CX671582

Overview
NameCX671582
Unique NameCX671582
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length778
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5069 contig Csv1_Contig5069:1..778. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: AGL31_ARATH (Agamous-like MADS-box protein AGL31 OS=Arabidopsis thaliana GN=AGL31 PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 7.678e-19
Identity = 60/195 (30.77%), Postives = 107/195 (54.87%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSS-SSMKDIIARYNMHSSNISKLNHPSLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAXXXXXXXXXXQKVASSCKGKRVVLVDSDIAIQEEGMS 777
            M R+K++I++I+N ++RQVTFSKRR GL +KA +LS+LC++ + V++ S +GKL++S+S  +M  II RY +H ++       +L+L  +   YL L   +     +L +    ++   +++ L  LE  LE  LS     K + +M E+ +L++             Q +AS    K  ++++ D  +  E  S
Sbjct:    1 MGRKKVEIKRIENKSSRQVTFSKRRNGLIEKARQLSILCESSIAVLVVSGSGKLYKSASGDNMSKIIDRYEIHHAD----ELEALDLAEKTRNYLPLKELLEIVQSKLEE---SNVDNASVDTLISLEEQLETALSVTRARKTELMMGEVKSLQK----TENLLREENQTLASQVGKKTFLVIEGDRGMSWENGS 184          
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: CMB2_DIACA (MADS-box protein CMB2 OS=Dianthus caryophyllus GN=CMB2 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.310e-18
Identity = 58/157 (36.94%), Postives = 90/157 (57.32%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKL--FESSSSSMKDIIARYNMHSSNISKLNHPSLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERK 660
            M R K++IRKI+N T RQVTFSKRR G+ KKA+EL+VLCDA+V +++ S+T KL  + S   S+K +   Y      +         +Q ++ K L L+  +    R++ +  G DL GLT+ EL  L+  +E+ + ++   K   I N+  T  +K
Sbjct:    1 MGRGKLEIRKIENKTNRQVTFSKRRNGIMKKAQELTVLCDAKVSLLMISSTHKLHHYLSPGVSLKKMYDEY-QKIEGVDLWRKQWERMQEQHRKVLELNSLL---RREISRRMGGDLEGLTLVELSALQQEMEEAIIQIRNKKYHTIKNQTGTTRKK 153          
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: FLC_ARATH (MADS-box protein FLOWERING LOCUS C OS=Arabidopsis thaliana GN=FLC PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.710e-18
Identity = 59/157 (37.58%), Postives = 94/157 (59.87%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFE-SSSSSMKDIIARY-NMHSSNISKLNHPSLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERK 660
            M R+K++I++I+N ++RQVTFSKRR GL +KA +LSVLCDA V +++ SA+GKL+  SS  ++  I+ RY   H+ ++  L+H S  L    S Y  L  E+ D      ++ G ++  ++I+ L  LE  LE  LS     K + ++  +  L+ K
Sbjct:    1 MGRKKLEIKRIENKSSRQVTFSKRRNGLIEKARQLSVLCDASVALLVVSASGKLYSFSSGDNLVKILDRYGKQHADDLKALDHQSKALNY-GSHYELL--ELVDS-----KLVGSNVKNVSIDALVQLEEHLETALSVTRAKKTELMLKLVENLKEK 149          
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: PIST_ARATH (Floral homeotic protein PISTILLATA OS=Arabidopsis thaliana GN=PI PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.448e-17
Identity = 53/141 (37.59%), Postives = 83/141 (58.87%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYNMHSSNISK----LNHPSLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRV 606
