CX671582

Overview
NameCX671582
Unique NameCX671582
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length778
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5069 contig Csv1_Contig5069:1..778. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: AGL8_SOLTU (Agamous-like MADS-box protein AGL8 homolog OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.550e-22
Identity = 64/160 (40.00%), Postives = 95/160 (59.38%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFE-SSSSSMKDIIARYNMHS---SNISKLNHPSL-ELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERK 660
            M R ++++++I+N   RQVTFSKRR GL KKA E+SVLCDAEVG+I+FS  GKLFE ++ S M+ ++ RY  +S     +   +H S     LE++K   L   +    R  +   GEDL  L ++ELQ+LE  L+  L  +   K   +   IS L+++
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYANDSCMERLLERYERYSFAERQLVPTDHTSPGSWTLEHAK---LKARLEVLQRNQKHYVGEDLESLNMKELQNLEHQLDSALKHIRSRKNQLMHESISVLQKQ 157          
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: GLOB_TOBAC (Floral homeotic protein GLOBOSA OS=Nicotiana tabacum GN=GLO PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.330e-22
Identity = 58/144 (40.28%), Postives = 93/144 (64.58%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYN-MHSSNISKLNHPSLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGD 624
            M R KI+I++I+N + RQVT+SKRR G+ KKA+E+SVLCDA V VIIF+++GK+ E SS+S+ DI+ +Y+ +    +    H +L+ ++   K  + + +I     +LR ++GED+  L   EL  LE  L+ GL+ +   + D
Sbjct:    1 MGRGKIEIKRIENSSNRQVTYSKRRNGILKKAKEISVLCDARVSVIIFASSGKMHEFSSTSLVDILDQYHKLTGRRLWDAKHENLDNEINKVKKDNDNMQI-----ELRHLKGEDITSLNHRELMMLEDALDNGLTSIRNKQND 139          
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: MAD34_ORYSJ (MADS-box transcription factor 34 OS=Oryza sativa subsp. japonica GN=MADS34 PE=2 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 4.350e-22
Identity = 60/157 (38.22%), Postives = 95/157 (60.51%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFE-SSSSSMKDIIARYNMHSSNISKLNHP-SLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERK 660
            M R K+ +++I+N  +RQVTF+KRR GL KKA ELS+LCDAEV +++FS  G+L++ SSSS+M   + RY  +         P S E+Q    +Y++L   +    +  R + GEDL  L   EL+ LE+ + + L ++   K   +++E+  L+RK
Sbjct:    1 MGRGKVVLQRIENKISRQVTFAKRRNGLLKKAYELSILCDAEVALVLFSHAGRLYQFSSSSNMLKTLERYQRYIYASQDAAAPTSDEMQNNYQEYVNLKAHVEILQQSQRNLLGEDLAPLATNELEQLESQVVRTLKQIRSRKTQVLLDELCDLKRK 157          
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: DEF21_ANTMA (MADS-box protein defh21 OS=Antirrhinum majus GN=DEFH21 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.350e-22
Identity = 61/159 (38.36%), Postives = 94/159 (59.12%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFE--SSSSSMKDIIARYNMHSSNISKLNH---PSLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLER 657
            M R KI++++I+N T+RQVTFSKRR GL KK  ELSVLCDA++G+I+FS  GKL E  +   SMK II RY      + ++ +   P  +      +   +  E  +    L++ +G+DL  +  EEL  LE +L+Q L++V   K + +  ++  L+R
Sbjct:    1 MGRGKIEVKRIENNTSRQVTFSKRRSGLMKKTHELSVLCDAQIGLIVFSTKGKLTEYCTPPFSMKQIIDRYVKAKGILPEMENRAGPHADNDQVIKELTRMKEETLNLQLNLQRYKGDDLSTVRFEELTELEKLLDQSLNKVRARKLELLHEQMENLKR 159          
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: AGL9_SINAL (Agamous-like MADS-box protein AGL9 homolog OS=Sinapis alba GN=AGL9 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.350e-22
