CX671545

Overview
NameCX671545
Unique NameCX671545
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length860
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671545 vs. ExPASy Swiss-Prot
Match: DHX40_MOUSE (Probable ATP-dependent RNA helicase DHX40 OS=Mus musculus GN=Dhx40 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.793e-36
Identity = 87/188 (46.28%), Postives = 115/188 (61.17%), Query Frame = 1
Query:  277 SLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRGGKLIGVTQPXXXXXXXXXXXXXEESGVELGQRVGYSIRFDDRTSTSTRIKYMTDGLLLREALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQMPGRKFP 840
            + PI    K+L++ VR N  LI+ G TGSGKTTQLP++L+ AGF + G +IGVTQP             EE    LG +VGY +RFDD +S  T IKYMTDG LL+  L DP LS++SVII+DEAHERT+ TD+L GLLKK+   +S +   H      +A   M L + +   G   +  +PGR +P
Sbjct:   52 TFPIQKQRKKLIQAVRDNSFLIVTGNTGSGKTTQLPKYLYEAGFSQHG-MIGVTQPRKVAAISVAQRVAEEMKCTLGSKVGYQVRFDDCSSKETAIKYMTDGCLLKHILGDPNLSKFSVIILDEAHERTLTTDILFGLLKKLFQDKSPNRKEHLKVVVMSA--TMELAKLSAFFGNCPIFDIPGRLYP 236          
BLAST of CX671545 vs. ExPASy Swiss-Prot
Match: DHX35_PONAB (Probable ATP-dependent RNA helicase DHX35 OS=Pongo abelii GN=DHX35 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.793e-36
Identity = 81/185 (43.78%), Postives = 115/185 (62.16%), Query Frame = 1
Query:  259 ILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRGGKLIGVTQPXXXXXXXXXXXXXEESGVELGQRVGYSIRFDDRT-STSTRIKYMTDGLLLREALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNAR----------SKSADGHSNGNNKNADSDMILD 780
            I QQR+ LP+  +   ++  +     ++IVGETG GK+TQ+PQ+L  AG+   G+++GVTQP             EE G  LG  VGY IRFDD T   +TRIK++TDG+L+RE ++DP L++YSVI++DEAHERT++TD+ +GLLKK+Q  R          +  AD   +  N+N  SD   D
Sbjct:   47 IEQQRQKLPVFKLRNHILYLIENYQTVVIVGETGCGKSTQIPQYLAEAGWTAEGRVVGVTQPRRVAAVTVAGRVAEERGAVLGHEVGYCIRFDDCTDQLATRIKFLTDGMLVREMMVDPLLTKYSVIMLDEAHERTLYTDIAIGLLKKIQKKRGDLRLIVASATLDADKFRDFFNQNETSDPARD 231          
BLAST of CX671545 vs. ExPASy Swiss-Prot
Match: DHX33_HUMAN (Putative ATP-dependent RNA helicase DHX33 OS=Homo sapiens GN=DHX33 PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.647e-36
Identity = 75/151 (49.67%), Postives = 102/151 (67.55%), Query Frame = 1
Query:  268 QRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRGGKLIGVTQPXXXXXXXXXXXXXEESGVELGQRVGYSIRFDDRTSTSTRIKYMTDGLLLREALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSK 720
            QR+SLPI     +L+ ++R  D  +++GETGSGKTTQ+PQ+L+  G  R G +I VTQP             +E   ELG+ VGY++RFDD TS  T IK++TDG+LLREA+ D  L +YS +I+DEAHERT+HTDVL G++K  Q  R +
Sbjct:   70 QRRSLPILQARGQLLAQLRNLDNAVLIGETGSGKTTQIPQYLYEGGISRQG-IIAVTQPRRVAAISLATRVSDEKRTELGKLVGYTVRFDDVTSEDTGIKFLTDGMLLREAISDSLLRKYSCVILDEAHERTIHTDVLFGVVKAAQKRRKE 219          
BLAST of CX671545 vs. ExPASy Swiss-Prot