            M R KI+I++I+N   R VTFSKRR GL KKA+E++VLCDA+V +IIF++ GK+ +    SM D+ A  + +     K      H +L  +++  K     +E      +LR ++GED+  L ++ L  +E  +E GL +V
Sbjct:    1 MGRGKIEIKRIENANNRVVTFSKRRNGLVKKAKEITVLCDAKVALIIFASNGKMIDYCCPSM-DLGAMLDQYQKLSGKKLWDAKHENLSNEIDRIK-----KENDSLQLELRHLKGEDIQSLNLKNLMAVEHAIEHGLDKV 135          
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: AP32_ASAEU (MADS-box protein AeAP3-2 (Fragment) OS=Asarum europaeum GN=AP3-2 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.226e-16
Identity = 52/131 (39.69%), Postives = 74/131 (56.49%), Query Frame = 1
Query:  274 GLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS--SMKDIIARYNMHSSNISKLNHPSLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERK 660
            GL KKA EL++LCDA++GVIIFS++GK+FE SS   SM++II RY   S N +    P  + Q    +   +  EI      +R   GEDL  LT+ E+  LE  LE  +++V   K   +  ++  L RK
Sbjct:    2 GLLKKARELAILCDAQLGVIIFSSSGKMFEFSSPPISMREIIDRYQKLSGNCA----PVYDNQQVYCEITRMKNEIDKLQATMRHFAGEDLTSLTMNEMLQLEQQLEISVNKVRSRKEQLLQQQLDNLRRK 128          
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: MAD32_ORYSJ (MADS-box transcription factor 32 OS=Oryza sativa subsp. japonica GN=MADS32 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.312e-15
Identity = 56/159 (35.22%), Postives = 86/159 (54.09%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSS---SSMKDIIARYNMHSSNISKLNHPSLELQLENSKYLSLSR--EIAD-KSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLE 654
            M R + +I++I+N T RQ TF KRR GLFKKA EL+VLCDA++ +++FSA+GKL+   S    S+++ + RY           H  +   +   +   L +   + D   +QLR M  +D    T+  L+ LE  LE  + +V   K  +I  EI  L+
Sbjct:    1 MGRGRSEIKRIENPTQRQSTFYKRRDGLFKKARELAVLCDADLLLLLFSASGKLYHFLSPTVPSVREFVERY-------EATTHTKVWADIRQERRAELEKVGSMCDLLEKQLRFMTVDDGEEYTVPSLEALEHNLEAAMRKVRSEKDRKIGGEICYLQ 152          
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: SRFC_DICDI (Serum factor response C OS=Dictyostelium discoideum GN=srfC PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.147e-14
Identity = 39/78 (50.00%), Postives = 51/78 (65.38%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYNMHSSNISK 429
            M R KI I KI N   RQ TF+KR+ GL KKA ELS+LCD E+ +I+FS+  KLF+ SS  M  ++ RY  ++ N  K
Sbjct:    3 MGRNKITIEKISNERNRQATFTKRKNGLIKKAMELSILCDCEIAMIVFSSNNKLFQYSSRDMDKLLIRYTDNTDNTRK 80          
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: AGL61_ARATH (Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana GN=AGL61 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.712e-14
Identity = 48/122 (39.34%), Postives = 68/122 (55.74%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARY----NMHSSNISKLN---HPSLELQLENSKYLSLSREIADKSRQLRQMRGEDL 540
            + R+KI + KI   + RQVTFSKRR GLFKKA EL  LC AE+G+I+FS   K F     S++ ++ RY    NM  +   +L      S EL ++ +  LS   E   K + + +MR E +
Sbjct:   62 IGRQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKPFSFGHPSVESVLDRYVSRNNMSLAQSQQLQGSPAASCELNMQLTHILSEVEEEKKKGQAMEEMRKESV 183          
