CX671582

Overview
NameCX671582
Unique NameCX671582
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length778
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: MEF2A_PONAB (Myocyte-specific enhancer factor 2A OS=Pongo abelii GN=MEF2A PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.402e-12
Identity = 35/73 (47.95%), Postives = 54/73 (73.97%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYNMHS 414
            M R+KI+I +I +   RQVTF+KR+ GL KKA ELSVLCD E+ +IIF+++ KLF+ +S+ M  ++ +Y  ++
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYN 73          
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: MEF2A_PIG (Myocyte-specific enhancer factor 2A OS=Sus scrofa GN=MEF2A PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.402e-12
Identity = 35/73 (47.95%), Postives = 54/73 (73.97%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYNMHS 414
            M R+KI+I +I +   RQVTF+KR+ GL KKA ELSVLCD E+ +IIF+++ KLF+ +S+ M  ++ +Y  ++
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYN 73          
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: MEF2A_MOUSE (Myocyte-specific enhancer factor 2A OS=Mus musculus GN=Mef2a PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.402e-12
Identity = 35/73 (47.95%), Postives = 54/73 (73.97%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYNMHS 414
            M R+KI+I +I +   RQVTF+KR+ GL KKA ELSVLCD E+ +IIF+++ KLF+ +S+ M  ++ +Y  ++
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYN 73          
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: MEF2A_HUMAN (Myocyte-specific enhancer factor 2A OS=Homo sapiens GN=MEF2A PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.402e-12
Identity = 35/73 (47.95%), Postives = 54/73 (73.97%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYNMHS 414
            M R+KI+I +I +   RQVTF+KR+ GL KKA ELSVLCD E+ +IIF+++ KLF+ +S+ M  ++ +Y  ++
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYN 73          
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: MEF2A_CHICK (Myocyte-specific enhancer factor 2A OS=Gallus gallus GN=MEF2A PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.402e-12
Identity = 35/73 (47.95%), Postives = 54/73 (73.97%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYNMHS 414
            M R+KI+I +I +   RQVTF+KR+ GL KKA ELSVLCD E+ +IIF+++ KLF+ +S+ M  ++ +Y  ++
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYN 73          
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: MEF2A_BOVIN (Myocyte-specific enhancer factor 2A OS=Bos taurus GN=MEF2A PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.402e-12
Identity = 35/73 (47.95%), Postives = 54/73 (73.97%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYNMHS 414
            M R+KI+I +I +   RQVTF+KR+ GL KKA ELSVLCD E+ +IIF+++ KLF+ +S+ M  ++ +Y  ++
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYN 73          
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: MEF2B_HUMAN (Myocyte-specific enhancer factor 2B OS=Homo sapiens GN=MEF2B PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.392e-12
Identity = 39/86 (45.35%), Postives = 59/86 (68.60%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYNMHSS-NISKLNHPSLE 450
            M R+KI+I +I +   RQVTF+KR+ GL KKA ELSVLCD E+ +IIF++  +LF+ +S+ M  ++ +Y  +S  + S+ N   LE
Sbjct:    1 MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYASTDMDRVLLKYTEYSEPHESRTNTDILE 86          
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: MEF2B_MOUSE (Myocyte-specific enhancer factor 2B OS=Mus musculus GN=Mef2b PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.329e-12
Identity = 35/73 (47.95%), Postives = 53/73 (72.60%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYNMHS 414
