CX671582

Overview
NameCX671582
Unique NameCX671582
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length778
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: AP3_ARATH (Floral homeotic protein APETALA 3 OS=Arabidopsis thaliana GN=AP3 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 8.203e-21
Identity = 64/157 (40.76%), Postives = 94/157 (59.87%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFE--SSSSSMKDIIARYNMHSSNISKLNHPSLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERK 660
            MAR KI+I++I+N T RQVT+SKRR GLFKKA EL+VLCDA V +I+FS++ KL E  S +++ K+I+  Y    S++         +Q    K L  +R +     Q++Q  GE L  L I+EL+ LE  +E     V + K   + N+I T ++K
Sbjct:    1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELTVLCDARVSIIMFSSSNKLHEYISPNTTTKEIVDLYQT-ISDVDVWATQYERMQETKRKLLETNRNL---RTQIKQRLGECLDELDIQELRRLEDEMENTFKLVRERKFKSLGNQIETTKKK 153          
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: AGL12_ARATH (Agamous-like MADS-box protein AGL12 OS=Arabidopsis thaliana GN=AGL12 PE=2 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.399e-20
Identity = 72/206 (34.95%), Postives = 112/206 (54.37%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFE-SSSSSMKDIIARY------NMHSSNIS-----KLNHPSLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAXXXXXXXXXXQKVASSCKGKRVVLVDSDIAIQEEGMS 777
            MAR KI++++I+N   RQVTF KRR GL KKA+ELSVLCDAE+GV+IFS  GKLFE ++  +M+ +I +Y         SS+ +     +L  P+L+ + E +    L +EI    + +  M G     + +EEL  LE  LE  +S++   K D ++ EI +L  K            +K+  +       ++D++ A+ E   S
Sbjct:    1 MARGKIQLKRIENPVHRQVTFCKRRTGLLKKAKELSVLCDAEIGVVIFSPQGKLFELATKGTMEGMIDKYMKCTGGGRGSSSATFTAQEQLQPPNLDPKDEIN---VLKQEIEMLQKGISYMFGGGDGAMNLEELLLLEKHLEYWISQIRSAKMDVMLQEIQSLRNKEGVLKNTNKYLLEKIEENNNS----ILDANFAVMETNYS 199          
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: MAD33_ORYSJ (MADS-box transcription factor 33 OS=Oryza sativa subsp. japonica GN=MADS33 PE=2 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 6.944e-20
Identity = 63/157 (40.13%), Postives = 93/157 (59.24%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFE-SSSSSMKDIIARYNMHSSNISKLNHPSLELQLENSKYLSLSREIAD-KSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERK 660
            M R K+++R+I+N   RQVTF KRR GL KKA ELSVLCDA+VGVIIFS+ GKL E +++ +M +++ RY  + +   ++   +L+ Q    + + L RE  D   R LR   G     +T+++L  LE  LE  + ++  TK   +  EI  L  K
Sbjct:    1 MVRGKVQMRRIENPVHRQVTFCKRRGGLLKKARELSVLCDADVGVIIFSSQGKLHELATNGNMHNLVERYQSNVAG-GQMEPGALQRQQVAEQGIFLLREEIDLLQRGLRSTYGGGAGEMTLDKLHALEKGLELWIYQIRTTKMQMMQQEIQFLRNK 156          
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: MAD26_ORYSJ (MADS-box transcription factor 26 OS=Oryza sativa subsp. japonica GN=MADS26 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 9.070e-20
Identity = 60/157 (38.22%), Postives = 96/157 (61.15%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFE-SSSSSMKDIIARYNMHSSNISKLNHPSLELQLENSKYLSLSREIADKSRQLRQMRGEDLH-GLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERK 660
            MAR K+++R+I+N   RQVTF KRR GL KKA ELS+LC+A++G+IIFSA GKL++ +++ +M+++I RY   S++  + N    +      + + L +EI    + LR + G   +  +T+EEL  LE  LE  +  +   K   ++ EI  L+ K
Sbjct:    1 MARGKVQLRRIENPVHRQVTFCKRRAGLLKKARELSILCEADIGIIIFSAHGKLYDLATTGTMEELIERYK--SASGEQANACGDQRMDPKQEAMVLKQEINLLQKGLRYIYGNRANEHMTVEELNALERYLEIWMYNIRSAKMQIMIQEIQALKSK 155          
