CX671545

Overview
NameCX671545
Unique NameCX671545
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length860
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671545 vs. ExPASy Swiss-Prot
Match: DHX9_BOVIN (ATP-dependent RNA helicase A OS=Bos taurus GN=DHX9 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.303e-17
Identity = 60/161 (37.27%), Postives = 85/161 (52.80%), Query Frame = 1
Query:  253 QKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF-------HAGFCRGGKLIGVTQPXXXXXXXXXXXXXEESGVELGQRVGYSIRFDD-RTSTSTRIKYMTDGLLLREALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNA 711
            Q +LQ+R+ LP+   E  ++E + +N ++II G TG GKTTQ+PQF+         A  C     I VTQP              E G E G+  GYS+RF+         I + T G+LLR+  L+  +   S +IVDE HER ++TD LL +L+ V  A
Sbjct:  376 QAVLQERELLPVKKFESEILEAISQNPVVIIRGATGCGKTTQVPQFILDDCIQNDRAAECN----IVVTQPRRISAVSVAERVAYERGEEPGKSCGYSVRFESILPRPHASIMFCTVGVLLRK--LEAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQA 530          
BLAST of CX671545 vs. ExPASy Swiss-Prot
Match: YUM14_USTMA (Putative DEAH-box ATP-dependent helicase UM11114 OS=Ustilago maydis GN=UM11114 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.702e-17
Identity = 66/185 (35.68%), Postives = 95/185 (51.35%), Query Frame = 1
Query:  208 KLHSKPFFNDSSSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGF--CRGGKL-IGVTQPXXXXXXXXXXXXXEESGVEL---------GQRVGYSIRFDDRTSTSTRIKYMTDGLLLRE--ALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSK 720
            +LH+ P ++       K+ + R+SLP AS  + ++  +R N ++II GETG GKTTQ+PQF+        RG +  I VTQP              E G +L         G  VGY+IR + R S   R+ + T G+LLR   A  D  L   S ++VDE HER V +D LL  L+++    S+
Sbjct:  719 QLHTSPSYS-------KMDETRRSLPAASAAREILGLIRSNRVVIIAGETGCGKTTQVPQFILDEAIEAGRGSECNIVVTQPRRVSAIGVASRVAVERGEKLDGKKKAVAPGSLVGYAIRGERRASRECRLLFTTTGVLLRRLGAGGDTDLKGISHVVVDEVHERNVDSDFLLLELRELLRRNSR 896          
BLAST of CX671545 vs. ExPASy Swiss-Prot
Match: DQX1_BOVIN (ATP-dependent RNA helicase DQX1 OS=Bos taurus GN=DQX1 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.702e-17
Identity = 57/158 (36.08%), Postives = 87/158 (55.06%), Query Frame = 1
Query:  241 SSRRQKILQQRKSLPIASVEKRLVEEVRKND--ILIIVGETGSGKTTQLPQ----FLFHAGFCRGGKLIGVTQPXXXXXXXXXXXXXEESGVELGQRVGYSIRFDDRTSTSTRIKYMTDGLLLREALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLK 696
            SSR  K+L+QR+SLP+ +     +E +  +   ++++ GE G GK+TQ+PQ    F+   GF +G   + VTQP             +E  + LG  VGYSI  +D T   T +++  D LLL+E           V+I+DEA ER+V +D+L GLL+
Sbjct:   32 SSRYYKLLEQRRSLPVWAARFIFLEHLESSPSGVVLVSGEPGCGKSTQIPQWCAEFVLARGFQKGW--VTVTQPYPLAALSLALRVADEMDLTLGHEVGYSIPQEDCTGPDTLLRFCWDRLLLQEVASTRGTGARGVLILDEAQERSVASDLLQGLLR 187          
BLAST of CX671545 vs. ExPASy Swiss-Prot
