CX671582

Overview
NameCX671582
Unique NameCX671582
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length778
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5069 contig Csv1_Contig5069:1..778. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: AGL8_SOLLC (Agamous-like MADS-box protein AGL8 homolog OS=Solanum lycopersicum GN=TDR4 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.766e-23
Identity = 66/160 (41.25%), Postives = 96/160 (60.00%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFE-SSSSSMKDIIARYNMHS---SNISKLNHPS-LELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERK 660
            M R ++++++I+N   RQVTFSKRR GL KKA E+SVLCDAEVG+I+FS  GKLFE ++ S M+ I+ RY  +S     +   +H S +   LE+ K   L   +    R  +   GEDL  L+++ELQ+LE  L+  L  +   K   +   IS L++K
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYANDSCMERILERYERYSFAEKQLVPTDHTSPVSWTLEHRK---LKARLEVLQRNQKHYVGEDLESLSMKELQNLEHQLDSALKHIRSRKNQLMHESISVLQKK 157          
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: AGL6_ARATH (Agamous-like MADS-box protein AGL6 OS=Arabidopsis thaliana GN=AGL6 PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.766e-23
Identity = 65/155 (41.94%), Postives = 88/155 (56.77%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYNMHSSNISKLNHPSLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERK 660
            M R ++++++I+N   RQVTFSKRR GL KKA ELSVLCDAEV +IIFS+ GKL+E  S  ++  I RYN   +     N P    Q    +   L  +     R  R + GEDL  + ++ELQ LE  LE  L+   Q K   +M E+  L +K
Sbjct:    1 MGRGRVEMKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSVGIESTIERYNRCYNCSLSNNKPEETTQSWCQEVTKLKSKYESLVRTNRNLLGEDLGEMGVKELQALERQLEAALTATRQRKTQVMMEEMEDLRKK 155          
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: AGL13_ARATH (Agamous-like MADS-box protein AGL13 OS=Arabidopsis thaliana GN=AGL13 PE=2 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.766e-23
Identity = 68/156 (43.59%), Postives = 93/156 (59.62%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYNMHSSNISKLNHPSLE-LQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERK 660
            M R K+++++I+N   RQVTFSKR+ GL KKA ELSVLCDAEV +IIFS  GKL+E S+  +   I RY     N+  L++ +LE  Q    +   L  +     R  R + GEDL G++I+ELQ LE  LE  LS   + K   +M ++  L RK
Sbjct:    1 MGRGKVEVKRIENKITRQVTFSKRKSGLLKKAYELSVLCDAEVSLIIFSTGGKLYEFSNVGVGRTIERYYRCKDNL--LDNDTLEDTQGLRQEVTKLKCKYESLLRTHRNLVGEDLEGMSIKELQTLERQLEGALSATRKQKTQVMMEQMEELRRK 154          
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: AGL11_ARATH (Agamous-like MADS-box protein AGL11 OS=Arabidopsis thaliana GN=AGL11 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.766e-23
Identity = 61/161 (37.89%), Postives = 102/161 (63.35%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARY------NMHSSNISKLNHPSLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERK 660
            M R KI+I++I+N T RQVTF KRR GL KKA ELSVLCDAEV +I+FS  G+L+E ++++++  I RY      + ++S + ++N  +   Q E++K   L ++I       R + G+ L  L+++EL+ +E  LE+ +SR+   K + ++ EI   +++
Sbjct:    1 MGRGKIEIKRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNNIRSTIERYKKACSDSTNTSTVQEIN--AAYYQQESAK---LRQQIQTIQNSNRNLMGDSLSSLSVKELKQVENRLEKAISRIRSKKHELLLVEIENAQKR 156          
