CX671553

Overview
NameCX671553
Unique NameCX671553
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length732
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX671553 vs. ExPASy Swiss-Prot
Match: H2A_DROME (Histone H2A OS=Drosophila melanogaster GN=His2A PE=1 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 3.934e-30
Identity = 68/105 (64.76%), Postives = 76/105 (72.38%), Query Frame = 1 
Query:  157 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 471
            SRS +AGLQFPVGRI R L+KG Y++RVG GAP                  GNAARDNKK RIIPRH+ LA+RNDEEL KLL+GVTIA GGVLPNI  VLLPKK+
Sbjct:   16 SRSNRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKT 120
[Close]
BLAST of CX671553 vs. ExPASy Swiss-Prot
Match: H2A_DROHY (Histone H2A OS=Drosophila hydei GN=His2A PE=3 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 3.934e-30
Identity = 68/105 (64.76%), Postives = 76/105 (72.38%), Query Frame = 1 
Query:  157 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 471
            SRS +AGLQFPVGRI R L+KG Y++RVG GAP                  GNAARDNKK RIIPRH+ LA+RNDEEL KLL+GVTIA GGVLPNI  VLLPKK+
Sbjct:   16 SRSNRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKT 120
[Close]
BLAST of CX671553 vs. ExPASy Swiss-Prot
Match: H2A_DROER (Histone H2A OS=Drosophila erecta GN=His2A PE=3 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 3.934e-30
Identity = 68/105 (64.76%), Postives = 76/105 (72.38%), Query Frame = 1 
Query:  157 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 471
            SRS +AGLQFPVGRI R L+KG Y++RVG GAP                  GNAARDNKK RIIPRH+ LA+RNDEEL KLL+GVTIA GGVLPNI  VLLPKK+
Sbjct:   16 SRSNRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKT 120
[Close]
BLAST of CX671553 vs. ExPASy Swiss-Prot
Match: H2A_CHITH (Histone H2A OS=Chironomus thummi thummi PE=3 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 3.934e-30
Identity = 68/105 (64.76%), Postives = 75/105 (71.43%), Query Frame = 1 
Query:  157 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 471
            SRS +AGLQFPVGRI R L+KG Y +RVG GAP                  GNAARDNKK RIIPRH+ LA+RNDEEL KLL+GVTIA GGVLPNI  VLLPKK+
Sbjct:   16 SRSSRAGLQFPVGRIHRLLRKGNYGERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKT 120
[Close]
BLAST of CX671553 vs. ExPASy Swiss-Prot
Match: H2AO_CHITH (Histone H2A, orphon OS=Chironomus thummi thummi PE=3 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 3.934e-30
Identity = 67/105 (63.81%), Postives = 76/105 (72.38%), Query Frame = 1 
Query:  157 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 471
            SRS +AGLQFPVGRI R L+KG Y++R+G GAP                  GNAARDNKK RIIPRH+ LA+RNDEEL KLL+GVTIA GGVLPNI  VLLPKK+
Sbjct:   16 SRSSRAGLQFPVGRIHRLLRKGHYAERIGAGAPVYLAAVMEYLGAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKT 120
[Close]
BLAST of CX671553 vs. ExPASy Swiss-Prot
Match: H2A2B_MOUSE (Histone H2A type 2-B OS=Mus musculus GN=Hist2h2ab PE=1 SV=3)

HSP 1 Score: 131.724 bits (330), Expect = 3.934e-30
Identity = 68/105 (64.76%), Postives = 75/105 (71.43%), Query Frame = 1 
Query:  157 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 471
            SRS +AGLQFPVGR+ R L+KG Y++RVG GAP                  GNAARDNKK RIIPRH+ LAVRNDEEL KLL GVTIA GGVLPNI  VLLPKK+
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 121
[Close]
BLAST of CX671553 vs. ExPASy Swiss-Prot
Match: H2A2B_HUMAN (Histone H2A type 2-B OS=Homo sapiens GN=HIST2H2AB PE=1 SV=3)

HSP 1 Score: 131.724 bits (330), Expect = 3.934e-30
Identity = 68/105 (64.76%), Postives = 75/105 (71.43%), Query Frame = 1 
Query:  157 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 471
            SRS +AGLQFPVGR+ R L+KG Y++RVG GAP                  GNAARDNKK RIIPRH+ LAVRNDEEL KLL GVTIA GGVLPNI  VLLPKK+
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 121
[Close]
BLAST of CX671553 vs. ExPASy Swiss-Prot
Match: H2A_STRPU (Histone H2A, embryonic OS=Strongylocentrotus purpuratus PE=1 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 5.138e-30
Identity = 67/105 (63.81%), Postives = 77/105 (73.33%), Query Frame = 1 
Query:  157 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 471
            +RS +AGLQFPVGR+ R+L+KG Y++RVG GAP                  GNAARDNKK+RIIPRH+ LAVRNDEEL KLL GVTIA GGVLPNI  VLLPKK+
Sbjct:   16 TRSSRAGLQFPVGRVHRFLRKGNYAKRVGGGAPVYMAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 120
[Close]
BLAST of CX671553 vs. ExPASy Swiss-Prot
Match: H2AX_XENLA (Histone H2A.x OS=Xenopus laevis GN=h2afx PE=1 SV=3)

