CX671545
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX671545 vs. ExPASy Swiss-Prot
Match: DHX40_MOUSE (Probable ATP-dependent RNA helicase DHX40 OS=Mus musculus GN=Dhx40 PE=2 SV=1) HSP 1 Score: 152.525 bits (384), Expect = 2.793e-36 Identity = 87/188 (46.28%), Postives = 115/188 (61.17%), Query Frame = 1 Query: 277 SLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRGGKLIGVTQPXXXXXXXXXXXXXEESGVELGQRVGYSIRFDDRTSTSTRIKYMTDGLLLREALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQMPGRKFP 840 + PI K+L++ VR N LI+ G TGSGKTTQLP++L+ AGF + G +IGVTQP EE LG +VGY +RFDD +S T IKYMTDG LL+ L DP LS++SVII+DEAHERT+ TD+L GLLKK+ +S + H +A M L + + G + +PGR +P Sbjct: 52 TFPIQKQRKKLIQAVRDNSFLIVTGNTGSGKTTQLPKYLYEAGFSQHG-MIGVTQPRKVAAISVAQRVAEEMKCTLGSKVGYQVRFDDCSSKETAIKYMTDGCLLKHILGDPNLSKFSVIILDEAHERTLTTDILFGLLKKLFQDKSPNRKEHLKVVVMSA--TMELAKLSAFFGNCPIFDIPGRLYP 236
BLAST of CX671545 vs. ExPASy Swiss-Prot
Match: DHX35_PONAB (Probable ATP-dependent RNA helicase DHX35 OS=Pongo abelii GN=DHX35 PE=2 SV=1) HSP 1 Score: 152.525 bits (384), Expect = 2.793e-36 Identity = 81/185 (43.78%), Postives = 115/185 (62.16%), Query Frame = 1 Query: 259 ILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRGGKLIGVTQPXXXXXXXXXXXXXEESGVELGQRVGYSIRFDDRT-STSTRIKYMTDGLLLREALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNAR----------SKSADGHSNGNNKNADSDMILD 780 I QQR+ LP+ + ++ + ++IVGETG GK+TQ+PQ+L AG+ G+++GVTQP EE G LG VGY IRFDD T +TRIK++TDG+L+RE ++DP L++YSVI++DEAHERT++TD+ +GLLKK+Q R + AD + N+N SD D Sbjct: 47 IEQQRQKLPVFKLRNHILYLIENYQTVVIVGETGCGKSTQIPQYLAEAGWTAEGRVVGVTQPRRVAAVTVAGRVAEERGAVLGHEVGYCIRFDDCTDQLATRIKFLTDGMLVREMMVDPLLTKYSVIMLDEAHERTLYTDIAIGLLKKIQKKRGDLRLIVASATLDADKFRDFFNQNETSDPARD 231
BLAST of CX671545 vs. ExPASy Swiss-Prot
Match: DHX33_HUMAN (Putative ATP-dependent RNA helicase DHX33 OS=Homo sapiens GN=DHX33 PE=1 SV=1) HSP 1 Score: 152.14 bits (383), Expect = 3.647e-36 Identity = 75/151 (49.67%), Postives = 102/151 (67.55%), Query Frame = 1 Query: 268 QRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRGGKLIGVTQPXXXXXXXXXXXXXEESGVELGQRVGYSIRFDDRTSTSTRIKYMTDGLLLREALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSK 720 QR+SLPI +L+ ++R D +++GETGSGKTTQ+PQ+L+ G R G +I VTQP +E ELG+ VGY++RFDD TS T IK++TDG+LLREA+ D L +YS +I+DEAHERT+HTDVL G++K Q R + Sbjct: 70 QRRSLPILQARGQLLAQLRNLDNAVLIGETGSGKTTQIPQYLYEGGISRQG-IIAVTQPRRVAAISLATRVSDEKRTELGKLVGYTVRFDDVTSEDTGIKFLTDGMLLREAISDSLLRKYSCVILDEAHERTIHTDVLFGVVKAAQKRRKE 219
BLAST of CX671545 vs. ExPASy Swiss-Prot