Match: PRP2_YEAST (Pre-mRNA-splicing factor ATP-dependent RNA helicase-like protein PRP2 OS=Saccharomyces cerevisiae GN=PRP2 PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 4.764e-36
Identity = 79/150 (52.67%), Postives = 105/150 (70.00%), Query Frame = 1
Query:  259 ILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRGGKL-IGVTQPXXXXXXXXXXXXXEESGVELGQRVGYSIRFDDRTSTS-TRIKYMTDGLLLREALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKV 702
            I + RK LP+   +  L++E++KN +LII+GETGSGKTTQLPQ+L   GF   GKL I +TQP             +E  V LG+ VGY IRF+D+T+ + T +KYMTDG+LLRE L D  LS+YS I++DEAHERT+ TD+L+GLLK +
Sbjct:  216 IQEARKLLPVHQYKDELLQEIKKNQVLIIMGETGSGKTTQLPQYLVEDGFTDQGKLQIAITQPRRVAATSVAARVADEMNVVLGKEVGYQIRFEDKTTPNKTVLKYMTDGMLLREFLTDSKLSKYSCIMIDEAHERTLATDILIGLLKDI 365          
BLAST of CX671545 vs. ExPASy Swiss-Prot
Match: DHX40_RAT (Probable ATP-dependent RNA helicase DHX40 OS=Rattus norvegicus GN=Dhx40 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 6.222e-36
Identity = 86/188 (45.74%), Postives = 115/188 (61.17%), Query Frame = 1
Query:  277 SLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRGGKLIGVTQPXXXXXXXXXXXXXEESGVELGQRVGYSIRFDDRTSTSTRIKYMTDGLLLREALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQMPGRKFP 840
            + PI    K+L++ VR N  LI+ G TGSGKTTQLP++L+ AGF + G +IGVTQP             EE    LG +VGY +RFDD +S  T IKYMTDG LL+  L DP L+++SVII+DEAHERT+ TD+L GLLKK+   +S +   H      +A   M L + +   G   +  +PGR +P
Sbjct:   52 TFPIQKQRKKLIQAVRDNSFLIVTGNTGSGKTTQLPKYLYEAGFSQHG-MIGVTQPRKVAAISVAQRVAEEMKCTLGSKVGYQVRFDDCSSKETAIKYMTDGCLLKHILGDPNLNKFSVIILDEAHERTLTTDILFGLLKKLFQDKSPNRKEHLKVVVMSA--TMELAKLSAFFGNCPIFDIPGRLYP 236          
BLAST of CX671545 vs. ExPASy Swiss-Prot
Match: DHX40_PONAB (Probable ATP-dependent RNA helicase DHX40 OS=Pongo abelii GN=DHX40 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 8.126e-36
Identity = 85/188 (45.21%), Postives = 115/188 (61.17%), Query Frame = 1
Query:  277 SLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRGGKLIGVTQPXXXXXXXXXXXXXEESGVELGQRVGYSIRFDDRTSTSTRIKYMTDGLLLREALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQMPGRKFP 840
            + PI    K++++ VR N  LI+ G TGSGKTTQLP++L+ AGF + G +IGVTQP             EE    LG +VGY +RFDD +S  T IKYMTDG LL+  L DP L+++SVII+DEAHERT+ TD+L GLLKK+   +S +   H      +A   M L + +   G   +  +PGR +P
Sbjct:   52 TFPIQKQRKKIIQAVRDNSFLIVTGNTGSGKTTQLPKYLYEAGFSQHG-MIGVTQPRKVAAISVAQRVAEEMKCTLGSKVGYQVRFDDCSSKETAIKYMTDGCLLKHILGDPNLTKFSVIILDEAHERTLTTDILFGLLKKLFQEKSPNRKEHLKVVVMSA--TMELAKLSAFFGNCPIFDIPGRLYP 236          
BLAST of CX671545 vs. ExPASy Swiss-Prot
Match: DHX40_HUMAN (Probable ATP-dependent RNA helicase DHX40 OS=Homo sapiens GN=DHX40 PE=1 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 8.126e-36
