CX671582

Overview
NameCX671582
Unique NameCX671582
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length778
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: FBP24_PETHY (MADS-box protein FBP24 OS=Petunia hybrida GN=FBP24 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.138e-23
Identity = 63/156 (40.38%), Postives = 95/156 (60.90%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFE--SSSSSMKDIIARYNMHSSNISKLNHPSLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLER 657
            M R KI++++I+N T+RQVTFSKRR GL KK  ELSVLCDA++G+IIFS+ GKLFE  S   SM  II+RY   +     +    ++L  E +K   + R+  +    L++ +G+DL     EEL  LE  LE  L+++   K + +  ++  L++
Sbjct:    4 MGRGKIEVKRIENKTSRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSKGKLFEYCSQPHSMSQIISRYLQTTGASLPVEDNRVQLYDEVAK---MRRDTLNLQLSLQRYKGDDLSLAQYEELNELEKQLEHALNKIRARKLELMQQQMENLKK 156          
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: MADS3_ORYSJ (MADS-box transcription factor 3 OS=Oryza sativa subsp. japonica GN=MADS3 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.711e-23
Identity = 61/185 (32.97%), Postives = 113/185 (61.08%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARY------NMHSSNISKLNHPSLELQLENSKYLSLSREIAD-KSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAXXXXXXXXXXQKVASSCKGKR 729
            M R KI+I++I+N T RQVTF KRR GL KKA ELSVLCDAEV +I+FS+ G+L+E +++S+K  + RY        +S  ++++N  +   Q E+SK   L ++I+  ++   R + G+ ++ +++ +L+ +E  LE+G++++   K + +  E+  ++++             KV  + +G++
Sbjct:    1 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKSTVERYKKANSDTSNSGTVAEVN--AQHYQQESSK---LRQQISSLQNANSRTIVGDSINTMSLRDLKQVENRLEKGIAKIRARKNELLYAEVEYMQKREVELQNDNMYLRSKVVENERGQQ 180          
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: MADS2_ORYSJ (MADS-box transcription factor 2 OS=Oryza sativa subsp. japonica GN=MADS2 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.711e-23
Identity = 64/150 (42.67%), Postives = 95/150 (63.33%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFE--SSSSSMKDIIARYNMHSSNIS-KLNHPSLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMN 636
            M R KI+I++I+N T RQVTFSKRR G+ KKA E+SVLCDAEVGV+IFS+ GKL++  S  +S+  I+ +Y  +S  I     H SL  +++  K     +E  +   +LR ++GEDL+ L  +EL  +E  L+ G+  V     D++M+
Sbjct:    1 MGRGKIEIKRIENSTNRQVTFSKRRSGILKKAREISVLCDAEVGVVIFSSAGKLYDYCSPKTSLSRILEKYQTNSGKILWDEKHKSLSAEIDRIK-----KENDNMQIELRHLKGEDLNSLQPKELIMIEEALDNGIVNV----NDKLMD 141          
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: MAD13_ORYSJ (MADS-box transcription factor 13 OS=Oryza sativa subsp. japonica GN=MADS13 PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 6.711e-23
Identity = 60/159 (37.74%), Postives = 102/159 (64.15%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFE-SSSSSMKDIIARYNMHSSNISKLNHPSLEL---QLENSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERK 660
            M R +I+I++I+N T+RQVTF KRR GL KKA ELSVLCDAEV +I+FS+ G+L+E S+++++K  I RY    +  S    P +E+   Q    +   L  +I       + + G+++  L+++EL+ LE+ LE+G+S++   K + + +EI+ + ++
Sbjct:    1 MGRGRIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNNNVKATIDRYKKAHACGSTSGAPLIEVNAQQYYQQESAKLRHQIQMLQNTNKHLVGDNVSNLSLKELKQLESRLEKGISKIRARKNELLASEINYMAKR 159          
