EG358270

Overview
NameEG358270
Unique NameEG358270
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EG358270 vs. ExPASy Swiss-Prot
Match: ERF1_TETTH (Eukaryotic peptide chain release factor subunit 1 OS=Tetrahymena thermophila GN=ERF1 PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.076e-48
Identity = 101/211 (47.87%), Postives = 136/211 (64.45%), Query Frame = 2
Query:    2 LAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDDGEIYDDSE 634
            LAGS DFK ELS + MFDPRL  KI+K+VDVSYGGENG NQAIEL+ ESL+NVKF+QEK +I K+F+ I+ D+G  V+G  DT++ L  G ++ ++ +E L   R   KN VT +I    +   +  N  +F+D     ELE  E  +L EW A  Y  FG  L F+T+KS EG QF +GF GIGG LRY++D+      +D+   Y++ E
Sbjct:  225 LAGSGDFKNELSTTQMFDPRLACKIIKIVDVSYGGENGLNQAIELAQESLTNVKFVQEKNVISKFFDCIAIDSGTVVYGVQDTMQLLLDGVIENILCFEELTTLRVTRKNKVTEQITHIFIPPNELNNPKHFKDG--EHELEKIEVENLTEWLAEHYSEFGAELYFITDKSAEGCQFVKGFSGIGGFLRYKVDLEHIVNPNDEYN-YEEEE 432          
BLAST of EG358270 vs. ExPASy Swiss-Prot
Match: RF1_THEON (Peptide chain release factor subunit 1 OS=Thermococcus onnurineus (strain NA1) GN=prf1 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.239e-20
Identity = 60/197 (30.46%), Postives = 101/197 (51.27%), Query Frame = 2
Query:    2 LAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWFANE-----YRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQL 577
            + G    K E    D     L+ K++ VVD+SY GE G  + +E +++ LS  + ++E++LI  +F  + +DTG   +G  +  KAL++GAVDTL++ E  D  R   K    G   +K ++ EQE +   ++   T       +  S  +W   E         G  +E ++  ++EG QF + FGG+G  LRY++
Sbjct:  221 IGGPGPTKEEFVDGDYLHHELRKKVIGVVDISYHGEYGLRELVEKASDILSEHEAVKERKLIQDFFRHLVKDTGLITYGEREVRKALELGAVDTLLISEGYDKVRVKAKCNACGWEELKTMS-EQEFHV--YKKKLTHCPKCGSQNISFEKWDVAEELIKLAEESGAEVEIISLDTEEGQQFYKAFGGLGAFLRYKI 414          
BLAST of EG358270 vs. ExPASy Swiss-Prot
Match: RF1_PYRFU (Peptide chain release factor subunit 1 OS=Pyrococcus furiosus GN=prf1 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.619e-20
Identity = 58/194 (29.90%), Postives = 101/194 (52.06%), Query Frame = 2
Query:    2 LAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQ-ETNQNNFRDSATSAELEVQ-EKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQL 577
            + G    K E  + D     L+ KI+ +VD+SY GE G  + +  +A+ L + + I+E+ L+ ++ + I +DTG   +G  +  KAL++GAVDTL++ E  D  R  +K    G   +K ++ E+ E  +   +         +  EK  + E         G  +E ++  ++EG QF R FGG+G ILR+++
Sbjct:  224 VGGPGPTKEEFVEGDYLHHELKKKIIGIVDISYHGEYGLRELVAKAADILRDHEVIRERNLVNEFLKHIVKDTGLATYGEREVRKALELGAVDTLLISEGYDKVRVHVKCNNCGWEELKTMSEEEYEAYKKRIQTCPKCGSQNLTFEKWEVAEELIKIAEEAGSNVEIISLDTEEGQQFYRAFGGLGAILRFRI 417          
BLAST of EG358270 vs. ExPASy Swiss-Prot
Match: RF1_PYRAB (Peptide chain release factor subunit 1 OS=Pyrococcus abyssi GN=prf1 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.761e-20
