CX671554
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX671554 vs. ExPASy Swiss-Prot
Match: H2AZL_XENLA (Histone H2A.Z-like OS=Xenopus laevis GN=h2a.zl1 PE=2 SV=3) HSP 1 Score: 76.2554 bits (186), Expect = 1.947e-13 Identity = 50/105 (47.62%), Postives = 61/105 (58.10%), Query Frame = -3 Query: 266 SRSVKAGLQFPVGRIGRYLKKGRYSQ-RVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 577 +RS +AGLQFPVGRI R LK S RVG A AGNA++D K RI PRH+ LA+R DEEL L+ TIA GGV+P+I+ L+ KK Sbjct: 19 TRSSRAGLQFPVGRIHRLLKNRTTSHGRVGGTAAVYTAAILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDALIK-ATIAGGGVIPHIHKSLIGKK 122
BLAST of CX671554 vs. ExPASy Swiss-Prot
Match: H2AV3_ARATH (Probable histone H2A variant 3 OS=Arabidopsis thaliana GN=At1g52740 PE=1 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.947e-13 Identity = 48/106 (45.28%), Postives = 62/106 (58.49%), Query Frame = -3 Query: 263 SRSVKAGLQFPVGRIGRYLK-KGRYSQRVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 577 +RS +AGLQFPVGR+ R LK + RVG A AGNA++D K RI PRH+ LA+R DEEL L+ G TIA GGV+P+I+ L+ K + Sbjct: 28 TRSSRAGLQFPVGRVHRLLKTRSTAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSA 132
BLAST of CX671554 vs. ExPASy Swiss-Prot
Match: H2AV2_ARATH (Probable histone H2A variant 2 OS=Arabidopsis thaliana GN=At2g38810 PE=1 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.947e-13 Identity = 49/104 (47.12%), Postives = 62/104 (59.62%), Query Frame = -3 Query: 269 SRSVKAGLQFPVGRIGRYLKKGRYSQ-RVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 577 SRS +AG+QFPVGRI R LK+ + RVG A AGNA++D K RI PRH+ LA+R DEEL L+ G TIA GGV+P+I+ L+ K Sbjct: 30 SRSSRAGIQFPVGRIHRQLKQRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLVNK 132
BLAST of CX671554 vs. ExPASy Swiss-Prot
Match: H2A2_LEIIN (Histone H2A.2 OS=Leishmania infantum PE=2 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 4.336e-13 Identity = 40/106 (37.74%), Postives = 64/106 (60.38%), Query Frame = -3 Query: 266 SRSVKAGLQFPVGRIGRYLKKGRYSQRVG-TGAPXXXXXXXXXXXXXXXXXAGNAARDNKKN-RIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 577 S+S K GL FPVGR+G +++G+Y++R+G +GA AA+ KK R+ PR V+LA R+D+++G LL VT++H GV+P+++ + KK Sbjct: 16 SKSAKCGLIFPVGRVGGMMRRGQYARRIGASGAVYLAAVLEYLTAELLELSVKAAAQSGKKRCRLNPRTVMLAARHDDDIGTLLKNVTLSHSGVVPSVSKAVAKKK 121
BLAST of CX671554 vs. ExPASy Swiss-Prot
Match: H2A2_LILLO (Histone H2A.2 OS=Lilium longiflorum GN=gH2A PE=1 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 7.397e-13 Identity = 44/103 (42.72%), Postives = 55/103 (53.40%), Query Frame = -3 Query: 266 RSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 574 RS KA LQF V R+ LKKGRY +R+G AP A N +K+ I PRH++LAVRND E+ KL GVTI+ GV+P L +K Sbjct: 18 RSEKAALQFSVSRVEYSLKKGRYCRRLGATAPVYLAAVLENLVAEVLEMAANVTEKHKRIVIKPRHIMLAVRNDVEVNKLFHGVTISASGVVPKTRKELDRRK 120
BLAST of CX671554 vs. ExPASy Swiss-Prot
Match: H2AZ_USTMA (Histone H2A.Z OS=Ustilago maydis GN=HTZ1 PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 9.660e-13 Identity = 45/106 (42.45%), Postives = 61/106 (57.55%), Query Frame = -3 Query: 263 SRSVKAGLQFPVGRIGRYLKKGRYSQ-RVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 577 ++S +AGLQFPVGRI R+LK + R+G A AGNA++D + RI PRH+ LA+R DEEL ++ TIA GGVLP+I+ L+ S Sbjct: 25 TQSARAGLQFPVGRIHRHLKSRTQNHVRIGAKAAVYTSAILEYLTAEVLELAGNASKDMRLKRITPRHLQLAIRGDEELDSMVR-ATIAGGGVLPHIHKTLIKAPS 129
BLAST of CX671554 vs. ExPASy Swiss-Prot
Match: H2AX_DICDI (Histone H2A.x OS=Dictyostelium discoideum GN=H2AX PE=1 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.648e-12 Identity = 41/94 (43.62%), Postives = 53/94 (56.38%), Query Frame = -3 Query: 296 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLP 577 SRS +AG+ FPV R+ R L++GR++ RV + AP A N +KK RI P+H+ AV ND EL L VTIA+GGVLP Sbjct: 36 SRSARAGITFPVSRVDRLLREGRFAPRVESTAPVYLAAVLEYLVFEILELAHNTCSISKKTRITPQHINWAVGNDLELNSLFQHVTIAYGGVLP 129
BLAST of CX671554 vs. ExPASy Swiss-Prot
Match: H2AV1_DICDI (Histone H2A.v1 OS=Dictyostelium discoideum GN=H2Av1 PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.108e-11 Identity = 41/106 (38.68%), Postives = 58/106 (54.72%), Query Frame = -3 Query: 266 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLL--PKK 577 SRS +A L FPV RI + +++GR+++R + AP + A K RI P+H+ L++ D EL LL VTIA+GGV I+P+LL PKK Sbjct: 132 SRSARADLTFPVSRIEKMIREGRFTKRCSSDAPVFLAAVLEYLTLEILELSITYANQKNKTRITPQHIHLSICCDAELNDLLKNVTIANGGVPKFIHPILLDTPKK 237 The following BLAST results are available for this feature:
BLAST of CX671554 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 238
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Sequences
The
following sequences are available for this feature:
EST sequence >CX671554 ID=CX671554; Name=CX671554; organism=Citrus sinensis; type=EST; length=732bpback to top |