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: SEP3_ARATH (Developmental protein SEPALLATA 3 OS=Arabidopsis thaliana GN=SEP3 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.145e-22
Identity = 67/160 (41.88%), Postives = 97/160 (60.62%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFE-SSSSSMKDIIARYNMHSSNISKLNHPSLE-LQLENS---KYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERK 660
            M R ++++++I+N   RQVTF+KRR GL KKA ELSVLCDAEV +IIFS  GKL+E  SSSSM   + RY   +    + N PS E L +E S   +YL L        R  R + GEDL  L+ +EL+ LE  L+  L ++   +   ++++++ L+ K
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLRTLERYQKCNYGAPEPNVPSREALAVELSSQQEYLKLKERYDALQRTQRNLLGEDLGPLSTKELESLERQLDSSLKQIRALRTQFMLDQLNDLQSK 160          
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: MTF1_PEA (MADS-box transcription factor 1 OS=Pisum sativum GN=MTF1 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.145e-22
Identity = 65/160 (40.62%), Postives = 97/160 (60.62%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFE-SSSSSMKDIIARYNMHSSNISKLNHPSLE-LQLENS---KYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERK 660
            M R ++++++++N   RQVTF+KRR GL KKA ELSVLCDAEV +I+FS  GKL+E  S+SSM   + RY   +    + N  S E L LE S   +YL L        R  R + GEDL  L+ ++L+ LE  L+  L ++  T+   +++++  L+RK
Sbjct:    1 MGRGRVELKRVENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCSTSSMLKTLERYQKCNYGAPEGNVTSKEALVLELSSQQEYLKLKARYESLQRSQRNLMGEDLGPLSSKDLETLERQLDSSLKQIRSTRTQFMLDQLGDLQRK 160          
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: AGL9_ARADE (Agamous-like MADS-box protein AGL9 homolog OS=Aranda deborah PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.145e-22
Identity = 61/156 (39.10%), Postives = 93/156 (59.62%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFE-SSSSSMKDIIARYNMHSSNISKLNHPSLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERK 660
            M R +++++ I+N   RQVTF+KRR+ L KKA ELSVLCDAEV +IIFS  GKL+E  SS+SM   + +Y   +    +    S E Q    +YL L   +    R  R + GEDL  L  +EL+ LE  L+  L ++  T+   ++++++ L+R+
Sbjct:    1 MGRGRVELKMIENKINRQVTFAKRRKRLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSTSMLKTLEKYQKCNFGSPESTIISRETQSSQQEYLKLKNRVEALQRSQRNLLGEDLGPLGSKELEQLERQLDSSLRQIRSTRTQFMLDQLADLQRR 156          
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: AGL8_SOLCO (Agamous-like MADS-box protein AGL8 homolog OS=Solanum commersonii GN=SCM1 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.145e-22
Identity = 66/160 (41.25%), Postives = 97/160 (60.62%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFE-SSSSSMKDIIARYNMHS---SNISKLNHPSL-ELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERK 660
            M R ++++++I+N   RQVTFSKRR GL KKA E+SVLCDAEVG+I+FS  GKLFE ++ S M+ ++ RY  +S     +   +H S     LEN+K L    E+  ++ +L    GEDL  L ++ELQ+LE  L   L  +   K   +   IS L+++
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYATDSCMERLLERYERYSFAEKQLVPTDHTSPGSWTLENAK-LKARLEVLQRNEKL--YVGEDLESLNMKELQNLEHQLASALKHIRSRKNQLMHESISVLQKQ 157          
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: FBP1_PETHY (Floral homeotic protein FBP1 OS=Petunia hybrida GN=FBP1 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.952e-22
Identity = 62/156 (39.74%), Postives = 98/156 (62.82%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYN-MHSSNISKLNHPSLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERK 660
