CX671582

Overview
NameCX671582
Unique NameCX671582
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length778
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5069 contig Csv1_Contig5069:1..778. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: MADS7_ORYSI (MADS-box transcription factor 7 OS=Oryza sativa subsp. indica GN=MADS7 PE=2 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 5.490e-25
Identity = 65/159 (40.88%), Postives = 97/159 (61.01%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFE-SSSSSMKDIIARYNMHS---SNISKLNHPSLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERK 660
            M R ++++++I+N   RQVTF+KRR GL KKA ELSVLCDAEV +IIFS  GKL+E  S+ SM   + +Y   S      +  N  S +L+   ++YL L   + +  R  R + GEDL  L I+EL+ LE  L+  L  V  T+   ++++++ L+RK
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSTQSMTKTLEKYQKCSYAGPETAVQNRESEQLKASRNEYLKLKARVENLQRTQRNLLGEDLDSLGIKELESLEKQLDSSLKHVRTTRTKHLVDQLTELQRK 159          
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: MAD58_ORYSJ (MADS-box transcription factor 58 OS=Oryza sativa subsp. japonica GN=MADS58 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.490e-25
Identity = 65/180 (36.11%), Postives = 105/180 (58.33%), Query Frame = 1
Query:  199 AREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYNMHSSNISKLNH-PSLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAXXXXXXXXXXQKVASSCKGKRVV 735
            +R KI+I++I+N T RQVTF KRR GL KKA ELSVLCDAEV +++FS+ G+L+E S++S+K+ I RY   +S+ S  +    +  Q    +   L ++I +     R + G+++  +   EL+ LE  L++GL ++   K + +  EI  ++R+             KVA S +G + V
Sbjct:   44 SRGKIEIKRIENTTNRQVTFCKRRSGLLKKAYELSVLCDAEVALVVFSSRGRLYEYSNNSVKETIERYKKANSDTSNASTVAEINAQHYQQEAAKLKQQITNLQNSNRTLVGDNITTMNHRELKQLEGRLDKGLGKIRARKNELLCAEIEYMQRRETELQNDNMYLKSKVAESERGLQTV 223          
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: MAD17_ORYSJ (MADS-box transcription factor 17 OS=Oryza sativa subsp. japonica GN=MADS17 PE=1 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 5.490e-25
Identity = 70/158 (44.30%), Postives = 94/158 (59.49%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYNMHSSNISKLNHPSLELQLENSKYLSLSR---EIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERK 660
            M R ++++++I+N   RQVTFSKRR GL KKA ELSVLCDAEV +IIFS+ GKL+E  S+ +   + +YN    N    N  +L      S Y  +SR   ++    R  R M GEDL  L+I+ELQ LE  LE  LS+  Q K   +M ++  L RK
Sbjct:    1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGINKTLEKYNSCCYNAQGSN-SALAGGEHQSWYQEMSRLKTKLECLQRSQRHMLGEDLGPLSIKELQQLEKQLEYSLSQARQRKTQIMMEQVDDLRRK 157          
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: AGL14_ARATH (Agamous-like MADS-box protein AGL14 OS=Arabidopsis thaliana GN=AGL14 PE=2 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 5.490e-25
Identity = 67/156 (42.95%), Postives = 92/156 (58.97%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFE-SSSSSMKDIIARYNMHSSNISKLNHPSLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERK 660
            M R K ++++I+N T+RQVTFSKRR GL KKA ELSVLCDAEV +IIFS  GKL+E SSSSS+   + RY     ++   +  +   Q    +   L+R+I       R+M GE L   +IEELQ LE  L++ L ++   K   +  E   L+ K
Sbjct:    1 MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSSSSIPKTVERYQKRIQDLGSNHKRNDNSQQSKDETYGLARKIEHLEISTRKMMGEGLDASSIEELQQLENQLDRSLMKIRAKKYQLLREETEKLKEK 156          