Identity = 67/160 (41.88%), Postives = 97/160 (60.62%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFE-SSSSSMKDIIARYNMHSSNISKLNHPSLE-LQLENS---KYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERK 660
            M R ++++++I+N   RQVTF+KRR GL KKA ELSVLCDAEV +IIFS  GKL+E  SSSSM   + RY   +    + N PS E L +E S   +YL L        R  R + GEDL  L+ +EL+ LE  L+  L ++   +   ++++++ L+ K
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMIRTLERYQKCNYGPPEPNVPSREALAVELSSQQEYLKLKERYDALQRTQRNLLGEDLGPLSTKELELLERQLDSSLKQIRALRTQFMLDQLNDLQSK 160          
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: MAD50_ORYSJ (MADS-box transcription factor 50 OS=Oryza sativa subsp. japonica GN=MADS50 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 9.690e-22
Identity = 61/157 (38.85%), Postives = 95/157 (60.51%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYNMHSSNISKLNHPSLELQLENSKYLS--LSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERK 660
            M R K ++++I+N T+RQVTFSKRR GL KKA ELSVLCDAEV +I+FS  GKL+E +S+S +  I RY  ++     + + +++  +E  K  +  L++++       R++ GE L   +IEEL  LE  LE+ L  +   K   +  +++ L  K
Sbjct:    1 MVRGKTQMKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFASASTQKTIERYRTYTK--ENIGNKTVQQDIEQVKADADGLAKKLEALETYKRKLLGEKLDECSIEELHSLEVKLERSLISIRGRKTKLLEEQVAKLREK 155          
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: AGL9_SOLLC (Agamous-like MADS-box protein AGL9 homolog OS=Solanum lycopersicum GN=TDR5 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 9.690e-22
Identity = 63/159 (39.62%), Postives = 93/159 (58.49%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFE-SSSSSMKDIIARYNMHSSNISKLN---HPSLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERK 660
            M R ++++++I+    RQVTF+KRR GL KKA ELSVLCDAEV +IIFS  GKL+E  SSSSM   + RY   +    + N     +LE+     +YL L        R  R + GEDL  L  +EL+ LE  L+  L ++  T+   ++++++  +RK
Sbjct:    1 MGRGRVELKRIEGKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNISTREALEIS-SQQEYLKLKGRYEALQRSQRNLLGEDLGPLNSKELESLERQLDMSLKQIRSTRTQLMLDQLTDYQRK 158          
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: MAD30_ORYSJ (MADS-box transcription factor 30 OS=Oryza sativa subsp. japonica GN=MADS30 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.819e-21
Identity = 60/159 (37.74%), Postives = 95/159 (59.75%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSS--MKDIIARYNMHSSN--ISKLNHPSLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGL-TIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLER 657
            M + KI++++I++ T RQVTFSKRR G  KKA EL+VLCDA+VGV++FS  GKLF+  S    + ++  RY + + N  + + N    ++ +E ++   L  EI      LR+  GEDL  + T++EL  L+  LE  LS+V   K + +  ++  + R
Sbjct:    1 MGQGKIEMKRIEDATRRQVTFSKRRAGFLKKANELAVLCDAQVGVVVFSDKGKLFDFCSPPVILMELFHRYEITTRNTRLQETNRDDEQMVMEITR---LRNEIDQLEASLRRQTGEDLSSVSTVDELSQLQLQLESSLSKVHARKDELMSQQLEDMRR 156          
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: MADS1_PETHY (Floral homeotic protein PMADS 1 OS=Petunia hybrida GN=PMADS1 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.281e-21
Identity = 61/162 (37.65%), Postives = 94/162 (58.02%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYNMHSSNISKLNHPSLELQLENSKYLSLSREI-------ADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERK 660