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: MAD26_ORYSI (MADS-box transcription factor 26 OS=Oryza sativa subsp. indica GN=MADS26 PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 9.070e-20
Identity = 60/157 (38.22%), Postives = 96/157 (61.15%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFE-SSSSSMKDIIARYNMHSSNISKLNHPSLELQLENSKYLSLSREIADKSRQLRQMRGEDLH-GLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERK 660
            MAR K+++R+I+N   RQVTF KRR GL KKA ELS+LC+A++G+IIFSA GKL++ +++ +M+++I RY   S++  + N    +      + + L +EI    + LR + G   +  +T+EEL  LE  LE  +  +   K   ++ EI  L+ K
Sbjct:    1 MARGKVQLRRIENPVHRQVTFCKRRAGLLKKARELSILCEADIGIIIFSAHGKLYDLATTGTMEELIERYK--SASGEQANACGDQRMDPKQEAMVLKQEINLLQKGLRYIYGNRANEHMTVEELNALERYLEIWMYNIRSAKMQIMIQEIQALKSK 155          
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: MADS4_ORYSJ (MADS-box transcription factor 4 OS=Oryza sativa subsp. japonica GN=MADS4 PE=1 SV=3)

HSP 1 Score: 97.0561 bits (240), Expect = 1.185e-19
Identity = 60/141 (42.55%), Postives = 83/141 (58.87%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFE-------SSSSSMKDIIARYNMHSSNIS-KLNHPSLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQG 594
            M R KI+I++I+N T RQVTFSKRR G+ KKA E+ VLCDAEVGV+IFS+ GKL +       S    +  I+ +Y  +S  I     H SL  +++  K     +E  +   +LR M+GEDL+ L  +EL  +E  L  G
Sbjct:    1 MGRGKIEIKRIENSTNRQVTFSKRRAGILKKAREIGVLCDAEVGVVIFSSAGKLSDYCTPKTTSVFPPLSRILEKYQTNSGKILWDEKHKSLSAEIDRVK-----KENDNMQIELRHMKGEDLNSLQPKELIAIEEALNNG 136          
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: MAD31_ORYSJ (MADS-box transcription factor 31 OS=Oryza sativa subsp. japonica GN=MADS31 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.185e-19
Identity = 58/145 (40.00%), Postives = 89/145 (61.38%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMK--DIIARYNMHSSNISKLNHPSL---ELQLENSKYLSLSREIADKSRQ---LRQMRGEDLHGLTIEELQHLETMLEQGLSRV 606
            M R +++++KI+N T RQVTFSKRR GL KKA EL++LCDA++GVI+FS TGK++E SS   +  +I  RY         L  PS    E+ ++      ++R   + +R    +RQ  G+DL  LT++++ +LE  +E  L +V
Sbjct:    1 MGRGRVELKKIENPTNRQVTFSKRRMGLLKKANELAILCDAQIGVIVFSGTGKMYEYSSPPWRIANIFDRY---------LKAPSTRFEEMDVQQRIIQEMTRMKDENNRLRIIMRQYMGDDLASLTLQDVSNLEQQIEFSLYKV 136          
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: GLOB_ANTMA (Floral homeotic protein GLOBOSA OS=Antirrhinum majus GN=GLO PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.185e-19
Identity = 57/138 (41.30%), Postives = 88/138 (63.77%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFE--SSSSSMKDIIARYN-MHSSNISKLNHPSLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLS 600
            M R KI+I++I+N + RQVT+SKRR G+ KKA+E+SVLCDA V VIIF+++GK+ E  S S+++ D++  Y+ +    +    H  L+ ++   K  + S +I     +LR ++GED+  L  +EL  LE  LE G S
Sbjct:    1 MGRGKIEIKRIENSSNRQVTYSKRRNGIMKKAKEISVLCDAHVSVIIFASSGKMHEFCSPSTTLVDMLDHYHKLSGKRLWDPKHEHLDNEINRVKKENDSMQI-----ELRHLKGEDITTLNYKELMVLEDALENGTS 133          
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: DEFA_ANTMA (Floral homeotic protein DEFICIENS OS=Antirrhinum majus GN=DEFA PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.020e-19
Identity = 65/163 (39.88%), Postives = 96/163 (58.90%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFE--SSSSSMKDIIARY------NMHSSNISKLNHPSLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERK 660
