CX671554

Overview
NameCX671554
Unique NameCX671554
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length732
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4030 contig Csv1_Contig4030:74..805. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671554 vs. ExPASy Swiss-Prot
Match: H2A4_ARATH (Probable histone H2A.4 OS=Arabidopsis thaliana GN=At5g02560 PE=1 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 6.009e-39
Identity = 83/105 (79.05%), Postives = 86/105 (81.90%), Query Frame = -3
Query:  263 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 577
            SRSVK+GLQFPVGRIGRYLKKGRYS+RVGTGAP                 AGNAARDNKKNRIIPRHVLLAVRNDEELG LL GVTIAHGGVLPNINP+LLPKKS
Sbjct:   26 SRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGTLLKGVTIAHGGVLPNINPILLPKKS 130          
BLAST of CX671554 vs. ExPASy Swiss-Prot
Match: H2A_PETCR (Histone H2A OS=Petroselinum crispum PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.339e-38
Identity = 82/105 (78.10%), Postives = 86/105 (81.90%), Query Frame = -3
Query:  263 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 577
            +RSVKAGLQFPVGRIGRYLKKGRY+QRVGTGAP                 AGNAARDNKK RIIPRH+LLAVRNDEELGKLLAGVT AHGGVLPNINPVLLPKK+
Sbjct:   24 TRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIIPRHLLLAVRNDEELGKLLAGVTFAHGGVLPNINPVLLPKKT 128          
BLAST of CX671554 vs. ExPASy Swiss-Prot
Match: H2A_MAIZE (Histone H2A OS=Zea mays PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.748e-38
Identity = 82/105 (78.10%), Postives = 85/105 (80.95%), Query Frame = -3
Query:  263 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 577
            SRSVKAGLQFPVGRIGRYLKKGRY+Q VGTGAP                 AGNAARDNKK RIIPRHVLLA+RNDEELGKLL GVTIAHGGVLPNINPVLLPKK+
Sbjct:   30 SRSVKAGLQFPVGRIGRYLKKGRYAQXVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIIPRHVLLAIRNDEELGKLLGGVTIAHGGVLPNINPVLLPKKT 134          
BLAST of CX671554 vs. ExPASy Swiss-Prot
Match: H2A1_SOLLC (Histone H2A.1 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.644e-38
Identity = 81/105 (77.14%), Postives = 87/105 (82.86%), Query Frame = -3
Query:  263 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 577
            ++S+KAGLQFPVGRIGRYLKKGRY+QRVG+GAP                 AGNAARDNKK+RIIPRHVLLAVRNDEELGKLLAGVTIA GGVLPNINPVLLPKKS
Sbjct:   23 TKSIKAGLQFPVGRIGRYLKKGRYAQRVGSGAPIYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHVLLAVRNDEELGKLLAGVTIASGGVLPNINPVLLPKKS 127          
BLAST of CX671554 vs. ExPASy Swiss-Prot
Match: H2A3_WHEAT (Histone H2A.2.2 OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.297e-37
Identity = 76/105 (72.38%), Postives = 88/105 (83.81%), Query Frame = -3
Query:  263 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 577
            +RS+KAGLQFPVGRIGRYLKKGRY+QRVG+GAP                 AGNAA+DNKK+RI+PRH+LLAVRND+ELG+LLAGVTIAHGGV+PNINPVLLPKK+
Sbjct:   23 TRSIKAGLQFPVGRIGRYLKKGRYAQRVGSGAPVYLAAVLEYLAAEVLELAGNAAKDNKKSRIVPRHLLLAVRNDQELGRLLAGVTIAHGGVIPNINPVLLPKKA 127          
BLAST of CX671554 vs. ExPASy Swiss-Prot
Match: H2A1_PEA (Histone H2A.1 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.624e-37
Identity = 78/104 (75.00%), Postives = 86/104 (82.69%), Query Frame = -3
Query:  266 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 577
            +RSV+AGLQFPVGR+GR+LKKGRY+QRVGTGAP                 AGNAARDNKKNRI PRH+LLAVRNDEELGKLLAGVTIA+GGVLPNINPVLLPK+
Sbjct:   25 TRSVRAGLQFPVGRVGRFLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRISPRHLLLAVRNDEELGKLLAGVTIAYGGVLPNINPVLLPKR 128          
BLAST of CX671554 vs. ExPASy Swiss-Prot
Match: H2A5_WHEAT (Protein H2A.5 OS=Triticum aestivum GN=H2A-2 PE=2 SV=3)

HSP 1 Score: 153.68 bits (387), Expect = 9.593e-37
Identity = 78/105 (74.29%), Postives = 86/105 (81.90%), Query Frame = -3
Query:  263 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 577
