CX671522

Overview
NameCX671522
Unique NameCX671522
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length876
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671522 vs. ExPASy Swiss-Prot
Match: S23A3_HUMAN (Solute carrier family 23 member 3 OS=Homo sapiens GN=SLC23A3 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 3.675e-15
Identity = 56/209 (26.79%), Postives = 92/209 (44.02%), Query Frame = -1
Query:  229 IGAALVTSAESTGTFIAASRFAGATAPPAHVLSRSIGLQGIGMLVEGIFGSLVGTTASVENVGLLGLTHIGSRRVVQISTAFMXXXXXXXXXXXXXXSIPLPIFAAIYCVLLGIVAAVGITFIQFANNNSMRNXXXXXXXXXXXXXIPQYFASKTTEDGHGPVRTGGGW--FNDIWNTIFSSPPTVAMIVGTVLDNTLDARDTVADRGL 849
            I  AL  S  S G +    R      PP H  SR + L+G+G ++ G+ GS +GT +S  NVG +GL   GS++V  +                   +IPLP+   +  V   +V + G +    A+ +S RN             +P++F          PV    GW   + + +++ + P  +A + G +L+NT+    T  +RGL
Sbjct:  321 ISMALAASTSSLGCYALCGRLLHLPPPPPHACSRGLSLEGLGSVLAGLLGSPMGTASSFPNVGKVGLIQAGSQQVAHLVGLLCVGLGLSPRLAQLLTTIPLPVVGGVLGVTQAVVLSAGFSSFYLADIDSGRNIFIVGFSIFMALLLPRWFR-------EAPVLFSTGWSPLDVLLHSLLTQPIFLAGLSGFLLENTIPG--TQLERGL 520          
BLAST of CX671522 vs. ExPASy Swiss-Prot
Match: NAT9_ARATH (Putative nucleobase-ascorbate transporter 9 OS=Arabidopsis thaliana GN=NAT9 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.186e-15
Identity = 53/160 (33.12%), Postives = 72/160 (45.00%), Query Frame = -1
Query:  397 FRASHVFGMIGAALVTSAESTGTFIAASRFAGATAPPAHVLSRSIGLQGIGMLVEGIFGSLVGTTASVENVGLLGLTHIGSRRVVQISTAFMXXXXXXXXXXXXXXSIPLPIFAAIYCVLLGIVAAVGITFIQFANNNSMRNXXXXXXXXXXXXXIPQYF 876
            F  +  F M+ A+ VT  ESTG F A++R+                                      +NVGLL +T +GSRRV+QIS AFM              SIPLPI A++YC++L  V++ G++F+QF N NS                IPQYF
Sbjct:  268 FDITDSFAMMAASFVTLFESTGLFYASARYG-------------------------------------KNVGLLAMTKVGSRRVIQISAAFMLFFSIFGKFGAFFASIPLPIMASLYCIVLCFVSSAGLSFLQFCNLNSFNTKFILGFSFFMAISIPQYF 390          
The following BLAST results are available for this feature:
BLAST of CX671522 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
S23A3_HUMAN3.675e-1526.79Solute carrier family 23 member 3 OS=Homo sapiens ... [more]
NAT9_ARATH8.186e-1533.13Putative nucleobase-ascorbate transporter 9 OS=Ara... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS10_11E12_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11E12-J23-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671522 ID=CX671522; Name=CX671522; organism=Citrus sinensis; type=EST; length=876bp
TTTTTTTGGGAGTTTATTTTTATTTTTTTCTGATTTAAATTGCACCCCAT
CATACACGTTAAACATGAAAGTTGCTGGAAGCATGGTGTTAATATACAAG
CAGTTTAAAGTTTAAACTGTACTCTAAAGAAATCTAGTGGGGATATACTC
ATTTATCCTAAGGGGAAAACTGTAGAACTCGTCATTTCTAGAGTCGCCCT
TCCTGTGCTGGAAGGGTTTCCACCAGGGGAGTCCTCTGTCGGCAACTGTA
TCTCTTGCATCAAGTGTGTTATCTAGCACTGTCCCAACGATCATTGCTAC
GGTTGGAGGTGATGAAAAGATTGTGTTCCATATGTCATTAAACCATCCAC
CACCCGTTCTAACTGGCCCATGACCATCCTCAGTGGTTTTCGAGGCAAAG
TATTGAGGAATTGATATGCCAAGGAACAGAGAGAGGCCCAAAATATAAAT
GTTTCTCATGGAATTATTATTTGCAAACTGTATGAAAGTAATCCCAACAG
CAGCAACTATGCCTAATAGAACACAGTATATGGCAGCAAATATTGGCAAT
GGAATGGATGCAAAGAAGGCACCAAACTTCCCAAATATGGAGAAAAATAT
CATGAACGCAGTTGAAATCTGCACCACTCTTCTGCTGCCTATGTGTGTTA
GTCCGAGGAGGCCAACATTTTCCACAGATGCAGTAGTACCAACAAGAGAA
CCAAAAATTCCTTCAACCAGCATGCCAATACCCTGCAGGCCAATACTTCG
GCTGAGGACATGTGCTGGAGGAGCTGTAGCACCTGCAAACCGTGATGCTG
CAATAAATGTTCCAGTTGACTCTGCAGATGTTACAAGTGCTGCTCCTATC
ATCCCAAAGACATGGCTTGCTCTGAA
back to top