CX671554

Overview
NameCX671554
Unique NameCX671554
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length732
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4030 contig Csv1_Contig4030:74..805. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671554 vs. ExPASy Swiss-Prot
Match: H2AZL_XENLA (Histone H2A.Z-like OS=Xenopus laevis GN=h2a.zl1 PE=2 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 1.947e-13
Identity = 50/105 (47.62%), Postives = 61/105 (58.10%), Query Frame = -3
Query:  266 SRSVKAGLQFPVGRIGRYLKKGRYSQ-RVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 577
            +RS +AGLQFPVGRI R LK    S  RVG  A                  AGNA++D K  RI PRH+ LA+R DEEL  L+   TIA GGV+P+I+  L+ KK
Sbjct:   19 TRSSRAGLQFPVGRIHRLLKNRTTSHGRVGGTAAVYTAAILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDALIK-ATIAGGGVIPHIHKSLIGKK 122          
BLAST of CX671554 vs. ExPASy Swiss-Prot
Match: H2AV3_ARATH (Probable histone H2A variant 3 OS=Arabidopsis thaliana GN=At1g52740 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.947e-13
Identity = 48/106 (45.28%), Postives = 62/106 (58.49%), Query Frame = -3
Query:  263 SRSVKAGLQFPVGRIGRYLK-KGRYSQRVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 577
            +RS +AGLQFPVGR+ R LK +     RVG  A                  AGNA++D K  RI PRH+ LA+R DEEL  L+ G TIA GGV+P+I+  L+ K +
Sbjct:   28 TRSSRAGLQFPVGRVHRLLKTRSTAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSA 132          
BLAST of CX671554 vs. ExPASy Swiss-Prot
Match: H2AV2_ARATH (Probable histone H2A variant 2 OS=Arabidopsis thaliana GN=At2g38810 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.947e-13
Identity = 49/104 (47.12%), Postives = 62/104 (59.62%), Query Frame = -3
Query:  269 SRSVKAGLQFPVGRIGRYLKKGRYSQ-RVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 577
            SRS +AG+QFPVGRI R LK+   +  RVG  A                  AGNA++D K  RI PRH+ LA+R DEEL  L+ G TIA GGV+P+I+  L+ K
Sbjct:   30 SRSSRAGIQFPVGRIHRQLKQRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLVNK 132          
BLAST of CX671554 vs. ExPASy Swiss-Prot
Match: H2A2_LEIIN (Histone H2A.2 OS=Leishmania infantum PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.336e-13
Identity = 40/106 (37.74%), Postives = 64/106 (60.38%), Query Frame = -3
Query:  266 SRSVKAGLQFPVGRIGRYLKKGRYSQRVG-TGAPXXXXXXXXXXXXXXXXXAGNAARDNKKN-RIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 577
            S+S K GL FPVGR+G  +++G+Y++R+G +GA                     AA+  KK  R+ PR V+LA R+D+++G LL  VT++H GV+P+++  +  KK
Sbjct:   16 SKSAKCGLIFPVGRVGGMMRRGQYARRIGASGAVYLAAVLEYLTAELLELSVKAAAQSGKKRCRLNPRTVMLAARHDDDIGTLLKNVTLSHSGVVPSVSKAVAKKK 121          
BLAST of CX671554 vs. ExPASy Swiss-Prot
Match: H2A2_LILLO (Histone H2A.2 OS=Lilium longiflorum GN=gH2A PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.397e-13
Identity = 44/103 (42.72%), Postives = 55/103 (53.40%), Query Frame = -3
Query:  266 RSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 574
            RS KA LQF V R+   LKKGRY +R+G  AP                 A N    +K+  I PRH++LAVRND E+ KL  GVTI+  GV+P     L  +K
Sbjct:   18 RSEKAALQFSVSRVEYSLKKGRYCRRLGATAPVYLAAVLENLVAEVLEMAANVTEKHKRIVIKPRHIMLAVRNDVEVNKLFHGVTISASGVVPKTRKELDRRK 120          
BLAST of CX671554 vs. ExPASy Swiss-Prot
Match: H2AZ_USTMA (Histone H2A.Z OS=Ustilago maydis GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.660e-13
Identity = 45/106 (42.45%), Postives = 61/106 (57.55%), Query Frame = -3
