CX671516

Overview
NameCX671516
Unique NameCX671516
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length899
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX671516 vs. ExPASy Swiss-Prot
Match: KPCB_RAT (Protein kinase C beta type OS=Rattus norvegicus GN=Prkcb PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 8.808e-12
Identity = 33/91 (36.26%), Postives = 53/91 (58.24%), Query Frame = -2
Query:  200 LLQKEASKRLGSGPGGSQEIKSHKWFKMINWKKLEARETRPSFLPEVAGKHCVANFEECWTNMPLLDSPVAS---PKFNENPFKGFTYVRP 463
            L+ K   KRLG GP G ++IK H +F+ I+W+KLE +E +P + P+   K   +NF++ +T  P+  +P         ++N F GF+Y  P
Sbjct:  575 LMTKHPGKRLGCGPEGERDIKEHAFFRYIDWEKLERKEIQPPYKPKARDKRDTSNFDKEFTRQPVELTPTDKLFIMNLDQNEFAGFSYTNP 665          
BLAST of CX671516 vs. ExPASy Swiss-Prot
Match: KPCB_RABIT (Protein kinase C beta type OS=Oryctolagus cuniculus GN=PRKCB PE=2 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 8.808e-12
Identity = 33/91 (36.26%), Postives = 53/91 (58.24%), Query Frame = -2
Query:  200 LLQKEASKRLGSGPGGSQEIKSHKWFKMINWKKLEARETRPSFLPEVAGKHCVANFEECWTNMPLLDSPVAS---PKFNENPFKGFTYVRP 463
            L+ K   KRLG GP G ++IK H +F+ I+W+KLE +E +P + P+   K   +NF++ +T  P+  +P         ++N F GF+Y  P
Sbjct:  575 LMTKHPGKRLGCGPEGERDIKDHAFFRYIDWEKLERKEIQPPYKPKARDKRDTSNFDKEFTRQPVELTPTDKLFIMNLDQNEFAGFSYTNP 665          
BLAST of CX671516 vs. ExPASy Swiss-Prot
Match: KPCB_HUMAN (Protein kinase C beta type OS=Homo sapiens GN=PRKCB PE=1 SV=4)

HSP 1 Score: 71.2478 bits (173), Expect = 8.808e-12
Identity = 33/91 (36.26%), Postives = 53/91 (58.24%), Query Frame = -2
Query:  200 LLQKEASKRLGSGPGGSQEIKSHKWFKMINWKKLEARETRPSFLPEVAGKHCVANFEECWTNMPLLDSPVAS---PKFNENPFKGFTYVRP 463
            L+ K   KRLG GP G ++IK H +F+ I+W+KLE +E +P + P+   K   +NF++ +T  P+  +P         ++N F GF+Y  P
Sbjct:  575 LMTKHPGKRLGCGPEGERDIKEHAFFRYIDWEKLERKEIQPPYKPKARDKRDTSNFDKEFTRQPVELTPTDKLFIMNLDQNEFAGFSYTNP 665          
BLAST of CX671516 vs. ExPASy Swiss-Prot
Match: KPCA_RABIT (Protein kinase C alpha type OS=Oryctolagus cuniculus GN=PRKCA PE=2 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 8.808e-12
Identity = 35/91 (38.46%), Postives = 58/91 (63.74%), Query Frame = -2
Query:  200 LLQKEASKRLGSGPGGSQEIKSHKWFKMINWKKLEARETRPSFLPEVAGKHCVANFEECWT-NMPLLDSP--VASPKFNENPFKGFTYVRP 463
            L+ K  +KRLG GP G ++++ H +F+ I+W+KLE RE +P F P+V GK    NF++ +T   P++  P  +     +++ F+GF+YV P
Sbjct:  572 LMTKHPAKRLGCGPEGERDVREHAFFRRIDWEKLENREIQPPFKPKVCGKG-AENFDKFFTRGQPVVTPPDQLVIANIDQSDFEGFSYVNP 661          
BLAST of CX671516 vs. ExPASy Swiss-Prot
Match: KS6A4_MOUSE (Ribosomal protein S6 kinase alpha-4 OS=Mus musculus GN=Rps6ka4 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.150e-11
Identity = 38/100 (38.00%), Postives = 60/100 (60.00%), Query Frame = -2