Match: PRP2_YEAST (Pre-mRNA-splicing factor ATP-dependent RNA helicase-like protein PRP2 OS=Saccharomyces cerevisiae GN=PRP2 PE=1 SV=1) HSP 1 Score: 151.754 bits (382), Expect = 4.764e-36 Identity = 79/150 (52.67%), Postives = 105/150 (70.00%), Query Frame = 1 Query: 259 ILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRGGKL-IGVTQPXXXXXXXXXXXXXEESGVELGQRVGYSIRFDDRTSTS-TRIKYMTDGLLLREALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKV 702 I + RK LP+ + L++E++KN +LII+GETGSGKTTQLPQ+L GF GKL I +TQP +E V LG+ VGY IRF+D+T+ + T +KYMTDG+LLRE L D LS+YS I++DEAHERT+ TD+L+GLLK + Sbjct: 216 IQEARKLLPVHQYKDELLQEIKKNQVLIIMGETGSGKTTQLPQYLVEDGFTDQGKLQIAITQPRRVAATSVAARVADEMNVVLGKEVGYQIRFEDKTTPNKTVLKYMTDGMLLREFLTDSKLSKYSCIMIDEAHERTLATDILIGLLKDI 365
BLAST of CX671545 vs. ExPASy Swiss-Prot
Match: DHX40_RAT (Probable ATP-dependent RNA helicase DHX40 OS=Rattus norvegicus GN=Dhx40 PE=2 SV=1) HSP 1 Score: 151.369 bits (381), Expect = 6.222e-36 Identity = 86/188 (45.74%), Postives = 115/188 (61.17%), Query Frame = 1 Query: 277 SLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRGGKLIGVTQPXXXXXXXXXXXXXEESGVELGQRVGYSIRFDDRTSTSTRIKYMTDGLLLREALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQMPGRKFP 840 + PI K+L++ VR N LI+ G TGSGKTTQLP++L+ AGF + G +IGVTQP EE LG +VGY +RFDD +S T IKYMTDG LL+ L DP L+++SVII+DEAHERT+ TD+L GLLKK+ +S + H +A M L + + G + +PGR +P Sbjct: 52 TFPIQKQRKKLIQAVRDNSFLIVTGNTGSGKTTQLPKYLYEAGFSQHG-MIGVTQPRKVAAISVAQRVAEEMKCTLGSKVGYQVRFDDCSSKETAIKYMTDGCLLKHILGDPNLNKFSVIILDEAHERTLTTDILFGLLKKLFQDKSPNRKEHLKVVVMSA--TMELAKLSAFFGNCPIFDIPGRLYP 236
BLAST of CX671545 vs. ExPASy Swiss-Prot
Match: DHX40_PONAB (Probable ATP-dependent RNA helicase DHX40 OS=Pongo abelii GN=DHX40 PE=2 SV=1) HSP 1 Score: 150.984 bits (380), Expect = 8.126e-36 Identity = 85/188 (45.21%), Postives = 115/188 (61.17%), Query Frame = 1 Query: 277 SLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRGGKLIGVTQPXXXXXXXXXXXXXEESGVELGQRVGYSIRFDDRTSTSTRIKYMTDGLLLREALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQMPGRKFP 840 + PI K++++ VR N LI+ G TGSGKTTQLP++L+ AGF + G +IGVTQP EE LG +VGY +RFDD +S T IKYMTDG LL+ L DP L+++SVII+DEAHERT+ TD+L GLLKK+ +S + H +A M L + + G + +PGR +P Sbjct: 52 TFPIQKQRKKIIQAVRDNSFLIVTGNTGSGKTTQLPKYLYEAGFSQHG-MIGVTQPRKVAAISVAQRVAEEMKCTLGSKVGYQVRFDDCSSKETAIKYMTDGCLLKHILGDPNLTKFSVIILDEAHERTLTTDILFGLLKKLFQEKSPNRKEHLKVVVMSA--TMELAKLSAFFGNCPIFDIPGRLYP 236
BLAST of CX671545 vs. ExPASy Swiss-Prot
Match: DHX40_HUMAN (Probable ATP-dependent RNA helicase DHX40 OS=Homo sapiens GN=DHX40 PE=1 SV=2) HSP 1 Score: 150.984 bits (380), Expect = 8.126e-36 Identity = 85/188 (45.21%), Postives = 115/188 (61.17%), Query Frame = 1 Query: 277 SLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRGGKLIGVTQPXXXXXXXXXXXXXEESGVELGQRVGYSIRFDDRTSTSTRIKYMTDGLLLREALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQMPGRKFP 840 + PI K++++ VR N LI+ G TGSGKTTQLP++L+ AGF + G +IGVTQP EE LG +VGY +RFDD +S T IKYMTDG LL+ L DP L+++SVII+DEAHERT+ TD+L GLLKK+ +S + H +A M L + + G + +PGR +P Sbjct: 52 TFPIQKQRKKIIQAVRDNSFLIVTGNTGSGKTTQLPKYLYEAGFSQHG-MIGVTQPRKVAAISVAQRVAEEMKCTLGSKVGYQVRFDDCSSKETAIKYMTDGCLLKHILGDPNLTKFSVIILDEAHERTLTTDILFGLLKKLFQEKSPNRKEHLKVVVMSA--TMELAKLSAFFGNCPIFDIPGRLYP 236