HSP 1 Score: 131.339 bits (329), Expect = 5.138e-30
Identity = 68/105 (64.76%), Postives = 75/105 (71.43%), Query Frame = 1 
Query:  157 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 471
            +RS +AGLQFPVGR+ R L+KG Y+ RVG GAP                  GNAARDNKK+RIIPRH+ LAVRNDEEL KLL GVTIA GGVLPNI  VLLPKKS
Sbjct:   17 TRSSRAGLQFPVGRVHRLLRKGNYAHRVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKS 121
[Close]
BLAST of CX671553 vs. ExPASy Swiss-Prot
Match: H2AX_HUMAN (Histone H2A.x OS=Homo sapiens GN=H2AFX PE=1 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 5.138e-30
Identity = 67/105 (63.81%), Postives = 75/105 (71.43%), Query Frame = 1 
Query:  157 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 471
            SRS +AGLQFPVGR+ R L+KG Y++RVG GAP                  GNAARDNKK RIIPRH+ LA+RNDEEL KLL GVTIA GGVLPNI  VLLPKK+
Sbjct:   17 SRSSRAGLQFPVGRVHRLLRKGHYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 121
The following BLAST results are available for this feature:
BLAST of CX671553 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238
Match NameE-valueIdentityDescription
H2A_DROME3.934e-3064.76Histone H2A OS=Drosophila melanogaster GN=His2A PE... [more]
H2A_DROHY3.934e-3064.76Histone H2A OS=Drosophila hydei GN=His2A PE=3 SV=2[more]
H2A_DROER3.934e-3064.76Histone H2A OS=Drosophila erecta GN=His2A PE=3 SV=... [more]
H2A_CHITH3.934e-3064.76Histone H2A OS=Chironomus thummi thummi PE=3 SV=2[more]
H2AO_CHITH3.934e-3063.81Histone H2A, orphon OS=Chironomus thummi thummi PE... [more]
H2A2B_MOUSE3.934e-3064.76Histone H2A type 2-B OS=Mus musculus GN=Hist2h2ab ... [more]
H2A2B_HUMAN3.934e-3064.76Histone H2A type 2-B OS=Homo sapiens GN=HIST2H2AB ... [more]
H2A_STRPU5.138e-3063.81Histone H2A, embryonic OS=Strongylocentrotus purpu... [more]
H2AX_XENLA5.138e-3064.76Histone H2A.x OS=Xenopus laevis GN=h2afx PE=1 SV=3[more]
H2AX_HUMAN5.138e-3063.81Histone H2A.x OS=Homo sapiens GN=H2AFX PE=1 SV=2[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS10_11G06_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11G06-N11-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671553 ID=CX671553; Name=CX671553; organism=Citrus sinensis; type=EST; length=732bp
TTTAGTTTCCGTTTGTTTCTCGAGAAAATTTTGTTTTTGCCATTTTTTTC
TCCCCCCTAACTTCTTCTTGACTTTGCTGGTGTGATGGAGAGTGGAGGAA
AGGTGAAGAGAGGAGCAGGAGGAAGGAAAGGGGGTGGTCCAAAGAAGAAA
CCGGTCTCGCGGTCGGTGAAAGCCGGTCTGCAGTTCCCGGTCGGTCGGAT
CGGTCGCTATCTGAAGAAGGGACGCTACTCTCAGCGTGTGGGAACCGGCG
CTCCGGTCTATCTTGCTGCTGTACTTGAGTACCTCGCAGCTGAGGTTCTT
GAGTTGGCTGGTAATGCAGCGAGGGACAACAAGAAGAATAGGATCATCCC
AAGGCATGTTTTATTGGCTGTAAGAAACGATGAGGAGCTTGGGAAGCTTC
TTGCTGGTGTGACAATTGCTCATGGTGGAGTCTTGCCAAACATCAACCCA
GTTCTTCTGCCGAAAAAATCTGAGAAGGCAGCAACGAAAGAGCCGAAGTC
TCCAGCCAAGGCCACTAAGTCCCCAAAGAAGGCTTAGTTTTTAGTCTTCT
CATCTTTAACTGTGTGTATGTTACTTCTTTGATGTATTCGGCTTGTAGGA
AAGCTTCATGCTCGTAGGATTTAGGGACCATTCTACTGTTTTTAATTGTC
CGTCACTGTGTAGAACTTCTTTTGCTTGGACTGTAGAATGAATGAAATCA
TGGTACTTGTTCCGATAAAAAAAAAAAAAAAA
back to top