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: MAD56_ORYSI (MADS-box transcription factor 56 OS=Oryza sativa subsp. indica GN=MADS56 PE=2 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 2.306e-23
Identity = 62/158 (39.24%), Postives = 103/158 (65.19%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFE-SSSSSMKDIIARYNMHSSNISKLNHPSLELQLENSK--YLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERK 660
            M R + ++++I+N T+RQVTFSKRR GL KKA ELSVLCDAEV +I+FS  G+L+E +S+ S++  I RY  ++ +   +N+ +++  ++  K   L L++++       R++ GE+L G +IEEL+ LE  LE+ L  +   K + +  +I+ L+ K
Sbjct:    1 MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASAPSLQKTIDRYKAYTKD--HVNNKTIQQDIQQVKDDTLGLAKKLEALDESRRKILGENLEGCSIEELRGLEMKLEKSLHNIRLKKTELLERQIAKLKEK 156          
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: MAD21_ORYSJ (MADS-box transcription factor 21 OS=Oryza sativa subsp. japonica GN=MADS21 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.306e-23
Identity = 64/177 (36.16%), Postives = 105/177 (59.32%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFE-SSSSSMKDIIARYNMHSSNISKLNHPSLEL---QLENSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAXXXXXXXXXXQKVASS 714
            M R KI+I++I+N T+RQVTF KRR GL KKA EL++LCDAE+ +I+FS+ G+L+E S+ +S +  I RY   S++ S  + P +++   Q    +   +  +I       R + GE +  +T +EL+ LE  LE+G+SR+   K + + +EI  ++++ A           KVA +
Sbjct:    1 MGRGKIEIKRIENKTSRQVTFCKRRNGLLKKAYELAILCDAEIALIVFSSRGRLYEFSNVNSTRSTIERYKKASASTSG-SAPVIDVNSHQYFQQEAAKMRHQIQTLQNANRHLIGESIGNMTAKELKSLENRLEKGISRIRSKKHELLFSEIEYMQKREADLQNENMFLRAKVAEA 176          
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: MAD14_ORYSI (MADS-box transcription factor 14 OS=Oryza sativa subsp. indica GN=MADS14 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.012e-23
Identity = 63/157 (40.13%), Postives = 91/157 (57.96%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFE-SSSSSMKDIIARYNMHSSNISKLNHPSLELQLE-NSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERK 660
            M R K+++++I+N   RQVTFSKRR GL KKA E+SVLCDAEV +IIFS  GKL++ ++ S M  I+ RY  +S     L     + Q     +Y  L  ++    +  + + GEDL  L ++ELQ LE  LE  L  +   K   ++  I+ L+RK
Sbjct:    1 MGRGKVQLKRIENTINRQVTFSKRRSGLLKKANEISVLCDAEVALIIFSTKGKLYKYATDSCMDKILERYERYSYAEKVLISAESDTQGNWCHEYRKLKAKVETIQKCQKHLMGEDLESLNLKELQQLEQQLENSLKHIRSRKSQLMLESINELQRK 157          
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: AGL9_PETHY (Agamous-like MADS-box protein AGL9 homolog OS=Petunia hybrida GN=FBP2 PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 3.012e-23
Identity = 65/159 (40.88%), Postives = 94/159 (59.12%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFE-SSSSSMKDIIARYNMHSSNISKLN---HPSLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERK 660
            M R ++++++I+N   RQVTF+KRR GL KKA ELSVLCDAEV +IIFS  GKL+E  SSSSM   + RY   +    + N     +LE+     +YL L        R  R + GEDL  L  +EL+ LE  L+  L ++  T+   +++++  L+RK
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPETNISTREALEIS-SQQEYLKLKARYEALQRSQRNLLGEDLGPLNSKELESLERQLDMSLKQIRSTRTQLMLDQLQDLQRK 158          
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: AGL8_SINAL (Agamous-like MADS-box protein AGL8 homolog OS=Sinapis alba GN=AGL8 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.934e-23