BLAST of CX671545 vs. ExPASy Swiss-Prot
Match: DHX15_ARATH (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase OS=Arabidopsis thaliana GN=At2g47250 PE=2 SV=1) HSP 1 Score: 148.288 bits (373), Expect = 5.267e-35 Identity = 81/163 (49.69%), Postives = 106/163 (65.03%), Query Frame = 1 Query: 241 SSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFC----RGGK-LIGVTQPXXXXXXXXXXXXXEESGVELGQRVGYSIRFDDRTSTSTRIKYMTDGLLLREALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNAR 714 S R +IL++R+ LP+ + + + N LI+VGETGSGKTTQ+PQF+ A +G K L+G TQP +E V +G+ VGYSIRF+D TS+ T +KY+TDG+LLREA+ DP L RY VII+DEAHERT+ TDVL GLLK+V R Sbjct: 52 SQRYFEILEKRRDLPVWLQKDDFLNTLNSNQTLILVGETGSGKTTQIPQFVLDAVVADNSDKGRKWLVGCTQPRRVAAMSVSRRVADEMDVSIGEEVGYSIRFEDCTSSRTMLKYLTDGMLLREAMADPLLERYKVIILDEAHERTLATDVLFGLLKEVLRNR 214
BLAST of CX671545 vs. ExPASy Swiss-Prot
Match: DHX35_CAEEL (Probable ATP-dependent RNA helicase DHX35 homolog OS=Caenorhabditis elegans GN=Y67D2.6 PE=2 SV=1) HSP 1 Score: 146.362 bits (368), Expect = 2.001e-34 Identity = 77/170 (45.29%), Postives = 106/170 (62.35%), Query Frame = 1 Query: 208 KLHSKPFFNDSSSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRGGKLIGVTQPXXXXXXXXXXXXXEESGVELGQRVGYSIRFDDRTSTSTRIKYMTDGLLLREALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARS 717 K+H+ P+ + I QQR LPI ++ + +IIVGETG GK+TQ+PQFL AG+ G+ I +TQP EE LG VGY++RFDD + T++K+MTDGLLLRE L DP LS+YS+I++DEAHER+ +TD+LLGLL+K+ R+ Sbjct: 59 KVHNNPYAS------LNIQQQRIRLPIFKNRGHILYMCERYRTIIIVGETGCGKSTQVPQFLLEAGWAADGRQIVITQPRRVAVVTLATRVAEEKDCILGHDVGYTVRFDDVSDKDTKVKFMTDGLLLREILADPLLSKYSIIMIDEAHERSCNTDILLGLLRKIIQIRN 222
BLAST of CX671545 vs. ExPASy Swiss-Prot
Match: DHX15_SCHPO (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase prp43 OS=Schizosaccharomyces pombe GN=prp43 PE=2 SV=1) HSP 1 Score: 144.05 bits (362), Expect = 9.933e-34 Identity = 80/190 (42.11%), Postives = 114/190 (60.00%), Query Frame = 1 Query: 154 LSLEMPSVAEVSNSTHNPKLHSKPFFNDS--SSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR-GGKLIGVTQPXXXXXXXXXXXXXEESGVELGQRVGYSIRFDDRTSTSTRIKYMTDGLLLREALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNAR 714 L+ +VA+ + + P FFND S KIL+ R+ LP+ + ++ +N I++ VGETGSGKTTQ+PQF+ + I TQP +E V+LG+ VGY+IRF+D + +T +KYMTDG+LLREA+ D LSRYS II+DEAHERT+ TD+L+GL+K++ R Sbjct: 35 LTRRATTVAQAAKAEEGPN----NFFNDKPFSQNYFKILETRRELPVYQQREEFLKIYHENQIIVFVGETGSGKTTQIPQFVLYDELPHLTNTQIACTQPRRVAAMSVAKRVADEMDVDLGEEVGYNIRFEDCSGPNTLLKYMTDGMLLREAMTDHMLSRYSCIILDEAHERTLATDILMGLMKRLATRR 220 The following BLAST results are available for this feature:
BLAST of CX671545 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 87
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Sequences
The
following sequences are available for this feature:
EST sequence >CX671545 ID=CX671545; Name=CX671545; organism=Citrus sinensis; type=EST; length=860bpback to top |