CX671545
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX671545 vs. ExPASy Swiss-Prot
Match: DHX9_BOVIN (ATP-dependent RNA helicase A OS=Bos taurus GN=DHX9 PE=2 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 1.303e-17 Identity = 60/161 (37.27%), Postives = 85/161 (52.80%), Query Frame = 1 Query: 253 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF-------HAGFCRGGKLIGVTQPXXXXXXXXXXXXXEESGVELGQRVGYSIRFDD-RTSTSTRIKYMTDGLLLREALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNA 711 Q +LQ+R+ LP+ E ++E + +N ++II G TG GKTTQ+PQF+ A C I VTQP E G E G+ GYS+RF+ I + T G+LLR+ L+ + S +IVDE HER ++TD LL +L+ V A Sbjct: 376 QAVLQERELLPVKKFESEILEAISQNPVVIIRGATGCGKTTQVPQFILDDCIQNDRAAECN----IVVTQPRRISAVSVAERVAYERGEEPGKSCGYSVRFESILPRPHASIMFCTVGVLLRK--LEAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQA 530
BLAST of CX671545 vs. ExPASy Swiss-Prot
Match: YUM14_USTMA (Putative DEAH-box ATP-dependent helicase UM11114 OS=Ustilago maydis GN=UM11114 PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.702e-17 Identity = 66/185 (35.68%), Postives = 95/185 (51.35%), Query Frame = 1 Query: 208 KLHSKPFFNDSSSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF--CRGGKL-IGVTQPXXXXXXXXXXXXXEESGVEL---------GQRVGYSIRFDDRTSTSTRIKYMTDGLLLRE--ALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSK 720 +LH+ P ++ K+ + R+SLP AS + ++ +R N ++II GETG GKTTQ+PQF+ RG + I VTQP E G +L G VGY+IR + R S R+ + T G+LLR A D L S ++VDE HER V +D LL L+++ S+ Sbjct: 719 QLHTSPSYS-------KMDETRRSLPAASAAREILGLIRSNRVVIIAGETGCGKTTQVPQFILDEAIEAGRGSECNIVVTQPRRVSAIGVASRVAVERGEKLDGKKKAVAPGSLVGYAIRGERRASRECRLLFTTTGVLLRRLGAGGDTDLKGISHVVVDEVHERNVDSDFLLLELRELLRRNSR 896
BLAST of CX671545 vs. ExPASy Swiss-Prot
Match: DQX1_BOVIN (ATP-dependent RNA helicase DQX1 OS=Bos taurus GN=DQX1 PE=2 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.702e-17 Identity = 57/158 (36.08%), Postives = 87/158 (55.06%), Query Frame = 1 Query: 241 SSRRQKILQQRKSLPIASVEKRLVEEVRKND--ILIIVGETGSGKTTQLPQ----FLFHAGFCRGGKLIGVTQPXXXXXXXXXXXXXEESGVELGQRVGYSIRFDDRTSTSTRIKYMTDGLLLREALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLK 696 SSR K+L+QR+SLP+ + +E + + ++++ GE G GK+TQ+PQ F+ GF +G + VTQP +E + LG VGYSI +D T T +++ D LLL+E V+I+DEA ER+V +D+L GLL+ Sbjct: 32 SSRYYKLLEQRRSLPVWAARFIFLEHLESSPSGVVLVSGEPGCGKSTQIPQWCAEFVLARGFQKGW--VTVTQPYPLAALSLALRVADEMDLTLGHEVGYSIPQEDCTGPDTLLRFCWDRLLLQEVASTRGTGARGVLILDEAQERSVASDLLQGLLR 187
BLAST of CX671545 vs. ExPASy Swiss-Prot