Query:  176 LFQLLQKEASKRLGSGPGGSQEIKSHKWFKMINWKKLEARETRPSFLPEVAGKHCVANFEECWTNMPLLDSPVASPKFNE-NPFKGFTYVRPAASFLQRN 472
            L +LL K+  KRLG+GP G+QE+KSH +F+ ++W  L AR+    F P++  +  V NF E +T +  + SP  SP   +   F+G+++V P+  F   N
Sbjct:  273 LQRLLCKDPKKRLGAGPQGAQEVKSHPFFQGLDWWALAARKIPAPFRPQIRSELDVGNFAEEFTRLEPVYSPAGSPPPGDPRIFQGYSFVAPSILFDHNN 372          
BLAST of CX671516 vs. ExPASy Swiss-Prot
Match: KS6B1_BOVIN (Ribosomal protein S6 kinase beta-1 OS=Bos taurus GN=RPS6KB1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.502e-11
Identity = 36/94 (38.30%), Postives = 58/94 (61.70%), Query Frame = -2
Query:  197 LFQLLQKEASKRLGSGPGGSQEIKSHKWFKMINWKKLEARETRPSFLPEVAGKHCVANFEECWTNMPLLDSP--VASPKFNENPFKGFTYVRPA 472
            L +LL++ A+ RLG+GPG + E+++H +F+ INW++L AR+  P F P +  +  V+ F+  +T    +DSP   A  +     F GFTYV P+
Sbjct:  324 LKKLLKRNAASRLGAGPGDAGEVQAHPFFRHINWEELLARKVEPPFKPLLQSEEDVSQFDSKFTRQTPVDSPDDSALSESANQVFLGFTYVAPS 417          
BLAST of CX671516 vs. ExPASy Swiss-Prot
Match: KS6B1_RAT (Ribosomal protein S6 kinase beta-1 OS=Rattus norvegicus GN=Rps6kb1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.962e-11
Identity = 36/94 (38.30%), Postives = 58/94 (61.70%), Query Frame = -2
Query:  197 LFQLLQKEASKRLGSGPGGSQEIKSHKWFKMINWKKLEARETRPSFLPEVAGKHCVANFEECWTNMPLLDSPVAS--PKFNENPFKGFTYVRPA 472
            L +LL++ A+ RLG+GPG + E+++H +F+ INW++L AR+  P F P +  +  V+ F+  +T    +DSP  S   +     F GFTYV P+
Sbjct:  324 LKKLLKRNAASRLGAGPGDAGEVQAHPFFRHINWEELLARKVEPPFKPLLQSEEDVSQFDSKFTRQTPVDSPDDSTLSESANQVFLGFTYVAPS 417          
BLAST of CX671516 vs. ExPASy Swiss-Prot
Match: KS6B1_RABIT (Ribosomal protein S6 kinase beta-1 OS=Oryctolagus cuniculus GN=RPS6KB1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.962e-11
Identity = 36/94 (38.30%), Postives = 58/94 (61.70%), Query Frame = -2
Query:  197 LFQLLQKEASKRLGSGPGGSQEIKSHKWFKMINWKKLEARETRPSFLPEVAGKHCVANFEECWTNMPLLDSPVAS--PKFNENPFKGFTYVRPA 472
            L +LL++ A+ RLG+GPG + E+++H +F+ INW++L AR+  P F P +  +  V+ F+  +T    +DSP  S   +     F GFTYV P+
Sbjct:  324 LKKLLKRNAASRLGAGPGDAGEVQAHPFFRHINWEELLARKVEPPFKPLLQSEEDVSQFDSKFTRQTPVDSPDDSTLSESANQVFLGFTYVAPS 417          
BLAST of CX671516 vs. ExPASy Swiss-Prot
Match: KS6B1_MOUSE (Ribosomal protein S6 kinase beta-1 OS=Mus musculus GN=Rps6kb1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.962e-11
Identity = 36/94 (38.30%), Postives = 58/94 (61.70%), Query Frame = -2
Query:  197 LFQLLQKEASKRLGSGPGGSQEIKSHKWFKMINWKKLEARETRPSFLPEVAGKHCVANFEECWTNMPLLDSPVAS--PKFNENPFKGFTYVRPA 472
            L +LL++ A+ RLG+GPG + E+++H +F+ INW++L AR+  P F P +  +  V+ F+  +T    +DSP  S   +     F GFTYV P+
Sbjct:  324 LKKLLKRNAASRLGAGPGDAGEVQAHPFFRHINWEELLARKVEPPFKPLLQSEEDVSQFDSKFTRQTPVDSPDDSTLSESANQVFLGFTYVAPS 417          
BLAST of CX671516 vs. ExPASy Swiss-Prot
