CX671516

Overview
NameCX671516
Unique NameCX671516
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length899
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX671516 vs. ExPASy Swiss-Prot
Match: KS6A4_HUMAN (Ribosomal protein S6 kinase alpha-4 OS=Homo sapiens GN=RPS6KA4 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.563e-11
Identity = 37/110 (33.64%), Postives = 62/110 (56.36%), Query Frame = -2 
Query:  146 LFQLLQKEASKRLGSGPGGSQEIKSHKWFKMINWKKLEARETRPSFLPEVAGKHCVANFEECWTNM-PLLDSPVASPKFNENPFKGFTYVRPAASFLQRNT*YCQGTFEP 472
            L +LL K+  KRLG+GP G+QE+++H +F+ ++W  L AR+    F P++  +  V NF E +T + P+   P + P  +   F+G+++V P+  F   N     G   P
Sbjct:  273 LQRLLCKDPKKRLGAGPQGAQEVRNHPFFQGLDWVALAARKIPAPFRPQIRSELDVGNFAEEFTRLEPVYSPPGSPPPGDPRIFQGYSFVAPSILFDHNNAVMTDGLEAP 382
[Close]
BLAST of CX671516 vs. ExPASy Swiss-Prot
Match: KPC1_LYTPI (Protein kinase C OS=Lytechinus pictus GN=PKC1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.563e-11
Identity = 34/87 (39.08%), Postives = 51/87 (58.62%), Query Frame = -2 
Query:  206 LQKEASKRLGSGPGGSQEIKSHKWFKMINWKKLEARETRPSFLPEVAGKHCVANFEECWTNMPLLDSPVASPKFN--ENPFKGFTYV 460
            L K   KRLGSGP G Q+I+ H++F+ I+W+KL  RE +P F+P V       NF+  +T +P   +P         ++ F+GFT+V
Sbjct:  559 LTKHPGKRLGSGPTGEQDIREHQFFRRIDWEKLANREIQPPFVPSVRNPRAAENFDPYFTKIPCALTPTDKLIIMNIQDEFQGFTFV 645
The following BLAST results are available for this feature:
BLAST of CX671516 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
KS6A4_HUMAN2.563e-1133.64Ribosomal protein S6 kinase alpha-4 OS=Homo sapien... [more]
KPC1_LYTPI2.563e-1139.08Protein kinase C OS=Lytechinus pictus GN=PKC1 PE=2... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_11E09_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-11E09-J17-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX671516 ID=CX671516; Name=CX671516; organism=Citrus sinensis; type=EST; length=899bp
TTTTTTTTTTTTTAAATAAAGATTACATGATATTACTCTCCTTCAACAAT
CTCCATGAATAAGAACATGATTTATTCTCTCTTTCGGTCATAATTCAGCT
ACAAAGAAAACAAATATCCAAGTTTTTCAAGAACCTGCAAACGAGGGGCT
CAAAGGTCCCCTGACAATATCAAGTGTTCCTTTGAAGAAATGATGCAGCA
GGCCTCACATAAGTAAACCCCTTGAACGGATTCTCATTAAATTTTGGACT
GGCAACAGGAGAATCCAGCAATGGCATGTTAGTCCAGCACTCCTCAAAGT
TAGCAACACAATGCTTGCCAGCAACTTCAGGAAGAAAACTTGGCCTAGTT
TCCCGAGCCTCCAATTTCTTCCAATTGATCATCTTGAACCACTTGTGGGA
TTTTATCTCCTGACTGCCACCCGGTCCGCTGCCAAGGCGCTTGCTTGCTT
CTTTCTGCAGCAGCTGGAAGAGGGAGACCAAAAGAAATATTATTCTCAAT
TTCATTACTAATTTTCGTGGACAGACATGCAATGCATCATGGAACATTTT
TGCATTTTTGTCTCACCAGCCTAAAGGATGAAGATTGTAAAGCACTAAAA
TTTAAATTATTTGAGGATGGGATCAAAGACTAATACAAAAGCAAAATAGA
TAAGTGCTTAAATCGTACAACTATTGGATCCCTCAAGGACGTGCCAATTT
TTACCAACGAACTCAACAGATGGAAATTACATGTTCATCTTTTTTTCCAT
TTCTTTTCCTCACTATGACAACTAACTCAACAGATGGAAAGATCATGCTC
ATCTAGAAAGCAAAGGAACAGATATTGACAATAGTGAATTTACCCCTTTT
AAAAGTGAATGTGCTTCACTTGACAAAAACGCAGGCAACTTGATCTTAT
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