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: MEF2C_PONAB (Myocyte-specific enhancer factor 2C OS=Pongo abelii GN=MEF2C PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.820e-13
Identity = 36/73 (49.32%), Postives = 54/73 (73.97%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYNMHS 414
            M R+KI+I +I +   RQVTF+KR+ GL KKA ELSVLCD E+ +IIF++T KLF+ +S+ M  ++ +Y  ++
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYASTDMDKVLLKYTEYN 73          
BLAST of CX671582 vs. ExPASy Swiss-Prot
Match: MEF2C_PIG (Myocyte-specific enhancer factor 2C OS=Sus scrofa GN=MEF2C PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.820e-13
Identity = 36/73 (49.32%), Postives = 54/73 (73.97%), Query Frame = 1
Query:  196 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYNMHS 414
            M R+KI+I +I +   RQVTF+KR+ GL KKA ELSVLCD E+ +IIF++T KLF+ +S+ M  ++ +Y  ++
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYASTDMDKVLLKYTEYN 73          
The following BLAST results are available for this feature:
BLAST of CX671582 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
AGL31_ARATH7.678e-1930.77Agamous-like MADS-box protein AGL31 OS=Arabidopsis... [more]
CMB2_DIACA1.310e-1836.94MADS-box protein CMB2 OS=Dianthus caryophyllus GN=... [more]
FLC_ARATH1.710e-1837.58MADS-box protein FLOWERING LOCUS C OS=Arabidopsis ... [more]
PIST_ARATH1.448e-1737.59Floral homeotic protein PISTILLATA OS=Arabidopsis ... [more]
AP32_ASAEU1.226e-1639.69MADS-box protein AeAP3-2 (Fragment) OS=Asarum euro... [more]
MAD32_ORYSJ2.312e-1535.22MADS-box transcription factor 32 OS=Oryza sativa s... [more]
SRFC_DICDI1.147e-1450.00Serum factor response C OS=Dictyostelium discoideu... [more]
AGL61_ARATH9.712e-1439.34Agamous-like MADS-box protein AGL61 OS=Arabidopsis... [more]
MEF2C_PONAB4.820e-1349.32Myocyte-specific enhancer factor 2C OS=Pongo abeli... [more]
MEF2C_PIG4.820e-1349.32Myocyte-specific enhancer factor 2C OS=Sus scrofa ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_11H10_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11H10-P19-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671582 ID=CX671582; Name=CX671582; organism=Citrus sinensis; type=EST; length=778bp
ATAAAGAAAAAGAAATTGAAGATACTGTTTTGCTATAAAAGGGAAGGCAA
CCTTTCCTTTCTCGAACACACAATCCAAGTCTGTCTCTCCGTCTCTATTT
CTTCTCACTTTCTGTAATTGGTGGCTTTAGGTTACTGTGATCAGTCCTGA
ACCAGGCCTCCTATTAGGTAAATACCATATATACATATATAGATTATGGC
GAGAGAGAAGATCAAGATCAGGAAGATTGATAACATAACAGCGAGACAAG
TGACTTTCTCAAAGAGAAGACGAGGCCTTTTCAAGAAAGCAGAAGAGCTT
TCTGTTCTTTGTGATGCTGAGGTTGGAGTCATCATTTTCTCTGCTACTGG
CAAGCTCTTTGAGTCCTCCAGCTCCAGCATGAAGGACATAATTGCAAGGT
ACAACATGCATTCAAGTAACATCAGCAAATTGAATCATCCATCTCTTGAA
CTGCAGTTGGAGAATAGCAAGTATCTCAGTTTGAGCAGGGAAATTGCTGA
TAAGAGCCGTCAACTAAGGCAGATGAGAGGAGAGGATCTTCATGGATTGA
CTATTGAGGAACTCCAGCACCTTGAAACAATGCTTGAACAGGGACTTAGC
CGTGTGCTCCAGACAAAGGGTGACCGGATTATGAATGAGATCTCTACACT
TGAAAGGAAGGGAGCTAAGCTGCTGGAGGAGAACAAGAATCTAAAGCAGA
AGGTGGCCTCCTCGTGCAAGGGAAAAAGAGTTGTTTTAGTGGATTCAGAT
ATTGCTATCCAAGAAGAAGGCATGTCAT
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