Match: KS6B1_HUMAN (Ribosomal protein S6 kinase beta-1 OS=Homo sapiens GN=RPS6KB1 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.962e-11
Identity = 36/94 (38.30%), Postives = 58/94 (61.70%), Query Frame = -2
Query:  197 LFQLLQKEASKRLGSGPGGSQEIKSHKWFKMINWKKLEARETRPSFLPEVAGKHCVANFEECWTNMPLLDSPVAS--PKFNENPFKGFTYVRPA 472
            L +LL++ A+ RLG+GPG + E+++H +F+ INW++L AR+  P F P +  +  V+ F+  +T    +DSP  S   +     F GFTYV P+
Sbjct:  324 LKKLLKRNAASRLGAGPGDAGEVQAHPFFRHINWEELLARKVEPPFKPLLQSEEDVSQFDSKFTRQTPVDSPDDSTLSESANQVFLGFTYVAPS 417          
The following BLAST results are available for this feature:
BLAST of CX671516 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
KPCB_RAT8.808e-1236.26Protein kinase C beta type OS=Rattus norvegicus GN... [more]
KPCB_RABIT8.808e-1236.26Protein kinase C beta type OS=Oryctolagus cuniculu... [more]
KPCB_HUMAN8.808e-1236.26Protein kinase C beta type OS=Homo sapiens GN=PRKC... [more]
KPCA_RABIT8.808e-1238.46Protein kinase C alpha type OS=Oryctolagus cunicul... [more]
KS6A4_MOUSE1.150e-1138.00Ribosomal protein S6 kinase alpha-4 OS=Mus musculu... [more]
KS6B1_BOVIN1.502e-1138.30Ribosomal protein S6 kinase beta-1 OS=Bos taurus G... [more]
KS6B1_RAT1.962e-1138.30Ribosomal protein S6 kinase beta-1 OS=Rattus norve... [more]
KS6B1_RABIT1.962e-1138.30Ribosomal protein S6 kinase beta-1 OS=Oryctolagus ... [more]
KS6B1_MOUSE1.962e-1138.30Ribosomal protein S6 kinase beta-1 OS=Mus musculus... [more]
KS6B1_HUMAN1.962e-1138.30Ribosomal protein S6 kinase beta-1 OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_11E09_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11E09-J17-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671516 ID=CX671516; Name=CX671516; organism=Citrus sinensis; type=EST; length=899bp
TTTTTTTTTTTTTAAATAAAGATTACATGATATTACTCTCCTTCAACAAT
CTCCATGAATAAGAACATGATTTATTCTCTCTTTCGGTCATAATTCAGCT
ACAAAGAAAACAAATATCCAAGTTTTTCAAGAACCTGCAAACGAGGGGCT
CAAAGGTCCCCTGACAATATCAAGTGTTCCTTTGAAGAAATGATGCAGCA
GGCCTCACATAAGTAAACCCCTTGAACGGATTCTCATTAAATTTTGGACT
GGCAACAGGAGAATCCAGCAATGGCATGTTAGTCCAGCACTCCTCAAAGT
TAGCAACACAATGCTTGCCAGCAACTTCAGGAAGAAAACTTGGCCTAGTT
TCCCGAGCCTCCAATTTCTTCCAATTGATCATCTTGAACCACTTGTGGGA
TTTTATCTCCTGACTGCCACCCGGTCCGCTGCCAAGGCGCTTGCTTGCTT
CTTTCTGCAGCAGCTGGAAGAGGGAGACCAAAAGAAATATTATTCTCAAT
TTCATTACTAATTTTCGTGGACAGACATGCAATGCATCATGGAACATTTT
TGCATTTTTGTCTCACCAGCCTAAAGGATGAAGATTGTAAAGCACTAAAA
TTTAAATTATTTGAGGATGGGATCAAAGACTAATACAAAAGCAAAATAGA
TAAGTGCTTAAATCGTACAACTATTGGATCCCTCAAGGACGTGCCAATTT
TTACCAACGAACTCAACAGATGGAAATTACATGTTCATCTTTTTTTCCAT
TTCTTTTCCTCACTATGACAACTAACTCAACAGATGGAAAGATCATGCTC
ATCTAGAAAGCAAAGGAACAGATATTGACAATAGTGAATTTACCCCTTTT
AAAAGTGAATGTGCTTCACTTGACAAAAACGCAGGCAACTTGATCTTAT
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