            M R KI+I++I+N + RQVT+SKRR G+ KKA+E+SVLCDA V VIIF+++GK+ E SS+S+ DI+ +Y+ +    +    H +L+ ++   K  + + +I     +LR ++GED+  L   EL  LE  LE GL+ +   +     NE+  + RK
Sbjct:    1 MGRGKIEIKRIENSSNRQVTYSKRRNGILKKAKEISVLCDARVSVIIFASSGKMHEFSSTSLVDILDQYHKLTGRRLLDAKHENLDNEINKVKKDNDNMQI-----ELRHLKGEDITSLNHRELMILEDALENGLTSIRNKQ-----NEVLRMMRK 146          
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: MAD20_ORYSJ (MADS-box transcription factor 20 OS=Oryza sativa subsp. japonica GN=MADS20 PE=2 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 2.550e-22
Identity = 61/161 (37.89%), Postives = 99/161 (61.49%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFE--SSSSSMKDIIARYNMHSSNISKLNHPSLEL-QLENS---KYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERK 660
            M R K+++R+I+N  +RQVTFSKRR GL KKA E++VLCD +V  I+FSA G LF   SS ++M+ I+ +Y+ H   +S+ N+   E  +LE S    ++ L   I    +  R + G++L  LT++++Q LE  ++  L+ +   K   +M + + LE+K
Sbjct:    1 MGRGKVQVRRIENEVSRQVTFSKRRPGLLKKAHEIAVLCDVDVAAIVFSAKGNLFHYASSHTTMERILEKYDRHEL-LSEGNNVIEEFPELEGSMSYDHIKLRGRIEALKKSQRNLMGQELDSLTLQDIQQLENQIDTSLNNIRSRKEKLLMEKNTILEKK 160          
The following BLAST results are available for this feature:
BLAST of CX671582 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
FBP24_PETHY5.138e-2340.38MADS-box protein FBP24 OS=Petunia hybrida GN=FBP24... [more]
MADS3_ORYSJ6.711e-2332.97MADS-box transcription factor 3 OS=Oryza sativa su... [more]
MADS2_ORYSJ6.711e-2342.67MADS-box transcription factor 2 OS=Oryza sativa su... [more]
MAD13_ORYSJ6.711e-2337.74MADS-box transcription factor 13 OS=Oryza sativa s... [more]
SEP3_ARATH1.145e-2241.88Developmental protein SEPALLATA 3 OS=Arabidopsis t... [more]
MTF1_PEA1.145e-2240.63MADS-box transcription factor 1 OS=Pisum sativum G... [more]
AGL9_ARADE1.145e-2239.10Agamous-like MADS-box protein AGL9 homolog OS=Aran... [more]
AGL8_SOLCO1.145e-2241.25Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
FBP1_PETHY1.952e-2239.74Floral homeotic protein FBP1 OS=Petunia hybrida GN... [more]
MAD20_ORYSJ2.550e-2237.89MADS-box transcription factor 20 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_11H10_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11H10-P19-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671582 ID=CX671582; Name=CX671582; organism=Citrus sinensis; type=EST; length=778bp
ATAAAGAAAAAGAAATTGAAGATACTGTTTTGCTATAAAAGGGAAGGCAA
CCTTTCCTTTCTCGAACACACAATCCAAGTCTGTCTCTCCGTCTCTATTT
CTTCTCACTTTCTGTAATTGGTGGCTTTAGGTTACTGTGATCAGTCCTGA
ACCAGGCCTCCTATTAGGTAAATACCATATATACATATATAGATTATGGC
GAGAGAGAAGATCAAGATCAGGAAGATTGATAACATAACAGCGAGACAAG
TGACTTTCTCAAAGAGAAGACGAGGCCTTTTCAAGAAAGCAGAAGAGCTT
TCTGTTCTTTGTGATGCTGAGGTTGGAGTCATCATTTTCTCTGCTACTGG
CAAGCTCTTTGAGTCCTCCAGCTCCAGCATGAAGGACATAATTGCAAGGT
ACAACATGCATTCAAGTAACATCAGCAAATTGAATCATCCATCTCTTGAA
CTGCAGTTGGAGAATAGCAAGTATCTCAGTTTGAGCAGGGAAATTGCTGA
TAAGAGCCGTCAACTAAGGCAGATGAGAGGAGAGGATCTTCATGGATTGA
CTATTGAGGAACTCCAGCACCTTGAAACAATGCTTGAACAGGGACTTAGC
CGTGTGCTCCAGACAAAGGGTGACCGGATTATGAATGAGATCTCTACACT
TGAAAGGAAGGGAGCTAAGCTGCTGGAGGAGAACAAGAATCTAAAGCAGA
AGGTGGCCTCCTCGTGCAAGGGAAAAAGAGTTGTTTTAGTGGATTCAGAT
ATTGCTATCCAAGAAGAAGGCATGTCAT
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