CX671554
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX671554 vs. ExPASy Swiss-Prot
Match: H2A4_ARATH (Probable histone H2A.4 OS=Arabidopsis thaliana GN=At5g02560 PE=1 SV=1) HSP 1 Score: 160.999 bits (406), Expect = 6.009e-39 Identity = 83/105 (79.05%), Postives = 86/105 (81.90%), Query Frame = -3 Query: 263 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 577 SRSVK+GLQFPVGRIGRYLKKGRYS+RVGTGAP AGNAARDNKKNRIIPRHVLLAVRNDEELG LL GVTIAHGGVLPNINP+LLPKKS Sbjct: 26 SRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGTLLKGVTIAHGGVLPNINPILLPKKS 130
BLAST of CX671554 vs. ExPASy Swiss-Prot
Match: H2A_PETCR (Histone H2A OS=Petroselinum crispum PE=2 SV=1) HSP 1 Score: 159.844 bits (403), Expect = 1.339e-38 Identity = 82/105 (78.10%), Postives = 86/105 (81.90%), Query Frame = -3 Query: 263 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 577 +RSVKAGLQFPVGRIGRYLKKGRY+QRVGTGAP AGNAARDNKK RIIPRH+LLAVRNDEELGKLLAGVT AHGGVLPNINPVLLPKK+ Sbjct: 24 TRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIIPRHLLLAVRNDEELGKLLAGVTFAHGGVLPNINPVLLPKKT 128
BLAST of CX671554 vs. ExPASy Swiss-Prot
Match: H2A_MAIZE (Histone H2A OS=Zea mays PE=2 SV=1) HSP 1 Score: 159.458 bits (402), Expect = 1.748e-38 Identity = 82/105 (78.10%), Postives = 85/105 (80.95%), Query Frame = -3 Query: 263 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 577 SRSVKAGLQFPVGRIGRYLKKGRY+Q VGTGAP AGNAARDNKK RIIPRHVLLA+RNDEELGKLL GVTIAHGGVLPNINPVLLPKK+ Sbjct: 30 SRSVKAGLQFPVGRIGRYLKKGRYAQXVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIIPRHVLLAIRNDEELGKLLGGVTIAHGGVLPNINPVLLPKKT 134
BLAST of CX671554 vs. ExPASy Swiss-Prot
Match: H2A1_SOLLC (Histone H2A.1 OS=Solanum lycopersicum PE=2 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 6.644e-38 Identity = 81/105 (77.14%), Postives = 87/105 (82.86%), Query Frame = -3 Query: 263 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 577 ++S+KAGLQFPVGRIGRYLKKGRY+QRVG+GAP AGNAARDNKK+RIIPRHVLLAVRNDEELGKLLAGVTIA GGVLPNINPVLLPKKS Sbjct: 23 TKSIKAGLQFPVGRIGRYLKKGRYAQRVGSGAPIYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHVLLAVRNDEELGKLLAGVTIASGGVLPNINPVLLPKKS 127
BLAST of CX671554 vs. ExPASy Swiss-Prot
Match: H2A3_WHEAT (Histone H2A.2.2 OS=Triticum aestivum PE=1 SV=1) HSP 1 Score: 155.221 bits (391), Expect = 3.297e-37 Identity = 76/105 (72.38%), Postives = 88/105 (83.81%), Query Frame = -3 Query: 263 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 577 +RS+KAGLQFPVGRIGRYLKKGRY+QRVG+GAP AGNAA+DNKK+RI+PRH+LLAVRND+ELG+LLAGVTIAHGGV+PNINPVLLPKK+ Sbjct: 23 TRSIKAGLQFPVGRIGRYLKKGRYAQRVGSGAPVYLAAVLEYLAAEVLELAGNAAKDNKKSRIVPRHLLLAVRNDQELGRLLAGVTIAHGGVIPNINPVLLPKKA 127
BLAST of CX671554 vs. ExPASy Swiss-Prot