Query:  263 SRSVKAGLQFPVGRIGRYLKKGRYSQ-RVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 577
            ++S +AGLQFPVGRI R+LK    +  R+G  A                  AGNA++D +  RI PRH+ LA+R DEEL  ++   TIA GGVLP+I+  L+   S
Sbjct:   25 TQSARAGLQFPVGRIHRHLKSRTQNHVRIGAKAAVYTSAILEYLTAEVLELAGNASKDMRLKRITPRHLQLAIRGDEELDSMVR-ATIAGGGVLPHIHKTLIKAPS 129          
BLAST of CX671554 vs. ExPASy Swiss-Prot
Match: H2AX_DICDI (Histone H2A.x OS=Dictyostelium discoideum GN=H2AX PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.648e-12
Identity = 41/94 (43.62%), Postives = 53/94 (56.38%), Query Frame = -3
Query:  296 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLP 577
            SRS +AG+ FPV R+ R L++GR++ RV + AP                 A N    +KK RI P+H+  AV ND EL  L   VTIA+GGVLP
Sbjct:   36 SRSARAGITFPVSRVDRLLREGRFAPRVESTAPVYLAAVLEYLVFEILELAHNTCSISKKTRITPQHINWAVGNDLELNSLFQHVTIAYGGVLP 129          
BLAST of CX671554 vs. ExPASy Swiss-Prot
Match: H2AV1_DICDI (Histone H2A.v1 OS=Dictyostelium discoideum GN=H2Av1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.108e-11
Identity = 41/106 (38.68%), Postives = 58/106 (54.72%), Query Frame = -3
Query:  266 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLL--PKK 577
            SRS +A L FPV RI + +++GR+++R  + AP                 +   A    K RI P+H+ L++  D EL  LL  VTIA+GGV   I+P+LL  PKK
Sbjct:  132 SRSARADLTFPVSRIEKMIREGRFTKRCSSDAPVFLAAVLEYLTLEILELSITYANQKNKTRITPQHIHLSICCDAELNDLLKNVTIANGGVPKFIHPILLDTPKK 237          
The following BLAST results are available for this feature:
BLAST of CX671554 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238
Match NameE-valueIdentityDescription
H2AZL_XENLA1.947e-1347.62Histone H2A.Z-like OS=Xenopus laevis GN=h2a.zl1 PE... [more]
H2AV3_ARATH1.947e-1345.28Probable histone H2A variant 3 OS=Arabidopsis thal... [more]
H2AV2_ARATH1.947e-1347.12Probable histone H2A variant 2 OS=Arabidopsis thal... [more]
H2A2_LEIIN4.336e-1337.74Histone H2A.2 OS=Leishmania infantum PE=2 SV=1[more]
H2A2_LILLO7.397e-1342.72Histone H2A.2 OS=Lilium longiflorum GN=gH2A PE=1 S... [more]
H2AZ_USTMA9.660e-1342.45Histone H2A.Z OS=Ustilago maydis GN=HTZ1 PE=3 SV=1[more]
H2AX_DICDI1.648e-1243.62Histone H2A.x OS=Dictyostelium discoideum GN=H2AX ... [more]
H2AV1_DICDI3.108e-1138.68Histone H2A.v1 OS=Dictyostelium discoideum GN=H2Av... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_11G06_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11G06-N11-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671554 ID=CX671554; Name=CX671554; organism=Citrus sinensis; type=EST; length=732bp
TTTTTTTTTTTTTTTTTATCGGAACAAGTACCATGATTTCATTCATTCTA
CAGTCCAAGCAAAAGAAGTTCTACACAGTGACGGACAATTAAAAACAGTA
GAATGGTCCCTAAATCCTACGAGCATGAAGCTTTCCTACAAGCCGAATAC
ATCAAAGAAGTAACATACACACAGTTAAAGATGAGAAGACTAAAAACTAA
GCCTTCTTTGGGGACTTAGTGGCCTTGGCTGGAGACTTCGGCTCTTTCGT
TGCTGCCTTCTCAGATTTTTTCGGCAGAAGAACTGGGTTGATGTTTGGCA
AGACTCCACCATGAGCAATTGTCACACCAGCAAGAAGCTTCCCAAGCTCC
TCATCGTTTCTTACAGCCAATAAAACATGCCTTGGGATGATCCTATTCTT
CTTGTTGTCCCTCGCTGCATTACCAGCCAACTCAAGAACCTCAGCTGCGA
GGTACTCAAGTACAGCAGCAAGATAGACCGGAGCGCCGGTTCCCACACGC
TGAGAGTAGCGTCCCTTCTTCAGATAGCGACCGATCCGACCGACCGGGAA
CTGCAGACCGGCTTTCACCGACCGCGAGACCGGTTTCTTCTTTGGACCAC
CCCCTTTCCTTCCTCCTGCTCCTCTCTTCACCTTTCCTCCACTCTCCATC
ACACCAGCAAAGTCAAGAAGAAGTTAGGGGGGAGAAAAAAATGGCAAAAA
CAAAATTTTCTCGAGAAACAAACGGAAACTAA
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