            +RSVKAGLQFPVGRIGRYLKKGRY+QRVG+GAP                 AGNAA+DNKK RIIPRH+LLAVRND+ELG+LLAGVTIAHGGV+PNIN VLLPKKS
Sbjct:   14 TRSVKAGLQFPVGRIGRYLKKGRYAQRVGSGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRIIPRHLLLAVRNDQELGRLLAGVTIAHGGVIPNINSVLLPKKS 118          
BLAST of CX671554 vs. ExPASy Swiss-Prot
Match: H2A1_WHEAT (Histone H2A.1 OS=Triticum aestivum GN=H2A-9 PE=1 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 9.593e-37
Identity = 78/105 (74.29%), Postives = 86/105 (81.90%), Query Frame = -3
Query:  263 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 577
            +RSVKAGLQFPVGRIGRYLKKGRY+QRVG+GAP                 AGNAA+DNKK RIIPRH+LLAVRND+ELG+LLAGVTIAHGGV+PNIN VLLPKKS
Sbjct:   14 TRSVKAGLQFPVGRIGRYLKKGRYAQRVGSGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRIIPRHLLLAVRNDQELGRLLAGVTIAHGGVIPNINSVLLPKKS 118          
BLAST of CX671554 vs. ExPASy Swiss-Prot
Match: H2A2_PEA (Histone H2A.2 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.137e-36
Identity = 78/105 (74.29%), Postives = 86/105 (81.90%), Query Frame = -3
Query:  263 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 577
            +RSV+AGLQFPVGRIGR+LKKGRY+QRVGTGAP                 AGNAARDNKKNRI PRH+LLAVRND ELGKLLAGVTIA+GGVLPNINPVLLPK++
Sbjct:   25 TRSVRAGLQFPVGRIGRFLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRISPRHLLLAVRNDVELGKLLAGVTIAYGGVLPNINPVLLPKRT 129          
BLAST of CX671554 vs. ExPASy Swiss-Prot
Match: H2A2_WHEAT (Histone H2A.2.1 OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.791e-36
Identity = 73/105 (69.52%), Postives = 87/105 (82.86%), Query Frame = -3
Query:  263 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 577
            ++S+KAGLQFPVGRIGRYLKKGRY+QRVG+GAP                 AGNAA+DNKK RI+PRH+LLA+RND+ELG+LL+GVTIAHGGV+PNINPVLLPKK+
Sbjct:   23 TKSIKAGLQFPVGRIGRYLKKGRYAQRVGSGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRIVPRHLLLAIRNDQELGRLLSGVTIAHGGVIPNINPVLLPKKA 127          
The following BLAST results are available for this feature:
BLAST of CX671554 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238
Match NameE-valueIdentityDescription
H2A4_ARATH6.009e-3979.05Probable histone H2A.4 OS=Arabidopsis thaliana GN=... [more]
H2A_PETCR1.339e-3878.10Histone H2A OS=Petroselinum crispum PE=2 SV=1[more]
H2A_MAIZE1.748e-3878.10Histone H2A OS=Zea mays PE=2 SV=1[more]
H2A1_SOLLC6.644e-3877.14Histone H2A.1 OS=Solanum lycopersicum PE=2 SV=1[more]
H2A3_WHEAT3.297e-3772.38Histone H2A.2.2 OS=Triticum aestivum PE=1 SV=1[more]
H2A1_PEA5.624e-3775.00Histone H2A.1 OS=Pisum sativum PE=2 SV=1[more]
H2A5_WHEAT9.593e-3774.29Protein H2A.5 OS=Triticum aestivum GN=H2A-2 PE=2 S... [more]
H2A1_WHEAT9.593e-3774.29Histone H2A.1 OS=Triticum aestivum GN=H2A-9 PE=1 S... [more]
H2A2_PEA2.137e-3674.29Histone H2A.2 OS=Pisum sativum PE=2 SV=1[more]
H2A2_WHEAT2.791e-3669.52Histone H2A.2.1 OS=Triticum aestivum PE=1 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS10_11G06_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11G06-N11-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671554 ID=CX671554; Name=CX671554; organism=Citrus sinensis; type=EST; length=732bp
TTTTTTTTTTTTTTTTTATCGGAACAAGTACCATGATTTCATTCATTCTA
CAGTCCAAGCAAAAGAAGTTCTACACAGTGACGGACAATTAAAAACAGTA
GAATGGTCCCTAAATCCTACGAGCATGAAGCTTTCCTACAAGCCGAATAC
ATCAAAGAAGTAACATACACACAGTTAAAGATGAGAAGACTAAAAACTAA
GCCTTCTTTGGGGACTTAGTGGCCTTGGCTGGAGACTTCGGCTCTTTCGT
TGCTGCCTTCTCAGATTTTTTCGGCAGAAGAACTGGGTTGATGTTTGGCA
AGACTCCACCATGAGCAATTGTCACACCAGCAAGAAGCTTCCCAAGCTCC
TCATCGTTTCTTACAGCCAATAAAACATGCCTTGGGATGATCCTATTCTT
CTTGTTGTCCCTCGCTGCATTACCAGCCAACTCAAGAACCTCAGCTGCGA
GGTACTCAAGTACAGCAGCAAGATAGACCGGAGCGCCGGTTCCCACACGC
TGAGAGTAGCGTCCCTTCTTCAGATAGCGACCGATCCGACCGACCGGGAA
CTGCAGACCGGCTTTCACCGACCGCGAGACCGGTTTCTTCTTTGGACCAC
CCCCTTTCCTTCCTCCTGCTCCTCTCTTCACCTTTCCTCCACTCTCCATC
ACACCAGCAAAGTCAAGAAGAAGTTAGGGGGGAGAAAAAAATGGCAAAAA
CAAAATTTTCTCGAGAAACAAACGGAAACTAA
back to top