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: SOC1_ARATH (MADS-box protein SOC1 OS=Arabidopsis thaliana GN=SOC1 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 9.364e-25
Identity = 66/157 (42.04%), Postives = 97/157 (61.78%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYNMHSSNISKLNHPSLELQLENSKY--LSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERK 660
            M R K ++++I+N T+RQVTFSKRR GL KKA ELSVLCDAEV +IIFS  GKL+E +SS+M+D I RY  H+ +      P  E  +++ KY   ++ ++I       R++ GE +   +IEELQ +E  LE+ +  +   K      +I  L++K
Sbjct:    1 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKGKLYEFASSNMQDTIDRYLRHTKD-RVSTKPVSEENMQHLKYEAANMMKKIEQLEASKRKLLGEGIGTCSIEELQQIEQQLEKSVKCIRARKTQVFKEQIEQLKQK 156          
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: AGL19_ARATH (Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana GN=AGL19 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 9.364e-25
Identity = 65/153 (42.48%), Postives = 90/153 (58.82%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYNMHSSNISKLNHPSLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLE 654
            M R K ++++I+N T+RQVTFSKRR GL KKA ELSVLCDAEV ++IFS   KL+E SSSS+   I RY      I   +  +   Q    +   L+++I       R++ GE +   +IEELQ LE  L++ LSR+   K   +  EI  L+
Sbjct:    1 MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALVIFSPRSKLYEFSSSSIAATIERYQRRIKEIGNNHKRNDNSQQARDETSGLTKKIEQLEISKRKLLGEGIDACSIEELQQLENQLDRSLSRIRAKKYQLLREEIEKLK 153          
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: AG_PETHY (Floral homeotic protein AGAMOUS OS=Petunia hybrida GN=AG1 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.223e-24
Identity = 68/186 (36.56%), Postives = 109/186 (58.60%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYN---MHSSNISKLNHPSLE-LQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAXXXXXXXXXXQKVASSCKGKRVVLV 741
            + R KI+I++I+N T RQVTF KRR GL KKA ELSVLCDAEV +I+FS+ G+L+E +++S+K  I RY      SSN   +   + +  Q E SK   L  +I +   Q R   GE L  L + +L++LE  +E+G+S++   K + +  EI  ++++             K+A + + +++ L+
Sbjct:   17 LGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIERYKKACSDSSNTGSIAEANAQYYQQEASK---LRAQIGNLQNQNRNFLGESLAALNLRDLRNLEQKIEKGISKIRAKKNELLFAEIEYMQKREIDLHNNNQYLRAKIAETERSQQMNLM 199          
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: SEP2_ARATH (Developmental protein SEPALLATA 2 OS=Arabidopsis thaliana GN=SEP2 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.597e-24
Identity = 67/157 (42.68%), Postives = 97/157 (61.78%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFE-SSSSSMKDIIARYNMHS-SNISKLNHPSLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERK 660
            M R ++++++I+N   RQVTF+KRR GL KKA ELSVLCDAEV +I+FS  GKL+E  S+S+M   + RY   S  +I   N P+ EL+    +YL L     +  RQ R + GEDL  L  +EL+ LE  L+  L +V   K   +++++S L+ K
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCSTSNMLKTLERYQKCSYGSIEVNNKPAKELENSYREYLKLKGRYENLQRQQRNLLGEDLGPLNSKELEQLERQLDGSLKQVRCIKTQYMLDQLSDLQGK 157          
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: AG_ARATH (Floral homeotic protein AGAMOUS OS=Arabidopsis thaliana GN=AG PE=1 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 2.086e-24
Identity = 63/159 (39.62%), Postives = 105/159 (66.04%), Query Frame = 1