            MAR KI+I++I+N T RQVT+SKRR GLFKKA EL+VLCDA+V +I+ S+TGKL E  S S+          +  +  L   ++ + L NS Y  +  ++        +  +++RQ  GE L+ L  E+L+ L   ++  L  + + K   I N+I T ++K
Sbjct:    1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMISSTGKLHEFISPSIT---------TKQLFDLYQKTVGVDLWNSHYEKMQEQLRKLKEVNRNLRKEIRQRMGESLNDLNYEQLEELMENVDNSLKLIRERKYKVIGNQIETFKKK 153          
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: MAD16_ORYSJ (MADS-box transcription factor 16 OS=Oryza sativa subsp. japonica GN=MADS16 PE=1 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 8.203e-21
Identity = 66/159 (41.51%), Postives = 92/159 (57.86%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFE--SSSSSMKDIIARYNMHSSNISKLNHPSLELQLEN-SKYLSLSREIADKSR-QLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERK 660
            M R KI+I++I+N T RQVT+SKRR G+ KKA EL+VLCDA+V +I+FS+TGK  E  S S+ +K I  RY         +       Q EN  + LS  ++I    R ++RQ  GEDL GL  +EL+ LE  ++  L  V   K   I  +  T ++K
Sbjct:    1 MGRGKIEIKRIENATNRQVTYSKRRTGIMKKARELTVLCDAQVAIIMFSSTGKYHEFCSPSTDIKGIFDRYQQAIGTSLWIE------QYENMQRTLSHLKDINRNLRTEIRQRMGEDLDGLEFDELRGLEQNVDAALKEVRHRKYHVITTQTETYKKK 153          
The following BLAST results are available for this feature:
BLAST of CX671582 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
AGL8_SOLTU2.550e-2240.00Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
GLOB_TOBAC3.330e-2240.28Floral homeotic protein GLOBOSA OS=Nicotiana tabac... [more]
MAD34_ORYSJ4.350e-2238.22MADS-box transcription factor 34 OS=Oryza sativa s... [more]
DEF21_ANTMA4.350e-2238.36MADS-box protein defh21 OS=Antirrhinum majus GN=DE... [more]
AGL9_SINAL4.350e-2241.88Agamous-like MADS-box protein AGL9 homolog OS=Sina... [more]
MAD50_ORYSJ9.690e-2238.85MADS-box transcription factor 50 OS=Oryza sativa s... [more]
AGL9_SOLLC9.690e-2239.62Agamous-like MADS-box protein AGL9 homolog OS=Sola... [more]
MAD30_ORYSJ2.819e-2137.74MADS-box transcription factor 30 OS=Oryza sativa s... [more]
MADS1_PETHY6.281e-2137.65Floral homeotic protein PMADS 1 OS=Petunia hybrida... [more]
MAD16_ORYSJ8.203e-2141.51MADS-box transcription factor 16 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_11H10_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11H10-P19-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671582 ID=CX671582; Name=CX671582; organism=Citrus sinensis; type=EST; length=778bp
ATAAAGAAAAAGAAATTGAAGATACTGTTTTGCTATAAAAGGGAAGGCAA
CCTTTCCTTTCTCGAACACACAATCCAAGTCTGTCTCTCCGTCTCTATTT
CTTCTCACTTTCTGTAATTGGTGGCTTTAGGTTACTGTGATCAGTCCTGA
ACCAGGCCTCCTATTAGGTAAATACCATATATACATATATAGATTATGGC
GAGAGAGAAGATCAAGATCAGGAAGATTGATAACATAACAGCGAGACAAG
TGACTTTCTCAAAGAGAAGACGAGGCCTTTTCAAGAAAGCAGAAGAGCTT
TCTGTTCTTTGTGATGCTGAGGTTGGAGTCATCATTTTCTCTGCTACTGG
CAAGCTCTTTGAGTCCTCCAGCTCCAGCATGAAGGACATAATTGCAAGGT
ACAACATGCATTCAAGTAACATCAGCAAATTGAATCATCCATCTCTTGAA
CTGCAGTTGGAGAATAGCAAGTATCTCAGTTTGAGCAGGGAAATTGCTGA
TAAGAGCCGTCAACTAAGGCAGATGAGAGGAGAGGATCTTCATGGATTGA
CTATTGAGGAACTCCAGCACCTTGAAACAATGCTTGAACAGGGACTTAGC
CGTGTGCTCCAGACAAAGGGTGACCGGATTATGAATGAGATCTCTACACT
TGAAAGGAAGGGAGCTAAGCTGCTGGAGGAGAACAAGAATCTAAAGCAGA
AGGTGGCCTCCTCGTGCAAGGGAAAAAGAGTTGTTTTAGTGGATTCAGAT
ATTGCTATCCAAGAAGAAGGCATGTCAT
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