Identity = 58/194 (29.90%), Postives = 103/194 (53.09%), Query Frame = 2
Query:    2 LAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQ-ETNQNNF-RDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQL 577
            + G    K +  + D     L+ KI+ VVD+SY GE G  + +E +++ L + + I+EK+L+ ++ + + +DTG   +G  +  +AL++GAVDTL++ E  D  R   K    G   +K ++ E+ E  +    R     ++    EK  + E         G  +E ++  ++EG QF R FGG+G ILR+++
Sbjct:  224 VGGPGPTKEDFVEGDYLHHELKKKIIGVVDISYHGEYGLRELVEKASDILRDHEVIREKKLVNEFLKHVVKDTGLATYGEREVRRALEIGAVDTLLISEGYDKVRVRAKCNHCGWEELKTMSEEEFEVYKKKLTRCPKCGSQNLTIEKWDVAEELIKMAEEAGSDVEIISLDTEEGQQFYRAFGGLGAILRFKI 417          
BLAST of EG358270 vs. ExPASy Swiss-Prot
Match: RF1_METS3 (Peptide chain release factor subunit 1 OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=prf1 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.761e-20
Identity = 60/195 (30.77%), Postives = 101/195 (51.79%), Query Frame = 2
Query:    2 LAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTG---EIVIKHLNREQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQL 577
            + G    K E  + D  +  ++ KI+  VD SY GE G  + I+ SA+ L+++  +QEK+++ K+  E+ +D G   +G  +    L MGAVDTL++ E+L   R V K    G   EI +K    + E ++     S     L+ +   +L+E F  +       +E ++ +++EG Q  R FGG+  ILRY +
Sbjct:  220 IGGPGFTKEEFVKGDYLNYEIKDKIIATVDTSYTGEFGIREVIDKSADILNDLDVMQEKKVVQKFLHELVKDKGLASYGEREVRTNLIMGAVDTLLLSEDLTAMRKVFKCPSCGNEEEITVK---SQSEADKLEKPCSNCGEILKEESSQTLIEDFVEKAEEMNSEVELISTETEEGMQLLRAFGGVAAILRYHV 411          
BLAST of EG358270 vs. ExPASy Swiss-Prot
Match: RF1_PYRKO (Peptide chain release factor subunit 1 OS=Pyrococcus kodakaraensis GN=prf1 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.033e-20
Identity = 58/199 (29.15%), Postives = 103/199 (51.76%), Query Frame = 2
Query:    2 LAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIK-------HLNREQETNQNNFRDSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQL 577
            + G    K E  + D     L+ K++ VVD+SY GE G  + +E +++ L + + ++E++LI ++F+ + +DTG   +G  +  KAL++GAVD L++ E  D  R   K    G   +K       H+ ++Q T+          ++    EK  + E         G  +E ++  ++EG QF + FGG+G ILRY++
Sbjct:  221 IGGPGPTKEEFVEGDYLHHELRKKVIGVVDISYHGEYGLRELVEKASDILKDHEAVKERQLIQEFFKHLVKDTGMITYGEKEVRKALELGAVDKLLISEGYDKVRVRAKCNNCGWEELKTMSEGEFHVYKKQLTH-----CPKCGSQNITFEKWDVAEELIKMAEESGADVEIISLDTEEGQQFYKAFGGLGAILRYKI 414          
BLAST of EG358270 vs. ExPASy Swiss-Prot
Match: RF1_PYRHO (Peptide chain release factor subunit 1 OS=Pyrococcus horikoshii GN=prf1 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.370e-19
Identity = 59/198 (29.80%), Postives = 104/198 (52.53%), Query Frame = 2