Identity = 65/160 (40.62%), Postives = 98/160 (61.25%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFE-SSSSSMKDIIARYNMHSSNISKLNHPSLELQ----LENSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERK 660
            M R ++++++I+N   RQVTFSKRR GL KKA E+SVLCDAEV ++IFS+ GKLFE S+ S M+ I+ RY+ +  +  +L    +       LE++K L    E+ +K++  R   GEDL  L+++ELQ LE  L   +  +   K   +   IS L++K
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALVIFSSKGKLFEYSTDSCMEKILERYDRYLYSDKQLVGRDISQSENWVLEHAK-LKARVEVLEKNK--RNFMGEDLDSLSLKELQSLEHQLHAAIKSIRSRKNQAMFESISALQKK 157          
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: AGL8_ARATH (Agamous-like MADS-box protein AGL8 OS=Arabidopsis thaliana GN=AGL8 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.934e-23
Identity = 66/160 (41.25%), Postives = 99/160 (61.88%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFE-SSSSSMKDIIARYNMHSSNISKL----NHPSLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERK 660
            M R ++++++I+N   RQVTFSKRR GL KKA E+SVLCDAEV +I+FS+ GKLFE S+ S M+ I+ RY+ +  +  +L       S    LE++K L    E+ +K++  R   GEDL  L+++ELQ LE  L+  +  +   K   +   IS L++K
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSSKGKLFEYSTDSCMERILERYDRYLYSDKQLVGRDVSQSENWVLEHAK-LKARVEVLEKNK--RNFMGEDLDSLSLKELQSLEHQLDAAIKSIRSRKNQAMFESISALQKK 157          
The following BLAST results are available for this feature:
BLAST of CX671582 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
AGL8_SOLLC1.766e-2341.25Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
AGL6_ARATH1.766e-2341.94Agamous-like MADS-box protein AGL6 OS=Arabidopsis ... [more]
AGL13_ARATH1.766e-2343.59Agamous-like MADS-box protein AGL13 OS=Arabidopsis... [more]
AGL11_ARATH1.766e-2337.89Agamous-like MADS-box protein AGL11 OS=Arabidopsis... [more]
MAD56_ORYSI2.306e-2339.24MADS-box transcription factor 56 OS=Oryza sativa s... [more]
MAD21_ORYSJ2.306e-2336.16MADS-box transcription factor 21 OS=Oryza sativa s... [more]
MAD14_ORYSI3.012e-2340.13MADS-box transcription factor 14 OS=Oryza sativa s... [more]
AGL9_PETHY3.012e-2340.88Agamous-like MADS-box protein AGL9 homolog OS=Petu... [more]
AGL8_SINAL3.934e-2340.63Agamous-like MADS-box protein AGL8 homolog OS=Sina... [more]
AGL8_ARATH3.934e-2341.25Agamous-like MADS-box protein AGL8 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_11H10_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11H10-P19-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671582 ID=CX671582; Name=CX671582; organism=Citrus sinensis; type=EST; length=778bp
ATAAAGAAAAAGAAATTGAAGATACTGTTTTGCTATAAAAGGGAAGGCAA
CCTTTCCTTTCTCGAACACACAATCCAAGTCTGTCTCTCCGTCTCTATTT
CTTCTCACTTTCTGTAATTGGTGGCTTTAGGTTACTGTGATCAGTCCTGA
ACCAGGCCTCCTATTAGGTAAATACCATATATACATATATAGATTATGGC
GAGAGAGAAGATCAAGATCAGGAAGATTGATAACATAACAGCGAGACAAG
TGACTTTCTCAAAGAGAAGACGAGGCCTTTTCAAGAAAGCAGAAGAGCTT
TCTGTTCTTTGTGATGCTGAGGTTGGAGTCATCATTTTCTCTGCTACTGG
CAAGCTCTTTGAGTCCTCCAGCTCCAGCATGAAGGACATAATTGCAAGGT
ACAACATGCATTCAAGTAACATCAGCAAATTGAATCATCCATCTCTTGAA
CTGCAGTTGGAGAATAGCAAGTATCTCAGTTTGAGCAGGGAAATTGCTGA
TAAGAGCCGTCAACTAAGGCAGATGAGAGGAGAGGATCTTCATGGATTGA
CTATTGAGGAACTCCAGCACCTTGAAACAATGCTTGAACAGGGACTTAGC
CGTGTGCTCCAGACAAAGGGTGACCGGATTATGAATGAGATCTCTACACT
TGAAAGGAAGGGAGCTAAGCTGCTGGAGGAGAACAAGAATCTAAAGCAGA
AGGTGGCCTCCTCGTGCAAGGGAAAAAGAGTTGTTTTAGTGGATTCAGAT
ATTGCTATCCAAGAAGAAGGCATGTCAT
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