CX671533

Overview
NameCX671533
Unique NameCX671533
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length705
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8246 contig Csv1_Contig8246:392..1096. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX671533 vs. ExPASy Swiss-Prot
Match: CATA_STAAC (Catalase OS=Staphylococcus aureus (strain COL) GN=katA PE=3 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.270e-14
Identity = 54/170 (31.76%), Postives = 87/170 (51.18%), Query Frame = -3
Query:  230 PGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVNAPK-------CPHRNNHYDGFMNFMHRDE--EVDYFPS---RYDPTRHAERYPIPSDVITGRREKACIEKENNFKQPGERYRSWAPDRQERFLNRWIKALCDPRVTHEVRSIWVSYWSQADRSLGQKLASRLNV 703
            PG+ +S DKMLQ R+F+YGD QR+RLG N+  +PVN PK       CP      DG M  +  ++     Y+P+   ++D     ++ P P+D   G       + +N F+QPG+ +R  + D +ER       A+    VT +V+   + +  +AD   G+ +A  L +
Sbjct:  322 PGLDFSPDKMLQGRLFSYGDAQRYRLGVNHWQIPVNQPKGVGIENICPFSR---DGQMRVVDNNQGGGTHYYPNNHGKFDSQPEYKKPPFPTDGY-GYEYNQRQDDDNYFEQPGKLFRLQSEDAKERIFTNTANAM--EGVTDDVKRRHIRHCYKADPEYGKGVAKALGI 485          
BLAST of CX671533 vs. ExPASy Swiss-Prot
Match: CATA_STAAB (Catalase OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=katA PE=3 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.270e-14
Identity = 54/170 (31.76%), Postives = 87/170 (51.18%), Query Frame = -3
Query:  230 PGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVNAPK-------CPHRNNHYDGFMNFMHRDE--EVDYFPS---RYDPTRHAERYPIPSDVITGRREKACIEKENNFKQPGERYRSWAPDRQERFLNRWIKALCDPRVTHEVRSIWVSYWSQADRSLGQKLASRLNV 703
            PG+ +S DKMLQ R+F+YGD QR+RLG N+  +PVN PK       CP      DG M  +  ++     Y+P+   ++D     ++ P P+D   G       + +N F+QPG+ +R  + D +ER       A+    VT +V+   + +  +AD   G+ +A  L +
Sbjct:  322 PGLDFSPDKMLQGRLFSYGDAQRYRLGVNHWQIPVNQPKGVGIENICPFSR---DGQMRVVDNNQGGGTHYYPNNHGKFDSQPEYKKPPFPTDGY-GYEYNQRQDDDNYFEQPGKLFRLQSEDAKERIFTNTANAM--EGVTDDVKRRHIRHCYKADPEYGKGVAKALGI 485          
BLAST of CX671533 vs. ExPASy Swiss-Prot
Match: CATA_STAA8 (Catalase OS=Staphylococcus aureus (strain NCTC 8325) GN=katA PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.270e-14
Identity = 54/170 (31.76%), Postives = 87/170 (51.18%), Query Frame = -3
Query:  230 PGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVNAPK-------CPHRNNHYDGFMNFMHRDE--EVDYFPS---RYDPTRHAERYPIPSDVITGRREKACIEKENNFKQPGERYRSWAPDRQERFLNRWIKALCDPRVTHEVRSIWVSYWSQADRSLGQKLASRLNV 703
            PG+ +S DKMLQ R+F+YGD QR+RLG N+  +PVN PK       CP      DG M  +  ++     Y+P+   ++D     ++ P P+D   G       + +N F+QPG+ +R  + D +ER       A+    VT +V+   + +  +AD   G+ +A  L +