Identity = 85/188 (45.21%), Postives = 115/188 (61.17%), Query Frame = 1
Query:  277 SLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRGGKLIGVTQPXXXXXXXXXXXXXEESGVELGQRVGYSIRFDDRTSTSTRIKYMTDGLLLREALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQMPGRKFP 840
            + PI    K++++ VR N  LI+ G TGSGKTTQLP++L+ AGF + G +IGVTQP             EE    LG +VGY +RFDD +S  T IKYMTDG LL+  L DP L+++SVII+DEAHERT+ TD+L GLLKK+   +S +   H      +A   M L + +   G   +  +PGR +P
Sbjct:   52 TFPIQKQRKKIIQAVRDNSFLIVTGNTGSGKTTQLPKYLYEAGFSQHG-MIGVTQPRKVAAISVAQRVAEEMKCTLGSKVGYQVRFDDCSSKETAIKYMTDGCLLKHILGDPNLTKFSVIILDEAHERTLTTDILFGLLKKLFQEKSPNRKEHLKVVVMSA--TMELAKLSAFFGNCPIFDIPGRLYP 236          
BLAST of CX671545 vs. ExPASy Swiss-Prot
Match: DHX15_ARATH (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase OS=Arabidopsis thaliana GN=At2g47250 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 5.267e-35
Identity = 81/163 (49.69%), Postives = 106/163 (65.03%), Query Frame = 1
Query:  241 SSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFC----RGGK-LIGVTQPXXXXXXXXXXXXXEESGVELGQRVGYSIRFDDRTSTSTRIKYMTDGLLLREALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNAR 714
            S R  +IL++R+ LP+   +   +  +  N  LI+VGETGSGKTTQ+PQF+  A       +G K L+G TQP             +E  V +G+ VGYSIRF+D TS+ T +KY+TDG+LLREA+ DP L RY VII+DEAHERT+ TDVL GLLK+V   R
Sbjct:   52 SQRYFEILEKRRDLPVWLQKDDFLNTLNSNQTLILVGETGSGKTTQIPQFVLDAVVADNSDKGRKWLVGCTQPRRVAAMSVSRRVADEMDVSIGEEVGYSIRFEDCTSSRTMLKYLTDGMLLREAMADPLLERYKVIILDEAHERTLATDVLFGLLKEVLRNR 214          
BLAST of CX671545 vs. ExPASy Swiss-Prot
Match: DHX35_CAEEL (Probable ATP-dependent RNA helicase DHX35 homolog OS=Caenorhabditis elegans GN=Y67D2.6 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 2.001e-34
Identity = 77/170 (45.29%), Postives = 106/170 (62.35%), Query Frame = 1
Query:  208 KLHSKPFFNDSSSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRGGKLIGVTQPXXXXXXXXXXXXXEESGVELGQRVGYSIRFDDRTSTSTRIKYMTDGLLLREALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARS 717
            K+H+ P+ +        I QQR  LPI      ++    +   +IIVGETG GK+TQ+PQFL  AG+   G+ I +TQP             EE    LG  VGY++RFDD +   T++K+MTDGLLLRE L DP LS+YS+I++DEAHER+ +TD+LLGLL+K+   R+
Sbjct:   59 KVHNNPYAS------LNIQQQRIRLPIFKNRGHILYMCERYRTIIIVGETGCGKSTQVPQFLLEAGWAADGRQIVITQPRRVAVVTLATRVAEEKDCILGHDVGYTVRFDDVSDKDTKVKFMTDGLLLREILADPLLSKYSIIMIDEAHERSCNTDILLGLLRKIIQIRN 222          
BLAST of CX671545 vs. ExPASy Swiss-Prot
Match: DHX15_SCHPO (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase prp43 OS=Schizosaccharomyces pombe GN=prp43 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 9.933e-34
Identity = 80/190 (42.11%), Postives = 114/190 (60.00%), Query Frame = 1