            MAR KI+I++I+N T RQVT+SKRR GLFKKA ELSVLCDA+V +I+ S+T KL E  S +++ K +  +Y      ++ SS+  K+      L+  N    +L REI       RQ  GE L+ L  E++ +L   ++  L  + + K   I N+I T ++K
Sbjct:    1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELSVLCDAKVSIIMISSTQKLHEYISPTTATKQLFDQYQKAVGVDLWSSHYEKMQE---HLKKLNEVNRNLRREI-------RQRMGESLNDLGYEQIVNLIEDMDNSLKLIRERKYKVISNQIDTSKKK 153          
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: MADS2_PETHY (Floral homeotic protein PMADS 2 OS=Petunia hybrida GN=PMADS2 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.879e-19
Identity = 59/160 (36.88%), Postives = 95/160 (59.38%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFE--SSSSSMKDIIARYNMHSS-NISKLNHPSLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRV---------LQTKGDRIMNE 639
            M R KI+I++I+N + RQVT+SKRR G+ KKA+E++VLCDA+V +IIF  +GK+ E  S S+++ D++  Y   S   +    H +L  +++  K     +E  +   +LR ++GED++ L  +EL  LE  L  GLS +         +  K D+I+ E
Sbjct:    1 MGRGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAKVSLIIFGNSGKMHEYCSPSTTLPDMLDGYQKTSGRRLWDAKHENLSNEIDRIK-----KENDNMQVKLRHLKGEDINSLNHKELMVLEEGLTNGLSSISAKQSEILRMVRKNDQILEE 155          
The following BLAST results are available for this feature:
BLAST of CX671582 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
AP3_ARATH8.203e-2140.76Floral homeotic protein APETALA 3 OS=Arabidopsis t... [more]
AGL12_ARATH1.399e-2034.95Agamous-like MADS-box protein AGL12 OS=Arabidopsis... [more]
MAD33_ORYSJ6.944e-2040.13MADS-box transcription factor 33 OS=Oryza sativa s... [more]
MAD26_ORYSJ9.070e-2038.22MADS-box transcription factor 26 OS=Oryza sativa s... [more]
MAD26_ORYSI9.070e-2038.22MADS-box transcription factor 26 OS=Oryza sativa s... [more]
MADS4_ORYSJ1.185e-1942.55MADS-box transcription factor 4 OS=Oryza sativa su... [more]
MAD31_ORYSJ1.185e-1940.00MADS-box transcription factor 31 OS=Oryza sativa s... [more]
GLOB_ANTMA1.185e-1941.30Floral homeotic protein GLOBOSA OS=Antirrhinum maj... [more]
DEFA_ANTMA2.020e-1939.88Floral homeotic protein DEFICIENS OS=Antirrhinum m... [more]
MADS2_PETHY5.879e-1936.88Floral homeotic protein PMADS 2 OS=Petunia hybrida... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_11H10_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11H10-P19-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671582 ID=CX671582; Name=CX671582; organism=Citrus sinensis; type=EST; length=778bp
ATAAAGAAAAAGAAATTGAAGATACTGTTTTGCTATAAAAGGGAAGGCAA
CCTTTCCTTTCTCGAACACACAATCCAAGTCTGTCTCTCCGTCTCTATTT
CTTCTCACTTTCTGTAATTGGTGGCTTTAGGTTACTGTGATCAGTCCTGA
ACCAGGCCTCCTATTAGGTAAATACCATATATACATATATAGATTATGGC
GAGAGAGAAGATCAAGATCAGGAAGATTGATAACATAACAGCGAGACAAG
TGACTTTCTCAAAGAGAAGACGAGGCCTTTTCAAGAAAGCAGAAGAGCTT
TCTGTTCTTTGTGATGCTGAGGTTGGAGTCATCATTTTCTCTGCTACTGG
CAAGCTCTTTGAGTCCTCCAGCTCCAGCATGAAGGACATAATTGCAAGGT
ACAACATGCATTCAAGTAACATCAGCAAATTGAATCATCCATCTCTTGAA
CTGCAGTTGGAGAATAGCAAGTATCTCAGTTTGAGCAGGGAAATTGCTGA
TAAGAGCCGTCAACTAAGGCAGATGAGAGGAGAGGATCTTCATGGATTGA
CTATTGAGGAACTCCAGCACCTTGAAACAATGCTTGAACAGGGACTTAGC
CGTGTGCTCCAGACAAAGGGTGACCGGATTATGAATGAGATCTCTACACT
TGAAAGGAAGGGAGCTAAGCTGCTGGAGGAGAACAAGAATCTAAAGCAGA
AGGTGGCCTCCTCGTGCAAGGGAAAAAGAGTTGTTTTAGTGGATTCAGAT
ATTGCTATCCAAGAAGAAGGCATGTCAT
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