Query:  202 REKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARY------NMHSSNISKLNHPSLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERK 660
            R KI+I++I+N T RQVTF KRR GL KKA ELSVLCDAEV +I+FS+ G+L+E S++S+K  I RY      N ++ +++++N  +   Q E++K   L ++I       RQ+ GE +  ++ +EL++LE  LE+ ++R+   K + + +EI  ++++
Sbjct:   19 RGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNSVKGTIERYKKAISDNSNTGSVAEIN--AQYYQQESAK---LRQQIISIQNSNRQLMGETIGSMSPKELRNLEGRLERSITRIRSKKNELLFSEIDYMQKR 172          
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: MADS1_ORYSJ (MADS-box transcription factor 1 OS=Oryza sativa subsp. japonica GN=MADS1 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.647e-24
Identity = 63/156 (40.38%), Postives = 96/156 (61.54%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFE-SSSSSMKDIIARYNMHSSNISKLNHPSLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERK 660
            M R K+++++I+N  +RQVTF+KRR GL KKA ELS+LCDAEV +IIFS  G+LFE SSSS M   + RY   S N +  +  + E ++   +YL L   +       R + GEDL  L+++EL+ LE  +E  L ++   K   +++++  L+ K
Sbjct:    1 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSLLCDAEVALIIFSGRGRLFEFSSSSCMYKTLERY--RSCNYNSQDAAAPENEINYQEYLKLKTRVEFLQTTQRNILGEDLGPLSMKELEQLENQIEVSLKQIRSRKNQALLDQLFDLKSK 154          
The following BLAST results are available for this feature:
BLAST of CX671582 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
MADS7_ORYSI5.490e-2540.88MADS-box transcription factor 7 OS=Oryza sativa su... [more]
MAD58_ORYSJ5.490e-2536.11MADS-box transcription factor 58 OS=Oryza sativa s... [more]
MAD17_ORYSJ5.490e-2544.30MADS-box transcription factor 17 OS=Oryza sativa s... [more]
AGL14_ARATH5.490e-2542.95Agamous-like MADS-box protein AGL14 OS=Arabidopsis... [more]
SOC1_ARATH9.364e-2542.04MADS-box protein SOC1 OS=Arabidopsis thaliana GN=S... [more]
AGL19_ARATH9.364e-2542.48Agamous-like MADS-box protein AGL19 OS=Arabidopsis... [more]
AG_PETHY1.223e-2436.56Floral homeotic protein AGAMOUS OS=Petunia hybrida... [more]
SEP2_ARATH1.597e-2442.68Developmental protein SEPALLATA 2 OS=Arabidopsis t... [more]
AG_ARATH2.086e-2439.62Floral homeotic protein AGAMOUS OS=Arabidopsis tha... [more]
MADS1_ORYSJ4.647e-2440.38MADS-box transcription factor 1 OS=Oryza sativa su... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_11H10_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11H10-P19-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671582 ID=CX671582; Name=CX671582; organism=Citrus sinensis; type=EST; length=778bp
ATAAAGAAAAAGAAATTGAAGATACTGTTTTGCTATAAAAGGGAAGGCAA
CCTTTCCTTTCTCGAACACACAATCCAAGTCTGTCTCTCCGTCTCTATTT
CTTCTCACTTTCTGTAATTGGTGGCTTTAGGTTACTGTGATCAGTCCTGA
ACCAGGCCTCCTATTAGGTAAATACCATATATACATATATAGATTATGGC
GAGAGAGAAGATCAAGATCAGGAAGATTGATAACATAACAGCGAGACAAG
TGACTTTCTCAAAGAGAAGACGAGGCCTTTTCAAGAAAGCAGAAGAGCTT
TCTGTTCTTTGTGATGCTGAGGTTGGAGTCATCATTTTCTCTGCTACTGG
CAAGCTCTTTGAGTCCTCCAGCTCCAGCATGAAGGACATAATTGCAAGGT
ACAACATGCATTCAAGTAACATCAGCAAATTGAATCATCCATCTCTTGAA
CTGCAGTTGGAGAATAGCAAGTATCTCAGTTTGAGCAGGGAAATTGCTGA
TAAGAGCCGTCAACTAAGGCAGATGAGAGGAGAGGATCTTCATGGATTGA
CTATTGAGGAACTCCAGCACCTTGAAACAATGCTTGAACAGGGACTTAGC
CGTGTGCTCCAGACAAAGGGTGACCGGATTATGAATGAGATCTCTACACT
TGAAAGGAAGGGAGCTAAGCTGCTGGAGGAGAACAAGAATCTAAAGCAGA
AGGTGGCCTCCTCGTGCAAGGGAAAAAGAGTTGTTTTAGTGGATTCAGAT
ATTGCTATCCAAGAAGAAGGCATGTCAT
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