Query:  154 LSLEMPSVAEVSNSTHNPKLHSKPFFNDS--SSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCR-GGKLIGVTQPXXXXXXXXXXXXXEESGVELGQRVGYSIRFDDRTSTSTRIKYMTDGLLLREALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNAR 714
            L+    +VA+ + +   P      FFND   S    KIL+ R+ LP+    +  ++   +N I++ VGETGSGKTTQ+PQF+ +          I  TQP             +E  V+LG+ VGY+IRF+D +  +T +KYMTDG+LLREA+ D  LSRYS II+DEAHERT+ TD+L+GL+K++   R
Sbjct:   35 LTRRATTVAQAAKAEEGPN----NFFNDKPFSQNYFKILETRRELPVYQQREEFLKIYHENQIIVFVGETGSGKTTQIPQFVLYDELPHLTNTQIACTQPRRVAAMSVAKRVADEMDVDLGEEVGYNIRFEDCSGPNTLLKYMTDGMLLREAMTDHMLSRYSCIILDEAHERTLATDILMGLMKRLATRR 220          
The following BLAST results are available for this feature:
BLAST of CX671545 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
DHX40_MOUSE2.793e-3646.28Probable ATP-dependent RNA helicase DHX40 OS=Mus m... [more]
DHX35_PONAB2.793e-3643.78Probable ATP-dependent RNA helicase DHX35 OS=Pongo... [more]
DHX33_HUMAN3.647e-3649.67Putative ATP-dependent RNA helicase DHX33 OS=Homo ... [more]
PRP2_YEAST4.764e-3652.67Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]
DHX40_RAT6.222e-3645.74Probable ATP-dependent RNA helicase DHX40 OS=Rattu... [more]
DHX40_PONAB8.126e-3645.21Probable ATP-dependent RNA helicase DHX40 OS=Pongo... [more]
DHX40_HUMAN8.126e-3645.21Probable ATP-dependent RNA helicase DHX40 OS=Homo ... [more]
DHX15_ARATH5.267e-3549.69Probable pre-mRNA-splicing factor ATP-dependent RN... [more]
DHX35_CAEEL2.001e-3445.29Probable ATP-dependent RNA helicase DHX35 homolog ... [more]
DHX15_SCHPO9.933e-3442.11Probable pre-mRNA-splicing factor ATP-dependent RN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_11F12_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11F12-L23-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671545 ID=CX671545; Name=CX671545; organism=Citrus sinensis; type=EST; length=860bp
GTAATTCTCGTTTGATTTCGTCTGTTGATTACCGGCATATGATGTTTATT
TTAAGAAGAAGAGAAGCAAAGAGAGCAACATCAAGTTCTTTCTCAAACAA
AAACTGAAGTGATAATCATAGTTGTTTGTTTTGGGAACTCTTCTGTACAT
CAATTAAGTCTCGAGATGCCGTCAGTGGCTGAAGTGAGTAACTCCACTCA
CAACCCCAAGCTTCACTCCAAACCCTTCTTCAATGACTCCTCTTCCAGGA
GGCAAAAAATTCTTCAACAGAGAAAATCCCTGCCAATTGCTTCAGTTGAG
AAACGACTTGTGGAGGAGGTCCGTAAAAATGATATTTTGATTATAGTTGG
TGAAACCGGAAGTGGAAAAACAACTCAATTGCCTCAGTTTCTGTTTCATG
CGGGATTTTGTCGCGGTGGTAAACTTATTGGAGTAACACAACCTAGGCGG
GTTGCGGCTGTCACTGTCGCTAAGCGGGTAGCAGAGGAATCTGGTGTTGA
GTTGGGCCAACGAGTTGGCTATTCCATTAGATTTGATGATAGGACTTCCA
CTTCAACAAGGATCAAGTACATGACTGATGGGCTGCTATTAAGGGAAGCA
TTACTTGATCCATACCTCTCTCGGTATTCTGTCATCATTGTTGATGAAGC
TCATGAGAGAACTGTCCATACTGATGTATTGCTGGGCTTGCTGAAAAAGG
TACAAAATGCAAGGTCAAAATCTGCAGATGGCCACTCTAATGGCAATAAC
AAGAATGCAGACAGTGACATGATACTGGACAGAGAAAATGACACAAATGG
CATCAATACTTTGAAGCAAATGCCAGGACGAAAATTTCCTCCTTTAAAGT
AATCATCATG
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