Match: H2A1_PEA (Histone H2A.1 OS=Pisum sativum PE=2 SV=1) HSP 1 Score: 154.451 bits (389), Expect = 5.624e-37 Identity = 78/104 (75.00%), Postives = 86/104 (82.69%), Query Frame = -3 Query: 266 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 577 +RSV+AGLQFPVGR+GR+LKKGRY+QRVGTGAP AGNAARDNKKNRI PRH+LLAVRNDEELGKLLAGVTIA+GGVLPNINPVLLPK+ Sbjct: 25 TRSVRAGLQFPVGRVGRFLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRISPRHLLLAVRNDEELGKLLAGVTIAYGGVLPNINPVLLPKR 128
BLAST of CX671554 vs. ExPASy Swiss-Prot
Match: H2A5_WHEAT (Protein H2A.5 OS=Triticum aestivum GN=H2A-2 PE=2 SV=3) HSP 1 Score: 153.68 bits (387), Expect = 9.593e-37 Identity = 78/105 (74.29%), Postives = 86/105 (81.90%), Query Frame = -3 Query: 263 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 577 +RSVKAGLQFPVGRIGRYLKKGRY+QRVG+GAP AGNAA+DNKK RIIPRH+LLAVRND+ELG+LLAGVTIAHGGV+PNIN VLLPKKS Sbjct: 14 TRSVKAGLQFPVGRIGRYLKKGRYAQRVGSGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRIIPRHLLLAVRNDQELGRLLAGVTIAHGGVIPNINSVLLPKKS 118
BLAST of CX671554 vs. ExPASy Swiss-Prot
Match: H2A1_WHEAT (Histone H2A.1 OS=Triticum aestivum GN=H2A-9 PE=1 SV=2) HSP 1 Score: 153.68 bits (387), Expect = 9.593e-37 Identity = 78/105 (74.29%), Postives = 86/105 (81.90%), Query Frame = -3 Query: 263 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 577 +RSVKAGLQFPVGRIGRYLKKGRY+QRVG+GAP AGNAA+DNKK RIIPRH+LLAVRND+ELG+LLAGVTIAHGGV+PNIN VLLPKKS Sbjct: 14 TRSVKAGLQFPVGRIGRYLKKGRYAQRVGSGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRIIPRHLLLAVRNDQELGRLLAGVTIAHGGVIPNINSVLLPKKS 118
BLAST of CX671554 vs. ExPASy Swiss-Prot
Match: H2A2_PEA (Histone H2A.2 OS=Pisum sativum PE=2 SV=1) HSP 1 Score: 152.525 bits (384), Expect = 2.137e-36 Identity = 78/105 (74.29%), Postives = 86/105 (81.90%), Query Frame = -3 Query: 263 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 577 +RSV+AGLQFPVGRIGR+LKKGRY+QRVGTGAP AGNAARDNKKNRI PRH+LLAVRND ELGKLLAGVTIA+GGVLPNINPVLLPK++ Sbjct: 25 TRSVRAGLQFPVGRIGRFLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRISPRHLLLAVRNDVELGKLLAGVTIAYGGVLPNINPVLLPKRT 129
BLAST of CX671554 vs. ExPASy Swiss-Prot
Match: H2A2_WHEAT (Histone H2A.2.1 OS=Triticum aestivum PE=1 SV=1) HSP 1 Score: 152.14 bits (383), Expect = 2.791e-36 Identity = 73/105 (69.52%), Postives = 87/105 (82.86%), Query Frame = -3 Query: 263 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 577 ++S+KAGLQFPVGRIGRYLKKGRY+QRVG+GAP AGNAA+DNKK RI+PRH+LLA+RND+ELG+LL+GVTIAHGGV+PNINPVLLPKK+ Sbjct: 23 TKSIKAGLQFPVGRIGRYLKKGRYAQRVGSGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRIVPRHLLLAIRNDQELGRLLSGVTIAHGGVIPNINPVLLPKKA 127 The following BLAST results are available for this feature:
BLAST of CX671554 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 238
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Sequences
The
following sequences are available for this feature:
EST sequence >CX671554 ID=CX671554; Name=CX671554; organism=Citrus sinensis; type=EST; length=732bpback to top |