Match: DHX57_MOUSE (Putative ATP-dependent RNA helicase DHX57 OS=Mus musculus GN=Dhx57 PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.702e-17
Identity = 58/175 (33.14%), Postives = 89/175 (50.86%), Query Frame = 1
Query:  202 NPKLHSKPFFNDSSSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRGGKLIG---VTQPXXXXXXXXXXXXXEESGVELGQRVGYSIRFDDRTSTSTRIKYMTDGLLLREALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARS 717
            N K+  +     +S +   ILQ+R+ LP     + +++ + K+ +++I G TG GKTTQ+PQF+         + +     TQP             +E    +G  VGY IR +   S++TR+ Y T G+LLR    D  L   + IIVDE HERT  +D LL +LK +   R+
Sbjct:  519 NSKICRQFQMKQASRQFHAILQERQLLPAWEERETILKLLSKHQVVVISGMTGCGKTTQIPQFILDNSLNGPPERVANIICTQPRRISAISVAERVAKERAERVGLTVGYQIRLESVKSSATRLLYCTTGVLLRRLEGDATLQGVTHIIVDEVHERTEESDFLLLVLKDIVMQRA 693          
BLAST of CX671545 vs. ExPASy Swiss-Prot
Match: DHX9_MOUSE (ATP-dependent RNA helicase A OS=Mus musculus GN=Dhx9 PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 3.792e-17
Identity = 63/197 (31.98%), Postives = 96/197 (48.73%), Query Frame = 1
Query:  136 NSSVHQLSLEMPSVAEVSNSTHNPKLHSKPFFNDSSSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLF-------HAGFCRGGKLIGVTQPXXXXXXXXXXXXXEESGVELGQRVGYSIRFDD-RTSTSTRIKYMTDGLLLREALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKV 702
            +S++ +  L   S  ++S    N   +      +     Q +LQ+R+ LP+   E  ++E +  N ++II G TG GKTTQ+PQ++         A  C     I VTQP              E G E G+  GYS+RF+         I + T G+LLR+  L+  +   S +IVDE HER ++TD LL +L+ V
Sbjct:  346 SSNIDEGPLAYASTEQISMDLKNELTYQM----EQDHNLQSVLQERELLPVKKFEAEILEAISSNSVVIIRGATGCGKTTQVPQYILDDFIQNDRAAECN----IVVTQPRRISAVAVAERVAYERGEEPGKSCGYSVRFESILPRPHASIMFCTVGVLLRK--LEAGIRGISHVIVDEIHERDINTDFLLVVLRDV 532          
BLAST of CX671545 vs. ExPASy Swiss-Prot
Match: UCP12_SCHPO (Putative ATP-dependent RNA helicase ucp12 OS=Schizosaccharomyces pombe GN=ucp12 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.448e-17
Identity = 59/187 (31.55%), Postives = 95/187 (50.80%), Query Frame = 1
Query:  190 NSTHNPKLH------SKPFFNDSSSR-----RQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRGGK---LIGVTQPXXXXXXXXXXXXXEESGVELGQRVGYSIRFDDRTSTSTRIKYMTDGLLLREALLD--PYLSRYSVIIVDEAHERTVHTDVLLGLLKKV 702
            N++  PKL       S+   N+ S R      Q  +++R+ LP     +++++ ++ + +++I GETGSGK+TQ+ QF+       G K    +  TQP              E    +G+ VGYS+  +   S  T +++ T GLLLR        +LS  S ++VDE HER++  D+LL LLK V
Sbjct:  536 NNSFKPKLFRRSRELSEKLCNNWSERVKSPSYQLKVREREKLPAWESRRKIMDAIQHSQVVVISGETGSGKSTQVVQFILDHYLSSGEKDLQTVVCTQPRRISAISLAERVAFERDTTVGKEVGYSVHGEKSISKETLLEFCTTGLLLRRIQQHGLGFLSTLSCVVVDEVHERSIENDILLTLLKLV 722          
BLAST of CX671545 vs. ExPASy Swiss-Prot