Sbjct:  322 PGLDFSPDKMLQGRLFSYGDAQRYRLGVNHWQIPVNQPKGVGIENICPFSR---DGQMRVVDNNQGGGTHYYPNNHGKFDSQPEYKKPPFPTDGY-GYEYNQRQDDDNYFEQPGKLFRLQSEDAKERIFTNTANAM--EGVTDDVKRRHIRHCYKADPEYGKGVAKALGI 485          
BLAST of CX671533 vs. ExPASy Swiss-Prot
Match: CATA_STAA3 (Catalase OS=Staphylococcus aureus (strain USA300) GN=katA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.270e-14
Identity = 54/170 (31.76%), Postives = 87/170 (51.18%), Query Frame = -3
Query:  230 PGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVNAPK-------CPHRNNHYDGFMNFMHRDE--EVDYFPS---RYDPTRHAERYPIPSDVITGRREKACIEKENNFKQPGERYRSWAPDRQERFLNRWIKALCDPRVTHEVRSIWVSYWSQADRSLGQKLASRLNV 703
            PG+ +S DKMLQ R+F+YGD QR+RLG N+  +PVN PK       CP      DG M  +  ++     Y+P+   ++D     ++ P P+D   G       + +N F+QPG+ +R  + D +ER       A+    VT +V+   + +  +AD   G+ +A  L +
Sbjct:  322 PGLDFSPDKMLQGRLFSYGDAQRYRLGVNHWQIPVNQPKGVGIENICPFSR---DGQMRVVDNNQGGGTHYYPNNHGKFDSQPEYKKPPFPTDGY-GYEYNQRQDDDNYFEQPGKLFRLQSEDAKERIFTNTANAM--EGVTDDVKRRHIRHCYKADPEYGKGVAKALGI 485          
BLAST of CX671533 vs. ExPASy Swiss-Prot
Match: CATA_HELPY (Catalase OS=Helicobacter pylori GN=katA PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.270e-14
Identity = 55/159 (34.59%), Postives = 81/159 (50.94%), Query Frame = -3
Query:  269 PGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVNAPKCPHRNNHYDGFMNFMHRDEEVDYFPSRYDPTRHAERYPIPSDVITGRREKACIEKE-------------NNFKQPGERYRSWAPDRQERFLNRWIKALCDPRVTH-EVRSIWVSYWSQAD 703
            PGI YS D+MLQ R+F+YGDT R+RLG NY  +PVN P+CP  ++  DG+M   +     +Y PS     +  +    P      +   A IEKE             + + QPG+ YRS   D +ER  +   ++L    VTH E+    + ++ +AD
Sbjct:  322 PGIGYSPDRMLQGRLFSYGDTHRYRLGVNYPQIPVNKPRCPFHSSSRDGYMQNGYYGSLQNYTPSSLPGYKEDKSARDP------KFNLAHIEKEFEVWNWDYRADDSDYYTQPGDYYRSLPADEKERLHDTIGESLA--HVTHKEIVDKQLEHFKKAD 472          
BLAST of CX671533 vs. ExPASy Swiss-Prot
Match: CATA_VIBPA (Catalase OS=Vibrio parahaemolyticus GN=VPA0305 PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.658e-14
Identity = 51/155 (32.90%), Postives = 79/155 (50.97%), Query Frame = -3
Query:  245 PGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVNAPKCPHRNNHYDGFMNFMH-RDEEVDYFPSRYDPTRHAERYPIPSDVITGRREKACIEKENNFKQPGERYRSW-APDRQERFLNRWIKALCDPRVTHEVRSIWVSYWSQADRSLGQKLA 703
            PGI  S D++LQ R+FAY DTQ +RLG N   LPVN P     N++ +G  N     + +V+Y PSR        ++      + G  ++  I K  +F Q G  YRS    DR +   N  +    +  +  ++++  VSY+ +AD+  G +LA
Sbjct:  336 PGIEPSEDRLLQGRLFAYADTQLYRLGANLFQLPVNRPLTSVNNHNQNGLSNNAQLSNGDVNYEPSRKLNLAEDNQFKAVETKLVGTVQQKAISKPRDFYQAGVLYRSMNEQDRSDLIAN--LAGDLNKVIDKDIKATMVSYFYRADKEYGSRLA 488          