Query:    2 LAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSAT------SAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQL 577
            + G    K E  + +     L+ KIL VVD+SY GE G  + +E +++ L + + I+EK+L+ ++ + + +DTG   +G  +  +AL++GAVD L++ E  +  R  +K    G   +K ++ E+      +R   T      S  L + EK  + E         G  +E ++  ++EG QF R FGG+G ILR+++
Sbjct:  224 IGGPGPTKEEFVEGEYLHHELKKKILGVVDISYHGEYGLRELVEKASDILRDHEVIREKKLVNEFLKHVVKDTGLATYGEREVRRALEIGAVDVLLISEGYNKVRVRVKCNHCGWEELKTMSEEE---YEVYRKKITKCPKCGSQNLTI-EKWDVAEELIKMAEEAGSDVEIISLDTEEGQQFYRAFGGLGAILRFKI 417          
BLAST of EG358270 vs. ExPASy Swiss-Prot
Match: RF1_METMP (Peptide chain release factor subunit 1 OS=Methanococcus maripaludis GN=prf1 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.370e-19
Identity = 59/197 (29.95%), Postives = 103/197 (52.28%), Query Frame = 2
Query:    2 LAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEE-ISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNT---VTGEIVIKHLNREQETNQNNFRDSAT-SAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQL 577
            L G  + K E ++ D     L+ KI+   D+ Y  E G  + ++ +++ L ++  ++EK LI ++F+E I  D G   +G    +K L+MGA+DTLIV E++ ITR  +K     +T E+ +K     +   Q   +   T    + + E+  ++E+ ++        L  V+  ++EGSQ  R F G+  ILRY+L
Sbjct:  223 LGGPGNTKNEFAEKDYLHHELKKKIIDTFDLCYTEEFGIRELLDKASDLLRDIDLMKEKNLIQRFFKELIKDDGGLSAYGEAQVMKYLEMGAIDTLIVTEDIGITRVTVKCNNCDITQEVNVKTNEMFKFEEQLKTKACPTCGGAMYIDEEKDIIEYLSDLCNMHNTDLIVVSTDTEEGSQISRAFKGMAAILRYKL 419          
BLAST of EG358270 vs. ExPASy Swiss-Prot
Match: RF1_THESM (Peptide chain release factor subunit 1 OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=prf1 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.789e-19
Identity = 60/195 (30.77%), Postives = 100/195 (51.28%), Query Frame = 2
Query:    2 LAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRY-VLKNTVTGEIVIKHLNREQETNQNNFR--DSATSAELEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQL 577
            + G    K E  + +     L+ +IL VVD+SY GE G  + +E +++ L   + ++E++L+ ++F+ + +DTG   +G  +  KAL++GAVD L++ E  D  R   L N    E +      E E  + N +      S  + V EK  + E         G  +E ++  ++EG QF + FGGI  ILRY+L
Sbjct:  221 IGGPGPTKEEFVEGEYLHHELRKRILGVVDISYHGEYGLRELVEKASDILREHEAVKERKLVQQFFKHLVKDTGLITYGEKEVRKALELGAVDILLLSEGYDRVRVKALCNNCGWEELKTMTEAEFELYKKNLKACPKCNSQNISV-EKWDVAEELIKIAEEGGAEVEIISLDTEEGQQFYKAFGGIAAILRYKL 414          
BLAST of EG358270 vs. ExPASy Swiss-Prot
Match: RF1_METBU (Peptide chain release factor subunit 1 OS=Methanococcoides burtonii (strain DSM 6242) GN=prf1 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.789e-19
Identity = 56/200 (28.00%), Postives = 107/200 (53.50%), Query Frame = 2
