA
CTATTGAGGAACTCCAGCACCTTGAAACAATGCTTGAACAGGGACTTAGC
CGTGTGCTCCAGACAAAGGGTGACCGGATTATGAATGAGATCTCTACACT
TGAAAGGAAGGGAGCTAAGCTGCTGGAGGAGAACAAGAATCTAAAGCAGA
AGGTGGCCTCCTCGTGCAAGGGAAAAAGAGTTGTTTTAGTGGATTCAGAT
ATTGCTATCCAAGAAGAAGGCATGTCAT
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