Match: DHX57_MOUSE (Putative ATP-dependent RNA helicase DHX57 OS=Mus musculus GN=Dhx57 PE=2 SV=2) HSP 1 Score: 90.1225 bits (222), Expect = 1.702e-17 Identity = 58/175 (33.14%), Postives = 89/175 (50.86%), Query Frame = 1 Query: 202 NPKLHSKPFFNDSSSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRGGKLIG---VTQPXXXXXXXXXXXXXEESGVELGQRVGYSIRFDDRTSTSTRIKYMTDGLLLREALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARS 717 N K+ + +S + ILQ+R+ LP + +++ + K+ +++I G TG GKTTQ+PQF+ + + TQP +E +G VGY IR + S++TR+ Y T G+LLR D L + IIVDE HERT +D LL +LK + R+ Sbjct: 519 NSKICRQFQMKQASRQFHAILQERQLLPAWEERETILKLLSKHQVVVISGMTGCGKTTQIPQFILDNSLNGPPERVANIICTQPRRISAISVAERVAKERAERVGLTVGYQIRLESVKSSATRLLYCTTGVLLRRLEGDATLQGVTHIIVDEVHERTEESDFLLLVLKDIVMQRA 693
BLAST of CX671545 vs. ExPASy Swiss-Prot
Match: DHX9_MOUSE (ATP-dependent RNA helicase A OS=Mus musculus GN=Dhx9 PE=1 SV=2) HSP 1 Score: 88.9669 bits (219), Expect = 3.792e-17 Identity = 63/197 (31.98%), Postives = 96/197 (48.73%), Query Frame = 1 Query: 136 NSSVHQLSLEMPSVAEVSNSTHNPKLHSKPFFNDSSSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF-------HAGFCRGGKLIGVTQPXXXXXXXXXXXXXEESGVELGQRVGYSIRFDD-RTSTSTRIKYMTDGLLLREALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKV 702 +S++ + L S ++S N + + Q +LQ+R+ LP+ E ++E + N ++II G TG GKTTQ+PQ++ A C I VTQP E G E G+ GYS+RF+ I + T G+LLR+ L+ + S +IVDE HER ++TD LL +L+ V Sbjct: 346 SSNIDEGPLAYASTEQISMDLKNELTYQM----EQDHNLQSVLQERELLPVKKFEAEILEAISSNSVVIIRGATGCGKTTQVPQYILDDFIQNDRAAECN----IVVTQPRRISAVAVAERVAYERGEEPGKSCGYSVRFESILPRPHASIMFCTVGVLLRK--LEAGIRGISHVIVDEIHERDINTDFLLVVLRDV 532
BLAST of CX671545 vs. ExPASy Swiss-Prot
Match: UCP12_SCHPO (Putative ATP-dependent RNA helicase ucp12 OS=Schizosaccharomyces pombe GN=ucp12 PE=2 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 8.448e-17 Identity = 59/187 (31.55%), Postives = 95/187 (50.80%), Query Frame = 1 Query: 190 NSTHNPKLH------SKPFFNDSSSR-----RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRGGK---LIGVTQPXXXXXXXXXXXXXEESGVELGQRVGYSIRFDDRTSTSTRIKYMTDGLLLREALLD--PYLSRYSVIIVDEAHERTVHTDVLLGLLKKV 702 N++ PKL S+ N+ S R Q +++R+ LP +++++ ++ + +++I GETGSGK+TQ+ QF+ G K + TQP E +G+ VGYS+ + S T +++ T GLLLR +LS S ++VDE HER++ D+LL LLK V Sbjct: 536 NNSFKPKLFRRSRELSEKLCNNWSERVKSPSYQLKVREREKLPAWESRRKIMDAIQHSQVVVISGETGSGKSTQVVQFILDHYLSSGEKDLQTVVCTQPRRISAISLAERVAFERDTTVGKEVGYSVHGEKSISKETLLEFCTTGLLLRRIQQHGLGFLSTLSCVVVDEVHERSIENDILLTLLKLV 722
BLAST of CX671545 vs. ExPASy Swiss-Prot
Match: DQX1_MOUSE (ATP-dependent RNA helicase DQX1 OS=Mus musculus GN=Dqx1 PE=2 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.441e-16 Identity = 52/156 (33.33%), Postives = 87/156 (55.77%), Query Frame = 1 Query: 241 SSRRQKILQQRKSLPIASVEKRLVEEVRKND--ILIIVGETGSGKTTQLPQFLFHAGFCRGGKL--IGVTQPXXXXXXXXXXXXXEESGVELGQRVGYSIRFDDRTSTSTRIKYMTDGLLLREALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLK 696 SS ++L+QR++LPI + +E + + ++++ G+ GSGK+TQ+PQ+ RG + + VTQP +E + LG +GYSI +D T +T +++ D L L+E +SV+I+DEA ER+V +D+L GLL+ Sbjct: 29 SSCYYELLEQRRALPIWAARFLFLEHLESSPTGVVLVSGDPGSGKSTQIPQWCAEFALARGFQTGQVTVTQPYPLAAMSLASRVADEMDLTLGHEIGYSIPQEDCTGPNTMLRFCWDRLFLQEVASTRGPGAWSVLILDEAQERSVASDLLQGLLR 184