Query:    2 LAGSADFKTELSQSDMFDPRLQAKILKVVDVSYGGENGFNQAIELSAESLSNVKFIQEKRLIGKYFEEISQDTGKYVFGADDTLKALDMGAVDTLIVWENLDITRYVLKNTVTGEIVIKHLNREQETNQNNFRDSATSAE----------LEVQEKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRY 571
            + G +  K E    + F   ++ K+L + DV+Y  E+G ++ +  ++E L ++  + EK+L+ ++F E+  D+GK  +G D+  + L +GAVD L++ E+L   R  +K T          + EQ+T++  F+   +S+           LE+ EK  +++  +    + G  +EF++   +EGSQ  + FGG+  ILR+
Sbjct:  220 IGGPSPTKEEFEAGNFFHHEIEKKVLDLFDVAYTDESGLSELVNAASERLEDLDLMVEKKLMQQFFRELVSDSGKATYGEDNVRENLIIGAVDILLISEDLRAVRETVKCT--------SCDYEQKTSR-EFKPGDSSSPTGNCPKCGSYLEITEKVDVVDQLSEICDQMGTRVEFISTDFEEGSQLLKAFGGVVAILRF 410          
The following BLAST results are available for this feature:
BLAST of EG358270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
ERF1_TETTH1.076e-4847.87Eukaryotic peptide chain release factor subunit 1 ... [more]
RF1_THEON1.239e-2030.46Peptide chain release factor subunit 1 OS=Thermoco... [more]
RF1_PYRFU1.619e-2029.90Peptide chain release factor subunit 1 OS=Pyrococc... [more]
RF1_PYRAB2.761e-2029.90Peptide chain release factor subunit 1 OS=Pyrococc... [more]
RF1_METS32.761e-2030.77Peptide chain release factor subunit 1 OS=Methanob... [more]
RF1_PYRKO8.033e-2029.15Peptide chain release factor subunit 1 OS=Pyrococc... [more]
RF1_PYRHO1.370e-1929.80Peptide chain release factor subunit 1 OS=Pyrococc... [more]
RF1_METMP1.370e-1929.95Peptide chain release factor subunit 1 OS=Methanoc... [more]
RF1_THESM1.789e-1930.77Peptide chain release factor subunit 1 OS=Thermoco... [more]
RF1_METBU1.789e-1928.00Peptide chain release factor subunit 1 OS=Methanoc... [more]

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Properties
Property NameValue
Genbank description9d12 Citrus sinensis flesh suppression subtractive hybridization (SSH) cDNA library Moro nucellare 58-8D-I cultivar Citrus sinensis cDNA clone Cl009d12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG358270 ID=EG358270; Name=EG358270; organism=Citrus sinensis; type=EST; length=725bp
ACTTGCTGGATCAGCCGACTTTAAAACTGAGCTTAGTCAGTCAGATATGT
TTGATCCTCGCCTTCAGGCTAAAATTTTGAAAGTAGTAGATGTTTCTTAT
GGAGGGGAGAATGGATTTAACCAGGCAATTGAGCTATCTGCTGAAAGTCT
GTCCAATGTGAAGTTTATACAAGAGAAGCGTTTGATAGGAAAGTATTTTG
AAGAGATAAGCCAGGATACTGGGAAGTATGTTTTTGGTGCTGATGACACG
CTGAAAGCTTTGGATATGGGTGCTGTCGACACGCTAATTGTTTGGGAAAA
TTTGGACATTACTAGGTATGTCTTGAAAAATACTGTTACTGGTGAGATTG
TCATAAAACATTTGAACAGGGAGCAAGAGACCAATCAGAACAACTTTCGT
GATTCTGCCACCTCTGCTGAATTGGAGGTTCAGGAAAAGTCATCGCTGCT
TGAGTGGTTTGCAAATGAATACAGGAGGTTTGGTTGCACACTCGAGTTTG
TTACCAACAAATCACAAGAGGGATCCCAGTTTTGCAGAGGCTTTGGTGGT
ATTGGTGGAATACTCCGCTACCAGCTTGATATGAGATCATTTGATGAGTT
TTCTGATGATGGAGAAATTTATGATGATTCTGAATAGCAATCAATCAAAC
CTACCCCATTGCTGGTGCAGGATGACGACGTGAAGGGCCTGCACCAGCGC
GCGATTCGTCGCGCCAACTTTGGAG
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