BLAST of CX671533 vs. ExPASy Swiss-Prot
Match: CATA_STAWA (Catalase OS=Staphylococcus warneri GN=katA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.658e-14
Identity = 55/170 (32.35%), Postives = 85/170 (50.00%), Query Frame = -3
Query:  230 PGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVNAPK-------CPHRNNHYDGFMNFMHRDE--EVDYFPSR---YDPTRHAERYPIPSDVITGRREKACIEKENNFKQPGERYRSWAPDRQERFLNRWIKALCDPRVTHEVRSIWVSYWSQADRSLGQKLASRLNV 703
            PG+ YS DKMLQ R+F YGD QR+RLG N+  +PVN PK       CP      DG M  +  ++     Y+P+    YD     ++ P P+D   G       + +N F+QPG+ +R  + + +ER       A+    VT +V+   + +  +AD   G+ +A  L +
Sbjct:  322 PGLDYSPDKMLQGRLFPYGDAQRYRLGVNHWQIPVNQPKGVGIENLCPFSR---DGQMRILDDNQGGGPHYYPNNQGVYDSQPEFKKPPFPADG-DGYEYNQRQDDDNYFEQPGKLFRLQSDEAKERIFTNTANAM--DGVTEDVKRRHIRHCYKADPDYGKGVAKALGI 485          
BLAST of CX671533 vs. ExPASy Swiss-Prot
Match: CATA_HELPJ (Catalase OS=Helicobacter pylori J99 GN=katA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.658e-14
Identity = 51/153 (33.33%), Postives = 79/153 (51.63%), Query Frame = -3
Query:  269 PGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVNAPKCPHRNNHYDGFMNFMHRDEEVDYFPSRYDPTRHAERYPIPSDVITGRREKACI-------EKENNFKQPGERYRSWAPDRQERFLNRWIKALCDPRVTH-EVRSIWVSYWSQAD 703
            PGI YS D+MLQ R+F+YGDT R+RLG NY  +PVN P+CP  ++  DG+M   +     +Y PS     +  +    P   +    ++  +       E  + + QPG+ YRS   D +ER  +    +L    VTH E+    + ++ +AD
Sbjct:  322 PGIGYSPDRMLQGRLFSYGDTHRYRLGVNYPQIPVNRPRCPFHSSSRDGYMQNGYYGSLQNYTPSSLPGYKEDKSARDPKFNLAHIEKEFEVWNWDYRAEDSDYYTQPGDYYRSLPADEKERLYDTIGGSLA--HVTHKEIVDKQLEHFKKAD 472          
BLAST of CX671533 vs. ExPASy Swiss-Prot
Match: CATA_DICDI (Catalase-A OS=Dictyostelium discoideum GN=catA PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.829e-14
Identity = 56/163 (34.36%), Postives = 83/163 (50.92%), Query Frame = -3
Query:  230 PGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVNAP---KCPHRNNHYDGFMNFM-HRDEEVDYFPSRY-DPTRHAERYPIPSDVITGRREKACIEKENNFKQPGERYRSWAPDRQERFLNRWIKALCDPRVTHEVRSIWVSYWSQADRSLGQKLASRLNV 703
            PGI  S DKMLQ R+F+Y DT RHRLG NY  +PVN P   K   +N   DGFM    +  +  +Y P+ +  P  H E      DV      +      ++F QPG+ YR  + D + RF++  +  +    +  E++   VS + +AD+ LG +L   L +
Sbjct:  321 PGIEPSPDKMLQGRLFSYPDTHRHRLGVNYQQIPVNCPFAVKGGVKNYQRDGFMAVNGNGGKGPNYQPNSFGGPEPHPEFAQHKFDVSGFAARQPYNHPNDDFVQPGDLYRLMSEDAKSRFVSNLVGHMSGVTI-KEIQVRAVSNFYKADKDLGARLCKGLGI 482          
BLAST of CX671533 vs. ExPASy Swiss-Prot
Match: CATA_STAAU (Catalase OS=Staphylococcus aureus GN=katA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.825e-14