Match: DQX1_MOUSE (ATP-dependent RNA helicase DQX1 OS=Mus musculus GN=Dqx1 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.441e-16
Identity = 52/156 (33.33%), Postives = 87/156 (55.77%), Query Frame = 1
Query:  241 SSRRQKILQQRKSLPIASVEKRLVEEVRKND--ILIIVGETGSGKTTQLPQFLFHAGFCRGGKL--IGVTQPXXXXXXXXXXXXXEESGVELGQRVGYSIRFDDRTSTSTRIKYMTDGLLLREALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLK 696
            SS   ++L+QR++LPI +     +E +  +   ++++ G+ GSGK+TQ+PQ+       RG +   + VTQP             +E  + LG  +GYSI  +D T  +T +++  D L L+E         +SV+I+DEA ER+V +D+L GLL+
Sbjct:   29 SSCYYELLEQRRALPIWAARFLFLEHLESSPTGVVLVSGDPGSGKSTQIPQWCAEFALARGFQTGQVTVTQPYPLAAMSLASRVADEMDLTLGHEIGYSIPQEDCTGPNTMLRFCWDRLFLQEVASTRGPGAWSVLILDEAQERSVASDLLQGLLR 184          
BLAST of CX671545 vs. ExPASy Swiss-Prot
Match: DHX30_CHICK (Putative ATP-dependent RNA helicase DHX30 OS=Gallus gallus GN=DHX30 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.476e-16
Identity = 50/157 (31.85%), Postives = 81/157 (51.59%), Query Frame = 1
Query:  247 RRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRGGKL---IGVTQPXXXXXXXXXXXXXEESGVELGQRVGYSIRFDDRT-STSTRIKYMTDGLLLREALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQ 705
            RR    Q+   LP+   +  ++  + +N +++I G+TG GKTT++PQ L       G      + +TQP             +E G  + + VGY +R + +  +    + + T G+LLR+   +P L   S ++VDE HER V+TD LL LLK +Q
Sbjct:  467 RRGSSWQESHPLPVDPHKDTILSAIEQNPVVVIAGDTGCGKTTRIPQLLLEHYILEGRGARCNVVITQPRRISAISVAQRVAQELGPNMRKNVGYQVRLESKPPARGGALLFCTVGILLRKLQGNPSLEGVSHVVVDEVHERDVNTDFLLILLKGIQ 623          
BLAST of CX671545 vs. ExPASy Swiss-Prot
Match: C3H31_ARATH (Zinc finger CCCH domain-containing protein 31 OS=Arabidopsis thaliana GN=At2g47680 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 5.476e-16
Identity = 55/164 (33.54%), Postives = 90/164 (54.88%), Query Frame = 1
Query:  217 SKPFFNDSSSRRQKILQQR-KSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRGGKLIGVTQPXXXXXXXXXXXXXEESGVELGQRVGYSIRFDDRTSTSTRIKYMTDGLLLREALLDPYLS--RYSVIIVDEAHERTVHTDVLLGLLKK 699
            S P  + SSS    +      SLPI ++++R+++++ +N + +IVGE G GK++Q+PQFL  A        I  TQP             +    +LG  +GY I      +  ++I + T G+LL E +LD  L+  +Y VII+DE HER+V +D++L  +K+
Sbjct:    4 SSPTSSSSSSESLPLPSSNFASLPIMAMKRRIIDKILENRVTLIVGEPGCGKSSQVPQFLLEANMAP----ILCTQPRRFAVVAVAKMVAKSRNSDLGGEIGYHIGHSKILTEGSKILFKTAGVLLDE-MLDKGLNALKYKVIILDEVHERSVESDLVLVCVKQ 162          
BLAST of CX671545 vs. ExPASy Swiss-Prot
Match: MLE_DROME (Dosage compensation regulator OS=Drosophila melanogaster GN=mle PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 7.152e-16
Identity = 67/207 (32.37%), Postives = 103/207 (49.76%), Query Frame = 1
Query:  232 NDSSSRRQKILQQRKSLPIASVEKRLVEEVRKNDILIIVGETGSGKTTQLPQFLFHAGFCRGG---KLIGVTQPXXXXXXXXXXXXXEESGVELGQRVGYSIRFDD-RTSTSTRIKYMTDGLLLREALLDPYLSRYSVIIVDEAHERTVHTDVLLGLLKKVQNARSKSADGHSNGNNKNADSDMILDRENDTNGINTLKQMPGRKFP 840