BLAST of CX671545 vs. ExPASy Swiss-Prot
Match: DHX30_CHICK (Putative ATP-dependent RNA helicase DHX30 OS=Gallus gallus GN=DHX30 PE=2 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 5.476e-16 Identity = 50/157 (31.85%), Postives = 81/157 (51.59%), Query Frame = 1 Query: 247 RRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRGGKL---IGVTQPXXXXXXXXXXXXXEESGVELGQRVGYSIRFDDRT-STSTRIKYMTDGLLLREALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQ 705 RR Q+ LP+ + ++ + +N +++I G+TG GKTT++PQ L G + +TQP +E G + + VGY +R + + + + + T G+LLR+ +P L S ++VDE HER V+TD LL LLK +Q Sbjct: 467 RRGSSWQESHPLPVDPHKDTILSAIEQNPVVVIAGDTGCGKTTRIPQLLLEHYILEGRGARCNVVITQPRRISAISVAQRVAQELGPNMRKNVGYQVRLESKPPARGGALLFCTVGILLRKLQGNPSLEGVSHVVVDEVHERDVNTDFLLILLKGIQ 623
BLAST of CX671545 vs. ExPASy Swiss-Prot
Match: C3H31_ARATH (Zinc finger CCCH domain-containing protein 31 OS=Arabidopsis thaliana GN=At2g47680 PE=2 SV=2) HSP 1 Score: 85.1149 bits (209), Expect = 5.476e-16 Identity = 55/164 (33.54%), Postives = 90/164 (54.88%), Query Frame = 1 Query: 217 SKPFFNDSSSRRQKILQQR-KSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRGGKLIGVTQPXXXXXXXXXXXXXEESGVELGQRVGYSIRFDDRTSTSTRIKYMTDGLLLREALLDPYLS--RYSVIIVDEAHERTVHTDVLLGLLKK 699 S P + SSS + SLPI ++++R+++++ +N + +IVGE G GK++Q+PQFL A I TQP + +LG +GY I + ++I + T G+LL E +LD L+ +Y VII+DE HER+V +D++L +K+ Sbjct: 4 SSPTSSSSSSESLPLPSSNFASLPIMAMKRRIIDKILENRVTLIVGEPGCGKSSQVPQFLLEANMAP----ILCTQPRRFAVVAVAKMVAKSRNSDLGGEIGYHIGHSKILTEGSKILFKTAGVLLDE-MLDKGLNALKYKVIILDEVHERSVESDLVLVCVKQ 162
BLAST of CX671545 vs. ExPASy Swiss-Prot
Match: MLE_DROME (Dosage compensation regulator OS=Drosophila melanogaster GN=mle PE=1 SV=2) HSP 1 Score: 84.7297 bits (208), Expect = 7.152e-16 Identity = 67/207 (32.37%), Postives = 103/207 (49.76%), Query Frame = 1 Query: 232 NDSSSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRGG---KLIGVTQPXXXXXXXXXXXXXEESGVELGQRVGYSIRFDD-RTSTSTRIKYMTDGLLLREALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQMPGRKFP 840 ND+ R+ L+ R+ LPIA++ ++ + N ++II G TG GKTTQ+ Q++ C G I VTQP E +LG VGYS+RF+ I + T G+LLR+ L+ L S IIVDE HER V++D LL +L+ + D + + + + + + + GI + ++PGR FP Sbjct: 370 NDNEYRQ--FLEFREKLPIAAMRSEILTAINDNPVVIIRGNTGCGKTTQIAQYILDDYICSGQGGYANIYVTQPRRISAISVAERVARERCEQLGDTVGYSVRFESVFPRPYGAILFCTVGVLLRK--LEAGLRGVSHIIVDEIHERDVNSDFLLVILRDM-------VDTYPDLHVILMSATIDTTKFSKYFGICPVLEVPGRAFP 565 The following BLAST results are available for this feature:
BLAST of CX671545 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 87
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Sequences
The
following sequences are available for this feature:
EST sequence >CX671545 ID=CX671545; Name=CX671545; organism=Citrus sinensis; type=EST; length=860bpback to top |