            M R+KI+I +I +   RQVTF+KR+ GL KKA ELSVLCD ++ +IIF++  +LF+ +SS M  ++ +Y  +S
Sbjct:    1 MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCDIALIIFNSAQRLFQYASSDMDRVLLKYTEYS 73          
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: RLM1_YEAST (Transcription factor RLM1 OS=Saccharomyces cerevisiae GN=RLM1 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.025e-11
Identity = 37/104 (35.58%), Postives = 58/104 (55.77%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYNMHSSNISKLNHPSLELQLENSKYLSLSREIADKS 507
            M R KI+I++I +   R VTF KR+ GLFKKA ELSVLC  ++ VII  +    +E SS    D+I  Y    + + ++  PS       S  +++++++   S
Sbjct:    1 MGRRKIEIQRISDDRNRAVTFIKRKAGLFKKAHELSVLCQVDIAVIILGSNNTFYEFSSVDTNDLIYHYQNDKNLLHEVKDPSDYGDFHKSASVNINQDLLRSS 104          
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: AGL62_ARATH (Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana GN=AGL62 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.645e-11
Identity = 52/164 (31.71%), Postives = 84/164 (51.22%), Query Frame = 1
Query:  202 REKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARY------------NM------HSSNISKLNHPSL----ELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDR 627
            R+KI++ K+ N +  QVTFSKRR GLFKKA EL  LC AEV +++FS   K+F     ++  +I R+            NM       +S +  LN+       +L+ E  KY  L ++I +K++ L     + +  L + +L+  +  LE  L +V+  +  R
Sbjct:    8 RQKIEMVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVFSFGHPNVDSVIDRFINNNPLPPHQHNNMQLRETRRNSIVQDLNNHLTQVLSQLETEKKKYDEL-KKIREKTKALGNWWEDPVEELALSQLEGFKGNLE-NLKKVVTVEASR 169          
The following BLAST results are available for this feature:
BLAST of CX671582 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
MEF2A_PONAB1.402e-1247.95Myocyte-specific enhancer factor 2A OS=Pongo abeli... [more]
MEF2A_PIG1.402e-1247.95Myocyte-specific enhancer factor 2A OS=Sus scrofa ... [more]
MEF2A_MOUSE1.402e-1247.95Myocyte-specific enhancer factor 2A OS=Mus musculu... [more]
MEF2A_HUMAN1.402e-1247.95Myocyte-specific enhancer factor 2A OS=Homo sapien... [more]
MEF2A_CHICK1.402e-1247.95Myocyte-specific enhancer factor 2A OS=Gallus gall... [more]
MEF2A_BOVIN1.402e-1247.95Myocyte-specific enhancer factor 2A OS=Bos taurus ... [more]
MEF2B_HUMAN2.392e-1245.35Myocyte-specific enhancer factor 2B OS=Homo sapien... [more]
MEF2B_MOUSE5.329e-1247.95Myocyte-specific enhancer factor 2B OS=Mus musculu... [more]
RLM1_YEAST2.025e-1135.58Transcription factor RLM1 OS=Saccharomyces cerevis... [more]
AGL62_ARATH2.645e-1131.71Agamous-like MADS-box protein AGL62 OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_11H10_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11H10-P19-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671582 ID=CX671582; Name=CX671582; organism=Citrus sinensis; type=EST; length=778bp
ATAAAGAAAAAGAAATTGAAGATACTGTTTTGCTATAAAAGGGAAGGCAA
CCTTTCCTTTCTCGAACACACAATCCAAGTCTGTCTCTCCGTCTCTATTT
CTTCTCACTTTCTGTAATTGGTGGCTTTAGGTTACTGTGATCAGTCCTGA
ACCAGGCCTCCTATTAGGTAAATACCATATATACATATATAGATTATGGC
GAGAGAGAAGATCAAGATCAGGAAGATTGATAACATAACAGCGAGACAAG
TGACTTTCTCAAAGAGAAGACGAGGCCTTTTCAAGAAAGCAGAAGAGCTT
TCTGTTCTTTGTGATGCTGAGGTTGGAGTCATCATTTTCTCTGCTACTGG
CAAGCTCTTTGAGTCCTCCAGCTCCAGCATGAAGGACATAATTGCAAGGT
ACAACATGCATTCAAGTAACATCAGCAAATTGAATCATCCATCTCTTGAA
CTGCAGTTGGAGAATAGCAAGTATCTCAGTTTGAGCAGGGAAATTGCTGA
TAAGAGCCGTCAACTAAGGCAGATGAGAGGAGAGGATCTTCATGGATTGA
CTATTGAGGAACTCCAGCACCTTGAAACAATGCTTGAACAGGGACTTAGC
CGTGTGCTCCAGACAAAGGGTGACCGGATTATGAATGAGATCTCTACACT
TGAAAGGAAGGGAGCTAAGCTGCTGGAGGAGAACAAGAATCTAAAGCAGA
AGGTGGCCTCCTCGTGCAAGGGAAAAAGAGTTGTTTTAGTGGATTCAGAT
ATTGCTATCCAAGAAGAAGGCATGTCAT
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