            ND+  R+   L+ R+ LPIA++   ++  +  N ++II G TG GKTTQ+ Q++     C G      I VTQP              E   +LG  VGYS+RF+         I + T G+LLR+  L+  L   S IIVDE HER V++D LL +L+ +        D + + +     + +   + +   GI  + ++PGR FP
Sbjct:  370 NDNEYRQ--FLEFREKLPIAAMRSEILTAINDNPVVIIRGNTGCGKTTQIAQYILDDYICSGQGGYANIYVTQPRRISAISVAERVARERCEQLGDTVGYSVRFESVFPRPYGAILFCTVGVLLRK--LEAGLRGVSHIIVDEIHERDVNSDFLLVILRDM-------VDTYPDLHVILMSATIDTTKFSKYFGICPVLEVPGRAFP 565          
The following BLAST results are available for this feature:
BLAST of CX671545 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
DHX9_BOVIN1.303e-1737.27ATP-dependent RNA helicase A OS=Bos taurus GN=DHX9... [more]
YUM14_USTMA1.702e-1735.68Putative DEAH-box ATP-dependent helicase UM11114 O... [more]
DQX1_BOVIN1.702e-1736.08ATP-dependent RNA helicase DQX1 OS=Bos taurus GN=D... [more]
DHX57_MOUSE1.702e-1733.14Putative ATP-dependent RNA helicase DHX57 OS=Mus m... [more]
DHX9_MOUSE3.792e-1731.98ATP-dependent RNA helicase A OS=Mus musculus GN=Dh... [more]
UCP12_SCHPO8.448e-1731.55Putative ATP-dependent RNA helicase ucp12 OS=Schiz... [more]
DQX1_MOUSE1.441e-1633.33ATP-dependent RNA helicase DQX1 OS=Mus musculus GN... [more]
DHX30_CHICK5.476e-1631.85Putative ATP-dependent RNA helicase DHX30 OS=Gallu... [more]
C3H31_ARATH5.476e-1633.54Zinc finger CCCH domain-containing protein 31 OS=A... [more]
MLE_DROME7.152e-1632.37Dosage compensation regulator OS=Drosophila melano... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_11F12_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11F12-L23-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671545 ID=CX671545; Name=CX671545; organism=Citrus sinensis; type=EST; length=860bp
GTAATTCTCGTTTGATTTCGTCTGTTGATTACCGGCATATGATGTTTATT
TTAAGAAGAAGAGAAGCAAAGAGAGCAACATCAAGTTCTTTCTCAAACAA
AAACTGAAGTGATAATCATAGTTGTTTGTTTTGGGAACTCTTCTGTACAT
CAATTAAGTCTCGAGATGCCGTCAGTGGCTGAAGTGAGTAACTCCACTCA
CAACCCCAAGCTTCACTCCAAACCCTTCTTCAATGACTCCTCTTCCAGGA
GGCAAAAAATTCTTCAACAGAGAAAATCCCTGCCAATTGCTTCAGTTGAG
AAACGACTTGTGGAGGAGGTCCGTAAAAATGATATTTTGATTATAGTTGG
TGAAACCGGAAGTGGAAAAACAACTCAATTGCCTCAGTTTCTGTTTCATG
CGGGATTTTGTCGCGGTGGTAAACTTATTGGAGTAACACAACCTAGGCGG
GTTGCGGCTGTCACTGTCGCTAAGCGGGTAGCAGAGGAATCTGGTGTTGA
GTTGGGCCAACGAGTTGGCTATTCCATTAGATTTGATGATAGGACTTCCA
CTTCAACAAGGATCAAGTACATGACTGATGGGCTGCTATTAAGGGAAGCA
TTACTTGATCCATACCTCTCTCGGTATTCTGTCATCATTGTTGATGAAGC
TCATGAGAGAACTGTCCATACTGATGTATTGCTGGGCTTGCTGAAAAAGG
TACAAAATGCAAGGTCAAAATCTGCAGATGGCCACTCTAATGGCAATAAC
AAGAATGCAGACAGTGACATGATACTGGACAGAGAAAATGACACAAATGG
CATCAATACTTTGAAGCAAATGCCAGGACGAAAATTTCCTCCTTTAAAGT
AATCATCATG
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