Identity = 53/170 (31.18%), Postives = 87/170 (51.18%), Query Frame = -3
Query:  230 PGIYYSNDKMLQCRIFAYGDTQRHRLGPNYLMLPVNAPK-------CPHRNNHYDGFMNFMHRDE--EVDYFPS---RYDPTRHAERYPIPSDVITGRREKACIEKENNFKQPGERYRSWAPDRQERFLNRWIKALCDPRVTHEVRSIWVSYWSQADRSLGQKLASRLNV 703
            PG+ +S DKMLQ R+F+YGD QR+RLG N+  +PVN PK       CP      DG M  +  ++     ++P+   ++D     ++ P P+D   G       + +N F+QPG+ +R  + D +ER       A+    VT +V+   + +  +AD   G+ +A  L +
Sbjct:  322 PGLDFSPDKMLQGRLFSYGDAQRYRLGVNHWQIPVNQPKGVGIENICPFSR---DGQMRVVDNNQGGGTHHYPNNHGKFDSQPEYKKPPFPTDGY-GYEYNQRQDDDNYFEQPGKLFRLQSEDAKERIFTNTANAM--EGVTDDVKRRHIRHCYKADPEYGKGVAKALGI 485          
The following BLAST results are available for this feature:
BLAST of CX671533 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
CATA_STAAC1.270e-1431.76Catalase OS=Staphylococcus aureus (strain COL) GN=... [more]
CATA_STAAB1.270e-1431.76Catalase OS=Staphylococcus aureus (strain bovine R... [more]
CATA_STAA81.270e-1431.76Catalase OS=Staphylococcus aureus (strain NCTC 832... [more]
CATA_STAA31.270e-1431.76Catalase OS=Staphylococcus aureus (strain USA300) ... [more]
CATA_HELPY1.270e-1434.59Catalase OS=Helicobacter pylori GN=katA PE=1 SV=2[more]
CATA_VIBPA1.658e-1432.90Catalase OS=Vibrio parahaemolyticus GN=VPA0305 PE=... [more]
CATA_STAWA1.658e-1432.35Catalase OS=Staphylococcus warneri GN=katA PE=3 SV... [more]
CATA_HELPJ1.658e-1433.33Catalase OS=Helicobacter pylori J99 GN=katA PE=3 S... [more]
CATA_DICDI2.829e-1434.36Catalase-A OS=Dictyostelium discoideum GN=catA PE=... [more]
CATA_STAAU4.825e-1431.18Catalase OS=Staphylococcus aureus GN=katA PE=3 SV=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS10_11F06_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11F06-L11-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671533 ID=CX671533; Name=CX671533; organism=Citrus sinensis; type=EST; length=705bp
TTTTTTTTTTTTTTTTTGAACTTCATAAAACAGACTTTTATTAATTGAAA
CAACAGGAAAAGAGTCACATAACATGCAAGTTTATTTTCTATATTACAAT
ATACAACAGCAAACATAGGATCGAAATTCTTCACATAGCTGCACCCTTGG
TGTTCACTCCTTGCTCACTCTTGGCAAGTCAAAAGCATCCAGTGTTCCAG
TTCAAGTGACACCTTCAAATGCTTGGCCTCACATTGAGACGAGAAGCTAG
CTTCTGACCCAGAGATCTGTCGGCCTGAGACCAGTAAGAGACCCATATGC
TGCGAACCTCATGGGTGACACGTGGGTCACATAAAGCCTTAATCCATCGA
TTAAGGAACCTCTCTTGCCTGTCTGGGGCCCAGGATCGGTATCTCTCTCC
AGGCTGCTTGAAGTTGTTTTCCTTCTCAATGCAAGCCTTCTCACGCCTTC
CTGTAATTACATCAGAAGGAATGGGATATCTCTCAGCATGACGAGTAGGA
TCATACCTCGAAGGAAAGTAATCGACCTCCTCATCCCTGTGCATGAAATT
CATGAAACCATCATAATGATTGTTGCGATGAGGACATTTGGGTGCATTAA
CTGGAAGCATCAAGTAGTTGGGTCCAAGGCGATGCCTCTGGGTATCACCA
TAGGCAAAGATTCGACATTGGAGCATCTTATCATTTGAGTAGTAGATCCC
AGGAA
back to top